Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq78534 181 2e-40 seq57685 159 5e-34 seq11270 125 1e-23 seq588 93.3 6e-14 >seq78534 Length=1057 Score = 181 bits (200), Expect = 2e-40 Identities = 386/571 (68%), Gaps = 8/571 (1%) Strand=Plus/Minus Query 79617 GACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGT 79676 |||||| || ||||| ||||| || || |||| | | | | ||| | || ||||| || Sbjct 655 GACAGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGT 596 Query 79677 GCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 79736 ||||||||| |||| || ||||| | || | ||| || ||||| ||| || || Sbjct 595 GCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGC 536 Query 79737 ATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 ||| || || || ||||| ||| | ||||| ||| |||||| || || || || | ||| Sbjct 535 ATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCA 476 Query 79797 GACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TCGTATTGTGTAT 79852 | | || ||||||| ||| | || | | |||| || ||| || |||| || Sbjct 475 CA-GTTTCTGAGCCTTAATTGT---CTGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGA 420 Query 79853 ATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACA 79912 | || ||||| ||||| || | || || ||||||||||| | ||||||| Sbjct 419 ACAAGGCCTCGAATTCGTCGCCGTAGCAGTCAGACAAACCAGGACATTCATTGGGACACA 360 Query 79913 TCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972 ||| | ||| ||| ||| | | |||||| ||||| || || ||||||||||| |||| Sbjct 359 TCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAGAG 300 Query 79973 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 80032 | || |||||||||| ||| || || || || |||||| | | | ||| Sbjct 299 CGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAGCC 240 Query 80033 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGT 80092 || | | | ||||| ||||| || || | ||| ||||| | | || |||| |||| Sbjct 239 ACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTTGT 180 Query 80093 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 80152 | || || ||||| | ||| | ||| ||||| | | | |||| || ||| || | | || Sbjct 179 TGCCGCCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAGAC 120 Query 80153 CATTGGATGTACCATTGGTCCCGGAGATATA 80183 | || || || || || || || | ||| || Sbjct 119 CGTTCGAAGTGCCGTTTGTACCCGCGATGTA 89 >seq57685 Length=1792 Score = 159 bits (176), Expect = 5e-34 Identities = 405/609 (67%), Gaps = 8/609 (1%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 |||||||| || || | || || | | ||||| || |||| || ||||||| || | Sbjct 1186 TCGAACTCATCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAGCGTC 1245 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979 || ||||||| | || || || ||||| || ||||| |||||||| || || ||| || Sbjct 1246 CAATCTCCATTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGC-ATAGAA 1304 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 || || | | | |||||| || || ||||| |||||| ||||| || | Sbjct 1305 GAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGCGAA 1364 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 | ||||| ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 1365 GACATCAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGGGACGCTTGTTGCCACC 1424 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 || || | || | ||| || || || | || | | |||||| | | ||||||||| Sbjct 1425 TTGGTCGACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGGA 1484 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGA 80217 ||| |||||||| ||| || || ||| | ||||| || || ||| | Sbjct 1485 TGTGCCATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGAACGTTG--AAC 1542 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || || || || | || ||||| | |||||| || | ||||| ||||| ||| Sbjct 1543 CCGATGCCGCCAGCATTCTTCGAGATCATTGCGCAGGTCTTGAGTGTATCGTAGATACCC 1602 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || ||||| || || | | || | || || ||| | || || | ||| Sbjct 1603 TCGATGCTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGTTGGGAGTA 1662 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTA 80396 || ||| | || | || || ||||||||||| || | || | |||| |||| ||||| Sbjct 1663 CCAGCACTGAAGAGTGTCGGCGAAGCGTGCGTGAAGTACTTGTTTGACATGTAG-TTGTA 1721 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 ||||| || || | || |||||| |||||| || || ||||||||||| | ||| Sbjct 1722 GGTCTCGATGGCAGCCTCGATATCCTCGCCATGAATGCCAACGGCGACACGCATGATCAT 1781 Query 80457 GTGCTGAGG 80465 |||||||| Sbjct 1782 CTGCTGAGG 1790 >seq11270 Length=18388 Score = 125 bits (138), Expect = 1e-23 Identities = 375/576 (65%), Gaps = 2/576 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||||||||| || || ||||||| || | |||||||| || || | Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||||| || |||||||| ||||||||||| | |||| || || || ||||| Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 || ||||| || ||| || || | || ||||| | | | | | | | || Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGCGAACGATTCTCCGCCGTCGAT 5666 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 |||| | ||||| ||||||||||| || ||||| | || || || || | || Sbjct 5667 CCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAA 5726 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 || ||| || || || || | ||| || |||| ||| ||||| |||||||| Sbjct 5727 CAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTC 5786 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || || || || || || || ||||| || || |||||| | |||||| | || || Sbjct 5787 AGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACTTG 5846 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 || || | || | | | || | ||| || || || ||||| ||| || || Sbjct 5847 GACCTCCTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAA 5906 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 || || | || || | | || || | ||| | ||||| || | ||| | | Sbjct 5907 GAAGGCGAGCACGTGAGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAGTGACG 5966 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 | || || | ||| || || || | ||||| || || ||||| ||||| || || Sbjct 5967 TAAGTCGCCGGAGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTA 6026 Query 50499 CATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||| | |||||| || | || || || ||||| || Sbjct 6027 CATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 6062 >seq588 Length=109198 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | || |||||||| || || ||||| | ||||| | || | Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | ||| |||| || ||||| | ||| |||||||| || | || | |||||| Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| ||||| || | ||| | | ||||| | |||||| | || | Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| |||||||| || | || |||||||| || || || || Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 |||||||| || || || || ||| || || | ||| |||||| ||| | || || Sbjct 13712 TCTCTTTCATACTGGGTGTACAATTTCTCAAATTTGTCACCCCAACAATCTGCCAAACCT 13653 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAA 79951 ||| | || | ||| || | ||| ||||| ||||||| | |||| |||| || ||| | Sbjct 13652 GGAGACTCATTAGGGCAAAACAATGACCATTCTCCAT--TGCTTTGAACTCTTTCCATGA 13595 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 |||||||||||| ||||||||| ||| ||||| | | | || |||||| Sbjct 13594 AGAGATCAGGAACCCAAAGAGCATAAAACAGATCACGTGCACGATTCTCCTC 13543 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | |||| || || | ||| | || | | |||||||| ||| ||| Sbjct 13262 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 13203 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||| ||||| || || ||||| || || | ||||||||||| || ||| Sbjct 13202 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGAG 13143 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || ||| || | || || |||||| || ||||| ||| Sbjct 13142 ACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATATG 13083 Query 80275 CCCTCTATGCTATCATCAATCATG 80298 || || || |||||||| ||||| Sbjct 13082 CCTTCAATACTATCATCTTTCATG 13059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717069389865960