Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq99200 125 7e-24 seq9621 95.1 1e-14 >seq99200 Length=725 Score = 125 bits (138), Expect = 7e-24 Identities = 322/482 (67%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 || || ||||| || ||||| | || ||||| | |||| || || | ||| || || Sbjct 250 ATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATG 309 Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027 | || || |||||||| ||||| || |||||||| || || || || | | |||| Sbjct 310 GAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGG 369 Query 14028 CC-AAACGATGCTTTTTTGTTC-GATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14085 | |||| |||||| | || || |||||| | ||||| |||| || || | Sbjct 370 GCGAAAC--TGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGGA 427 Query 14086 TAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCT-CTTTAGTACTTGAAATG 14144 | | || || || ||||||| || | || | |||| |||| | ||| | Sbjct 428 TGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAA 487 Query 14145 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAA 14204 |||||||||| || ||||| |||||||| ||||| || || ||||| ||||| ||| Sbjct 488 -ATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAA 546 Query 14205 CCATAAAAGCATCTAGCTTCCGACCATTGTACTT---CCGAGTAAAATCTTTCGGCCAAA 14261 ||||||||||||| ||| || | ||| || | ||||| ||||| ||| | | Sbjct 547 CCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAG---AATCTCTCGACAAGG 603 Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321 || || || || ||||| ||| || || || || || | | || | ||||||||| Sbjct 604 TTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGAGATAAAGTAT 663 Query 14322 TGCTCTTCATTGTTGAGTTTTTT---CCAATCGGATAAATCCTTAGAAAGATCTACTTCA 14378 ||| || | |||||| || || ||| ||| | ||| || || ||||| || || Sbjct 664 CTCTCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTTTTGAGAGATCCACCTCT 723 Query 14379 TC 14380 || Sbjct 724 TC 725 >seq9621 Length=23181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| |||||||| ||||||||||||||| |||||| || ||||| ||||| || Sbjct 8835 CAAGCAAAGTCACAATGGAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAATGTCAAG 8894 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATAT 13966 |||||||||| ||| | ||||| | ||| ||||| Sbjct 8895 CCTGGCATCATTCCCCTCTTTTTAAGCCAGAATAT 8929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478926920202600