Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq8957 111 1e-19 seq12926 104 2e-17 seq93805 102 6e-17 seq7211 96.9 3e-15 seq11477 95.1 9e-15 seq10846 95.1 9e-15 seq3441 93.3 3e-14 seq23250 91.5 1e-13 seq16751 84.2 2e-11 >seq8957 Length=24100 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || |||| | || | || | |||| ||| || || | |||||| |||| Sbjct 15734 GCCTCCGCGGAGTCGCAGAACGAGGTGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGC 15793 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| |||| |||||||| || ||||| || ||||||||||| ||||||| ||| Sbjct 15794 GAGAGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGATCGGGCGG 15853 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | || || || | | |||||| ||| ||| | Sbjct 15854 GATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCG-GAGCTCTCCA 15912 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 | || | ||| || || || ||||| ||||||||||| || || ||||| || || Sbjct 15913 CCTCCAACGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCATCTTTTT 15967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || | ||| | ||||| ||| ||| || || | ||||||||||| Sbjct 15507 CCTCCACGGAGCCTGAGCACGAGATGGAGAGTTGACTCTTTCTGGATATTGTAATCGGCG 15566 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||||||| |||||||| || || | || ||| || || | ||| Sbjct 15567 AGGGTACGGCCTTCCTCCAATTGCTTGCCGGCGAAGATGAGTCTCTGCTGGTCCGGCGGA 15626 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | || || | | | |||||| ||| ||| || Sbjct 15627 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCG-GAGCTCTCCAC 15685 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || ||||| || || || ||||| Sbjct 15686 CTCCAAGGTGATCGTCTTACCGGTCAGGGTTTTGACGAAGATCTGCAT 15733 >seq12926 Length=15191 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || ||||||||||| | ||| ||||| || | || ||||||| Sbjct 297 CCTCCACGGAGCCTCAACACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCG 356 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| ||||||||||| ||||| || || | | ||| || || | || Sbjct 357 AGGGTGCGACCGTCCTCCAATTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 416 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | ||||| || | | |||||| ||| ||| || Sbjct 417 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCG-GAGCTCTCCAC 475 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || |||||||||||||| |||||||| || || ||||| || Sbjct 476 CTCCAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 526 >seq93805 Length=797 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||||| ||||| ||||||||||| | ||| |||||| || | ||||| |||| Sbjct 589 CGCCACCACGGAGTCTCAACACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 530 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 ||| || || | || |||||||| |||||||| || ||||||||||| || |||| | Sbjct 529 ACAGAGTTCGGCCATCCTCCAATTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTG 470 Query 43001 GCACACCTTCTTTTTC 43016 | | ||||| || || Sbjct 469 GGATTCCTTCCTTGTC 454 >seq7211 Length=36427 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || | ||| | ||||| || ||| || || | |||||||||| Sbjct 7758 CCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCTTTCTGAATGTTGTAATCGGCG 7699 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| ||||||||||| ||||| || || | | ||| || || | ||| Sbjct 7698 AGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGGA 7639 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || ||| | || || || | | |||||| ||| ||| || Sbjct 7638 ATCCCTTCCTTATCCTAAATCTTGGCCTTCACGTTGTCGATGGTGTCG-GAGCTCTCCAC 7580 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAAT 43118 || | ||| || || || ||||| |||||||||||||| || ||||| || || || Sbjct 7579 CTCCAACGTGATGGTCTTGCCGGTCAGAGTTTTCACAAAGATCTGCATCTTTTTGAT 7523 >seq11477 Length=17588 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || ||||||||||| | ||| ||||| || | || ||||||| Sbjct 287 CCTCCACGGAGCCTCAACACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCG 346 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || || ||||| ||||| || || | | ||| || || | || Sbjct 347 AGGGTGCGACCGTCCTCTAACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 406 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | ||||| || | | |||||| ||| ||| || Sbjct 407 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCG-GAGCTCTCCAC 465 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || |||||||||||||| |||||||| || || ||||| || Sbjct 466 CTCCAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 516 >seq10846 Length=19378 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| |||| || | |||||| || | || ||||||||| | |||||||| | Sbjct 11276 CCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAATCAGCT 11335 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || ||||| || ||||| |||||||||| | |||||| || | || Sbjct 11336 AAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGG 11395 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| ||||| || |||| ||||||| | ||| || || ||| ||| || Sbjct 11396 ATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATCAG-AGCTCTCAAC 11454 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || |||||||| || | || || ||||||||||||||| Sbjct 11455 CTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAAAATTTGCATT 11503 >seq3441 Length=50379 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| ||| |||||| || | || || || | Sbjct 14375 CCACCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCA 14434 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || | || ||||| ||||| ||||| | |||||| || | || Sbjct 14435 AGAGTACGACCGTCTTCGAGCTGCTTGCCCGCAAAGATCAACCTCTGTTGGTCTGGTGGG 14494 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| ||||||| || ||| || || | ||| ||||| Sbjct 14495 ATACCCTCCTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTATC-CGAGCTTTCGAC 14553 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| ||||| || || | ||| || |||||||||||||| Sbjct 14554 CTCCAATGTTATTGTTTTACCTGTCAAAGTCTTAACAAAAATTTGCAT 14601 >seq23250 Length=6169 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || | ||| | ||||| || ||| || || | ||||||||||| Sbjct 5883 CCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCTTTCTGAATGTTGTAATCGGAG 5824 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| ||||||||||| ||||| || || | | ||| || || | ||| Sbjct 5823 AGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGGA 5764 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || ||| | || || || | | |||||| ||| ||| || Sbjct 5763 ATCCCATCCTTATCCTAAATCTTGGCCTTCACGTTGTCGATGGTGTCG-GAGCTCTCCAC 5705 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | || || || || ||||| |||||||||||||| || ||||| || || Sbjct 5704 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACAAAGATCTGCATCTTTTT 5651 >seq16751 Length=10463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||| |||| | ||| || | || || | ||||||||||||||| Sbjct 6785 TCCTTTTGGATATTGTAGTCGGCAAGTGTGCGACCATCTTCAAGTTGTTTGCCGGCAAAG 6844 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| | ||| || || | || | ||| || || || || ||||||| | Sbjct 6845 ATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTA 6904 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| ||| ||| || || | || || |||||||| || | || ||||| Sbjct 6905 TCAATGGTGTC-AGAGCTCTCAACTTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTCAC 6963 Query 43098 AAAAATTTGCATT 43110 ||||||||||||| Sbjct 6964 AAAAATTTGCATT 6976 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| | | |||||| || | || ||||||||| | ||||||||||| Sbjct 6293 CCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCGGCT 6352 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || ||||| || ||||| |||||||||| | |||||| || | || Sbjct 6353 AAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGG 6412 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| |||| || | | | || || | ||| || Sbjct 6413 ATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAACC 6472 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || | || || ||||||||||||||| Sbjct 6473 TCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCATT 6520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380748686076162