Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq99200 134 1e-26 seq9621 95.1 1e-14 >seq99200 Length=725 Score = 134 bits (148), Expect = 1e-26 Identities = 324/482 (67%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 13696 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13755 || || ||||| || ||||| | || ||||| | |||| || || | ||| || || Sbjct 250 ATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATG 309 Query 13756 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCT 13815 | ||||| || ||||| ||||| || |||||||| || || || || | || |||| Sbjct 310 GAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGG 369 Query 13816 CC-AAACGATGCTTTT-TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873 | |||| |||||| || | || |||||| | ||||| |||| || || | Sbjct 370 GCGAAAC--TGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGGA 427 Query 13874 TAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCT-CTTTAGTACTTGAAATG 13932 | | || || ||||| |||| ||| | | | |||| |||| | ||| | Sbjct 428 TGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAA 487 Query 13933 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAA 13992 |||||||||| || ||||| |||||||| ||||| || || || || ||||| ||| Sbjct 488 -ATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAA 546 Query 13993 CCATAAAAACATCTAGCTTCTGACCATTGTACCT---CCGAGTAAAATCTTTCTGCCAAG 14049 |||||||| |||| ||| |||| ||| |||| ||||| ||||| || | | | Sbjct 547 CCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAG---AATCTCTCGACAAGG 603 Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 || || || |||||||| ||| || || || || || | | || | ||||||||| Sbjct 604 TTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGAGATAAAGTAT 663 Query 14110 TGCTCTTCATTGTTGAGTTTTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCA 14166 ||| || | |||||| || || ||| ||| | ||| || || ||||| || || Sbjct 664 CTCTCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTTTTGAGAGATCCACCTCT 723 Query 14167 TC 14168 || Sbjct 724 TC 725 >seq9621 Length=23181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| |||||||| ||||||||||||||| |||||| || ||||| ||||| || Sbjct 8835 CAAGCAAAGTCACAATGGAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAATGTCAAG 8894 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 |||||||||| ||| | ||||| | ||| ||||| Sbjct 8895 CCTGGCATCATTCCCCTCTTTTTAAGCCAGAATAT 8929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477789622509960