Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13269 104 2e-17 seq8957 100 3e-16 seq10846 98.7 1e-15 seq104979 96.9 3e-15 seq1750 95.1 1e-14 seq99200 93.3 4e-14 seq58530 93.3 4e-14 seq12926 87.8 2e-12 seq7211 86.0 6e-12 seq23250 84.2 2e-11 seq11477 82.4 8e-11 >seq13269 Length=14915 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || |||| ||||||||||| || |||||||| || || || || || || Sbjct 14103 AACCAAATGAAGAGTAGACTCTTTCTGGATGTTATAGTCAGCCAAAGTCCTGCCATCCTC 14044 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| ||||| | ||||| | || || || || || || |||||||| || | Sbjct 14043 GAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATC-CT 13985 Query 139675 GATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||||| ||| | | || | ||| || | | ||| ||||||| ||| | |||| Sbjct 13984 GAATTTTTGCCTTAACATTGTCAATTGTATCAGAGCTCTCGACCTCAAGGGTGATGGTCT 13925 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || ||||| || |||||||| Sbjct 13924 TGCCAGTAAGGGTCTTTACAAAGATTTGCAT 13894 >seq8957 Length=24100 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| ||| | ||||| || |||||||| ||||| || || ||| Sbjct 15734 GCCTCCGCGGAGTCGCAGAACGAGGTGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGC 15793 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||| | || || || || |||||| || ||||||||||| || Sbjct 15794 GAGAGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGATCGGGCGG 15853 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||||| | |||||| Sbjct 15854 GATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCAC 15913 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||||| ||||| ||||| || ||||| Sbjct 15914 CTCCAACGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCAT 15961 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | ||||| || ||||| ||||||||||||||||| Sbjct 15048 TGGCCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCA 15107 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || ||| || || | || || ||||| |||| || | |||||||| ||| Sbjct 15108 GCGAGAGTCCTCCCATCCTCCAATTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGA 15167 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || || || ||| | || | || | | || | || |||| | ||| Sbjct 15168 GGAATTCCCTCCTTATC-TTGAATCTTCGCCTTCACATTATCGATCGTATCGGAGCTCTC 15226 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| | || | |||||| || |||| || || |||||||| |||||| || Sbjct 15227 CACCTCCAGAGTAATCGTCTTCCCCGTCAGAGTCTTCACGAATATCTGCATACCT 15281 >seq10846 Length=19378 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| ||||| |||||||| ||| || |||| |||||| Sbjct 11978 ACCAAGTGAAGTGTGGACTCCTTTTGGATGTTATAGTCGGCCAAAGTGCGACCATCTTCG 12037 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || || ||||||||| |||||| | |||||| || || || || || || ||||| | Sbjct 12038 AGTTGCTTACCAGCAAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGG 12097 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | || | ||||| | | || ||||| | ||| | |||||| Sbjct 12098 ATCTTAGCTTTGACATTATCAATAGTGTCTGAGCTTTCGACCTCGAGGGTGATGGTCTTG 12157 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| || || || || || ||||| Sbjct 12158 CCGGTCAGAGTCTTAACAAAGATCTGCAT 12186 >seq104979 Length=655 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || ||||| | |||||||| || || ||||| |||||| | Sbjct 93 CCGCCGCGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGAC 152 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || ||||||||||| || || |||||||||||||||| || || || Sbjct 153 AAAGTGCGTCCA-TCCTCGAGCTGTTTGCCGGCGAAGATCAGACGTTGCTGGTCTGGTGG 211 Query 139657 TATGCCTTCTTTGTC 139671 || ||||| ||||| Sbjct 212 AATCCCTTCCTTGTC 226 >seq1750 Length=74028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || |||| ||||||||||| || |||||||| || || || || || || Sbjct 62447 AACCAAATGAAGAGTAGACTCTTTCTGGATGTTATAGTCAGCCAAAGTCCTGCCCTCCTC 62388 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||||| |||||| | ||||| | || || || || || || ||||| || || | Sbjct 62387 CAGCTGTTTTCCAGCAAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCCTTATC-CT 62329 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||||| ||| | | || | |||||| | | ||| ||||| | || | |||| Sbjct 62328 GAATTTTTGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTAATAGTCT 62269 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || ||||| || |||||||| Sbjct 62268 TGCCAGTAAGGGTCTTTACAAAGATTTGCAT 62238 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| ||||||||||| ||||| || |||| ||||| ||||| || |||||| | Sbjct 62657 CTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAA 62598 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||| || | |||||||| || || || || || ||||| ||| | |||| |||| | Sbjct 62597 GATGAGCCTCTGCTGATCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTTGCTTTAACAT 62539 Query 139693 TTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 | || || |||| | ||||||||||| ||| | ||||| || |||| || || | Sbjct 62538 TATCAATGGTGTCAGAACTCTCCACCTCAAGGGTGATGGTCTTTCCTGTCAGAGTCTTAA 62479 Query 139752 CGAATATTTGCAT 139764 | || || ||||| Sbjct 62478 CAAAAATCTGCAT 62466 >seq99200 Length=725 Score = 93.3 bits (102), Expect = 4e-14 Identities = 274/415 (66%), Gaps = 13/415 (3%) Strand=Plus/Minus Query 52537 GCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATC--- 52593 ||| | |||| | |||| || | ||||| |||| ||| ||||| |||| ||||||| Sbjct 449 GCTATCGACACTATTCCATGCATCCGCAAGAAGGCTGAGTGGGCGTTGAGATGGATCTCT 390 Query 52594 GAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTG 52653 || || || |||| | ||| ||| |||||||||| || || || || || || | Sbjct 389 GATAAGGA--AAGC-AGTTTCGCCCAACGTCTGGTGGCATTCGCCGCCGTTGAGGGCATC 