Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq99200 134 1e-26
seq9621 95.1 1e-14
>seq99200
Length=725
Score = 134 bits (148), Expect = 1e-26
Identities = 324/482 (67%), Gaps = 15/482 (3%)
Strand=Plus/Plus
Query 13696 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13755
|| || ||||| || ||||| | || ||||| | |||| || || | ||| || ||
Sbjct 250 ATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATG 309
Query 13756 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCT 13815
| ||||| || ||||| ||||| || |||||||| || || || || | || ||||
Sbjct 310 GAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGG 369
Query 13816 CC-AAACGATGCTTTT-TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873
| |||| |||||| || | || |||||| | ||||| |||| || || |
Sbjct 370 GCGAAAC--TGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGGA 427
Query 13874 TAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCT-CTTTAGTACTTGAAATG 13932
| | || || ||||| |||| ||| | | | |||| |||| | ||| |
Sbjct 428 TGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAA 487
Query 13933 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAA 13992
|||||||||| || ||||| |||||||| ||||| || || || || ||||| |||
Sbjct 488 -ATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAA 546
Query 13993 CCATAAAAACATCTAGCTTCTGACCATTGTACCT---CCGAGTAAAATCTTTCTGCCAAG 14049
|||||||| |||| ||| |||| ||| |||| ||||| ||||| || | | |
Sbjct 547 CCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAG---AATCTCTCGACAAGG 603
Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109
|| || || |||||||| ||| || || || || || | | || | |||||||||
Sbjct 604 TTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGAGATAAAGTAT 663
Query 14110 TGCTCTTCATTGTTGAGTTTTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCA 14166
||| || | |||||| || || ||| ||| | ||| || || ||||| || ||
Sbjct 664 CTCTCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTTTTGAGAGATCCACCTCT 723
Query 14167 TC 14168
||
Sbjct 724 TC 725
>seq9621
Length=23181
Score = 95.1 bits (104), Expect = 1e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719
|| ||||| |||||||| ||||||||||||||| |||||| || ||||| ||||| ||
Sbjct 8835 CAAGCAAAGTCACAATGGAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAATGTCAAG 8894
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754
|||||||||| ||| | ||||| | ||| |||||
Sbjct 8895 CCTGGCATCATTCCCCTCTTTTTAAGCCAGAATAT 8929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477789622509960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |