Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq78534 159 5e-34
seq57685 132 6e-26
seq11270 125 9e-24
seq588 89.7 7e-13
>seq78534
Length=1057
Score = 159 bits (176), Expect = 5e-34
Identities = 531/806 (66%), Gaps = 30/806 (4%)
Strand=Plus/Minus
Query 65517 GCTTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAAC 65575
||||| ||||||||||||| | | | || || || || || || || ||||| ||
Sbjct 882 GCTTCGGGGCTATCAAATGGC-ATTCGCAAAGCCATGAATGCATCAGCCAAACCTTGTAC 824
Query 65576 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAAT 65634
||| | || || || | ||||||| | || | |||| ||||| || | ||||||
Sbjct 823 ACCCAGGCCAATGGGACGATGTCTCATGTT-GCTCTTTCGTGCTTCGGGCACAGGATAGA 765
Query 65635 AATTAATATCTATAATTTTATTGAGATTTC-TGACAATTACTTTGACCACATCCTTCAGT 65693
| || || | ||||| || || | || | || || | || |||| |||| | || |
Sbjct 764 AGTTGATGTTGATAATCTTGTTCAAGTTGCGTGTCA-TGACCTTGATGACATTATGCAAT 706
Query 65694 TTGAGAAAATC--AAATCGCT----CATCTATTACAAACATGTT--CAATGCAACAGATG 65745
||||||| | || || | | | ||||| || | || || ||||| |
Sbjct 705 CCCTGAAAATCGTAGATTCCTTCGGCCTGGTTGACAAA--TGCTGGCAGTGAGACAGACG 648
Query 65746 CCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGAT 65805
| ||||| ||||| || || |||| | | | | ||| | || || || ||||| || |
Sbjct 647 CGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGTGCAGAGGT 588
Query 65806 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 65865
| ||||||| ||||| | || | ||| || ||||| ||| || ||||| || |
Sbjct 587 TGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCTTTGT 528
Query 65866 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 65925
| || ||||||||| | ||||| ||| |||||| || || || || | ||| | | ||
Sbjct 527 ACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCACA-GTTTC 469
Query 65926 -GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGT 65981
||||||| ||| | | | | |||| || ||| || ||| || ||||
Sbjct 468 TGAGCCTTAATTGTC---TGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGAACAAGGCC 412
Query 65982 TCGAACTCGTCTCCCCAAACATTGTC---CAATCCAGGACATTCATCCGGACACATCAAC 66038
||||| ||||| || | || ||| ||| ||||||||||||| ||||||||||
Sbjct 411 TCGAATTCGTCGCCGTAG-CA--GTCAGACAAACCAGGACATTCATTGGGACACATCAGT 355
Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098
| ||| ||| | | | | ||||| ||||| || || ||||||||||| |||||
Sbjct 354 GTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAGAGCGTAG 295
Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158
|| | |||||||| ||| ||| || || || |||||| | | | ||| || |
Sbjct 294 AAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAGCCACTCG 235
Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218
| | |||| ||||| || || | ||| ||||| | | || || | ||||| ||
Sbjct 234 AATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTTGTTGCCG 175
Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278
|| ||||| | ||| | ||| ||||| | | | |||| || ||| || | | ||| ||
Sbjct 174 CCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAGACCGTTC 115
Query 66279 GATGTACCATTGGTCCCGGAGATATA 66304
|| || || || || || | ||| ||
Sbjct 114 GAAGTGCCGTTTGTACCCGCGATGTA 89
>seq57685
Length=1792
Score = 132 bits (146), Expect = 6e-26
Identities = 381/579 (66%), Gaps = 8/579 (1%)
Strand=Plus/Plus
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071
||||| || || | ||| ||||||| || ||| ||||| | | || || || |||||
Sbjct 1216 CCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCATTCTGCTCGACACGCTTCATG 1275
Query 66072 AAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCC 66130
|| ||||| |||||||| || || ||| || | || | | | ||||| || ||
Sbjct 1276 AAAAGATCGGGAATCCAGAGTGC-ATAGAAGAGGTCACGAGCACGGACCTCCTCCTTGCC 1334
Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190
||||| |||||| ||||| || | | |||| ||||| || || | ||| ||
Sbjct 1335 GTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTACAT 1394
Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250
||| | | || || || ||||| || || || || | || | ||| || || || |
Sbjct 1395 GGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACATAACGAGCAGTATTGTTGAA 1454
Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310
|| | | |||||| | | |||||||||||| |||||||| ||| || || ||
Sbjct 1455 GACACGAAGCATTGGTACCAGACCATTGGATGTGCCATTGGTGCCGCCAATGTACGAACC 1514
Query 66311 ACTTGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368
| | ||||| || || ||| | || || || || || | || ||||| | |
Sbjct 1515 AGTCGCACGGATGCGGTGAACGTTG--AACCCGATGCCGCCAGCATTCTTCGAGATCATT 1572
Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428
||||| || | ||||| ||||| ||||| || || || ||| | | || | ||
Sbjct 1573 GCGCAGGTCTTGAGTGTATCGTAGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGG 1632
Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488
|| ||| | || || | ||| || ||| | || | || || |||||||||
Sbjct 1633 AAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGCACTGAAGAGTGTCGGCGAAGCGTGC 1692
Query 66489 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547
|| || | || | || | |||| ||||| ||||| || || | || ||||||
Sbjct 1693 GTGAAGTACTTGTTTGACATGTAG-TTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCC 1751
Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 66586
|||||| || || ||||||||||| | ||| ||||||||
Sbjct 1752 ATGAATGCCAACGGCGACACGCATGATCATCTGCTGAGG 1790
>seq11270
Length=18388
Score = 125 bits (138), Expect = 9e-24
Identities = 240/351 (68%), Gaps = 2/351 (1%)
Strand=Plus/Plus
Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217
|| |||||||||||||| || || ||||||| || || |||||||| || || |
Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547
Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276
|||||||||| || |||||||| ||||||||||| | |||| | | | || || |||||
Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606
Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336
||| ||||| || || || || || || ||||| | | | | | | | ||
Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGCGAACGATTCTCCGCCGTCGAT 5666
Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396
|||| | ||||| ||||||||||| || ||||| | ||||| || || | ||
Sbjct 5667 CCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAA 5726
Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456
|| ||| || || || || | ||| || || | ||| ||||| ||||||||
Sbjct 5727 CAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTC 5786
Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507
|| || || || || || || || || || || |||||| | ||||||
Sbjct 5787 AGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTC 5837
>seq588
Length=109198
Score = 89.7 bits (98), Expect = 7e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275
|| || ||||| | |||| || || | ||| | || | | |||||||| ||| |||
Sbjct 13262 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 13203
Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335
|| ||||| ||||| || || ||||| || || | ||||||||||| || |||
Sbjct 13202 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGAG 13143
Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395
| ||| ||||| || || ||| || | || || |||||| || ||||| |||
Sbjct 13142 ACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATATG 13083
Query 66396 CCCTCTATACTATCATCCATCATG 66419
|| || ||||||||||| |||||
Sbjct 13082 CCTTCAATACTATCATCTTTCATG 13059
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515
|| || ||||| || | || |||||||| || || ||||| | ||| | | || |
Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881
Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574
|| || | ||| |||| || ||||| | ||| |||||||| || | || | ||||||
Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822
Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634
|||||||||||| ||||| || | ||| | | ||||| | ||| || | || |
Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762
Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682
||||| |||||||| || | || |||||||| || || || ||
Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657073741922760
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