333 Query 52654 tttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGC 52713 || || || || ||| || | || || | |||| | || | ||||| || Sbjct 332 TTCTTCTCCGGGTCTTTCGCCTCCATTTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGT 273 Query 52714 CTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGT 52773 || || || ||||||| |||| || || || ||||| |||||||||||||| || || Sbjct 272 CTGACATTCTCCAACGAGCTGATCTCTCGTGATGAAGGTATGCACACAGATTTCGCCTGC 213 Query 52774 TTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTT 52832 || || | | | || || | | || | | || |||| | | || | Sbjct 212 CTGCTACTGTCACACATGCACTTCCGCCCAAGCGCC----GATGTTATTCAAAAGATTAT 157 Query 52833 TAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTT 52892 ||||| || | ||| || ||||||| || ||||||||| |||| | || | Sbjct 156 CCTCGAGGCTGTTGCCATCGAGCAAGAGTTCTTGACGGACGCTCTACCATGCGCTCTGCT 97 Query 52893 GGGCATGAAC-GCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACT 52946 ||||||||| || ||| | ||| | ||||||||||| ||||| |||||||| Sbjct 96 TGGCATGAACAGCAACC-TCATGAAGCAATACATCGAGTTCGTTGCTGACAGACT 43 >seq58530 Length=1747 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | ||||| || ||||| ||||||||||||||||| Sbjct 318 TGGCCACCGCGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCA 259 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || ||| || || | || || |||||| ||||||| | |||||||| ||| Sbjct 258 GCGAGAGTCCTCCCATCCTCCAATTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCCGGA 199 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || || || ||| | || | || | | || | || || | ||| Sbjct 198 GGGATTCCCTCCTTATC-TTGAATCTTCGCCTTCACATTGTCGATCGTATCAGAACTCTC 140 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| | || | |||||| || |||| || || |||||||| |||||| || Sbjct 139 CACCTCCAGAGTAATCGTCTTCCCAGTCAGAGTCTTCACGAATATCTGCATACCT 85 >seq12926 Length=15191 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | ||||| || ||||| || |||||||||||||| Sbjct 66 TGGCCACCGCGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTATAATCA 125 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || ||| || || | || || |||||| ||||||| | |||||||| ||| Sbjct 126 GCGAGAGTCCTCCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGA 185 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || || || ||| | || | || | | || | || || | ||| Sbjct 186 GGGATTCCCTCCTTATC-TTGAATCTTCGCCTTCACATTATCGATCGTATCAGAACTCTC 244 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| | || | |||||| || |||| || || |||||||| |||||| || Sbjct 245 CACCTCCAGAGTAATCGTCTTCCCAGTCAGAGTCTTCACGAATATCTGCATACCT 299 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || || || | || || || || ||||||||||||||| | |||| ||| Sbjct 311 CAACACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCGAGGGTGCGACCGTC 370 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || | |||||||| || |||| || | ||||| || || || |||||||| ||||| Sbjct 371 CTCCAATTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTC 430 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | || | ||||||| | ||||||||| | ||| | || Sbjct 431 CTGGATCTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGT 490 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| | ||||| ||||| || ||||| Sbjct 491 TTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 523 >seq7211 Length=36427 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/235 (69%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | ||||| || ||||| ||||||||||||||||| Sbjct 7981 TGGCCACCGCGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATC- 7923 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || ||||| || | || || |||||| ||||||| | |||| ||| || Sbjct 7922 -------AGCGAGAGTCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTAATCCGGT 7870 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || | || || ||| | || | || | | || | || |||| | ||| Sbjct 7869 GGAATTCCCTACTTATC-ATGAATCTTGGCCTTCACATTATCGATCGTATCGGAGCTCTC 7811 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| | || | |||||| || |||| || || |||||||| |||||| || Sbjct 7810 CACCTCCAGAGTAATCGTCTTCCCCGTCAGAGTCTTCACGAATATCTGCATACCT 7756 >seq23250 Length=6169 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| | || | ||| | ||| | ||||| || ||||| ||||||||||||||||| Sbjct 6106 TGGCCACTGCGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATC- 6048 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || ||||| || | || || |||||| ||||||| | ||||| ||| || Sbjct 6047 -------AGCGAGAGTCCTCCAATTGCTTCCCAGCAAAGATCAGCCTTTGCTAATCCGGT 5995 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || | || || ||| | || | || | | || | || |||| | ||| Sbjct 5994 GGAATTCCCTACTTATC-ATGAATCTTGGCCTTCACATTATCGATCGTATCGGAGCTCTC 5936 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || | |||||| || |||| || || |||||||| ||||| Sbjct 5935 CACCTCCAGAGTAATCGTCTTCCCCGTCAGAGTCTTCACGAATATCTGCAT 5885 >seq11477 Length=17588 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || || || | || || || || ||||||||||||||| | |||| ||| Sbjct 301 CAACACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCGAGGGTGCGACCGTC 360 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || | |||||| || || |||| || | ||||| || || || |||||||| ||||| Sbjct 361 CTCTAACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTC 420 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | || | ||||||| | ||||||||| | ||| | || Sbjct 421 CTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGT 480 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| | ||||| ||||| || ||||| Sbjct 481 TTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495235641328800