Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq78534 159 5e-34 seq57685 132 6e-26 seq11270 125 9e-24 seq588 89.7 7e-13 >seq78534 Length=1057 Score = 159 bits (176), Expect = 5e-34 Identities = 531/806 (66%), Gaps = 30/806 (4%) Strand=Plus/Minus Query 65517 GCTTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAAC 65575 ||||| ||||||||||||| | | | || || || || || || || ||||| || Sbjct 882 GCTTCGGGGCTATCAAATGGC-ATTCGCAAAGCCATGAATGCATCAGCCAAACCTTGTAC 824 Query 65576 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAAT 65634 ||| | || || || | ||||||| | || | |||| ||||| || | |||||| Sbjct 823 ACCCAGGCCAATGGGACGATGTCTCATGTT-GCTCTTTCGTGCTTCGGGCACAGGATAGA 765 Query 65635 AATTAATATCTATAATTTTATTGAGATTTC-TGACAATTACTTTGACCACATCCTTCAGT 65693 | || || | ||||| || || | || | || || | || |||| |||| | || | Sbjct 764 AGTTGATGTTGATAATCTTGTTCAAGTTGCGTGTCA-TGACCTTGATGACATTATGCAAT 706 Query 65694 TTGAGAAAATC--AAATCGCT----CATCTATTACAAACATGTT--CAATGCAACAGATG 65745 ||||||| | || || | | | ||||| || | || || ||||| | Sbjct 705 CCCTGAAAATCGTAGATTCCTTCGGCCTGGTTGACAAA--TGCTGGCAGTGAGACAGACG 648 Query 65746 CCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGAT 65805 | ||||| ||||| || || |||| | | | | ||| | || || || ||||| || | Sbjct 647 CGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGTGCAGAGGT 588 Query 65806 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 65865 | ||||||| ||||| | || | ||| || ||||| ||| || ||||| || | Sbjct 587 TGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCTTTGT 528 Query 65866 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 65925 | || ||||||||| | ||||| ||| |||||| || || || || | ||| | | || Sbjct 527 ACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCACA-GTTTC 469 Query 65926 -GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGT 65981 ||||||| ||| | | | | |||| || ||| || ||| || |||| Sbjct 468 TGAGCCTTAATTGTC---TGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGAACAAGGCC 412 Query 65982 TCGAACTCGTCTCCCCAAACATTGTC---CAATCCAGGACATTCATCCGGACACATCAAC 66038 ||||| ||||| || | || ||| ||| ||||||||||||| |||||||||| Sbjct 411 TCGAATTCGTCGCCGTAG-CA--GTCAGACAAACCAGGACATTCATTGGGACACATCAGT 355 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 | ||| ||| | | | | ||||| ||||| || || ||||||||||| ||||| Sbjct 354 GTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAGAGCGTAG 295 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 || | |||||||| ||| ||| || || || |||||| | | | ||| || | Sbjct 294 AAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAGCCACTCG 235 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | | |||| ||||| || || | ||| ||||| | | || || | ||||| || Sbjct 234 AATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTTGTTGCCG 175 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 || ||||| | ||| | ||| ||||| | | | |||| || ||| || | | ||| || Sbjct 174 CCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAGACCGTTC 115 Query 66279 GATGTACCATTGGTCCCGGAGATATA 66304 || || || || || || | ||| || Sbjct 114 GAAGTGCCGTTTGTACCCGCGATGTA 89 >seq57685 Length=1792 Score = 132 bits (146), Expect = 6e-26 Identities = 381/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Plus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | ||| ||||||| || ||| ||||| | | || || || ||||| Sbjct 1216 CCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCATTCTGCTCGACACGCTTCATG 1275 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCC 66130 || ||||| |||||||| || || ||| || | || | | | ||||| || || Sbjct 1276 AAAAGATCGGGAATCCAGAGTGC-ATAGAAGAGGTCACGAGCACGGACCTCCTCCTTGCC 1334 Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190 ||||| |||||| ||||| || | | |||| ||||| || || | ||| || Sbjct 1335 GTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTACAT 1394 Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250 ||| | | || || || ||||| || || || || | || | ||| || || || | Sbjct 1395 GGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACATAACGAGCAGTATTGTTGAA 1454 Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310 || | | |||||| | | |||||||||||| |||||||| ||| || || || Sbjct 1455 GACACGAAGCATTGGTACCAGACCATTGGATGTGCCATTGGTGCCGCCAATGTACGAACC 1514 Query 66311 ACTTGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 | | ||||| || || ||| | || || || || || | || ||||| | | Sbjct 1515 AGTCGCACGGATGCGGTGAACGTTG--AACCCGATGCCGCCAGCATTCTTCGAGATCATT 1572 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 ||||| || | ||||| ||||| ||||| || || || ||| | | || | || Sbjct 1573 GCGCAGGTCTTGAGTGTATCGTAGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGG 1632 Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488 || ||| | || || | ||| || ||| | || | || || ||||||||| Sbjct 1633 AAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGCACTGAAGAGTGTCGGCGAAGCGTGC 1692 Query 66489 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547 || || | || | || | |||| ||||| ||||| || || | || |||||| Sbjct 1693 GTGAAGTACTTGTTTGACATGTAG-TTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCC 1751 Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 66586 |||||| || || ||||||||||| | ||| |||||||| Sbjct 1752 ATGAATGCCAACGGCGACACGCATGATCATCTGCTGAGG 1790 >seq11270 Length=18388 Score = 125 bits (138), Expect = 9e-24 Identities = 240/351 (68%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||| || || ||||||| || || |||||||| || || | Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 |||||||||| || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 ||| ||||| || || || || || || ||||| | | | | | | | || Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGCGAACGATTCTCCGCCGTCGAT 5666 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 |||| | ||||| ||||||||||| || ||||| | ||||| || || | || Sbjct 5667 CCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAA 5726 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 || ||| || || || || | ||| || || | ||| ||||| |||||||| Sbjct 5727 CAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTC 5786 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 || || || || || || || || || || || |||||| | |||||| Sbjct 5787 AGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTC 5837 >seq588 Length=109198 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || || ||||| | |||| || || | ||| | || | | |||||||| ||| ||| Sbjct 13262 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 13203 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || ||||| || || | ||||||||||| || ||| Sbjct 13202 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGAG 13143 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || ||| || | || || |||||| || ||||| ||| Sbjct 13142 ACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATATG 13083 Query 66396 CCCTCTATACTATCATCCATCATG 66419 || || ||||||||||| ||||| Sbjct 13082 CCTTCAATACTATCATCTTTCATG 13059 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | || |||||||| || || ||||| | ||| | | || | Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | ||| |||| || ||||| | ||| |||||||| || | || | |||||| Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| ||||| || | ||| | | ||||| | ||| || | || | Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||| |||||||| || | || |||||||| || || || || Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657073741922760