Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq8957 111 1e-19
seq12926 104 2e-17
seq93805 102 6e-17
seq7211 96.9 3e-15
seq11477 95.1 9e-15
seq10846 95.1 9e-15
seq3441 93.3 3e-14
seq23250 91.5 1e-13
seq16751 84.2 2e-11
>seq8957
Length=24100
Score = 111 bits (122), Expect = 1e-19
Identities = 167/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
|||||| || |||| | || | || | |||| ||| || || | |||||| ||||
Sbjct 15734 GCCTCCGCGGAGTCGCAGAACGAGGTGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGC 15793
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
| ||||| |||| |||||||| || ||||| || ||||||||||| ||||||| |||
Sbjct 15794 GAGAGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGATCGGGCGG 15853
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060
| ||||| || || |||| | || || || | | |||||| ||| ||| |
Sbjct 15854 GATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCG-GAGCTCTCCA 15912
Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115
| || | ||| || || || ||||| ||||||||||| || || ||||| || ||
Sbjct 15913 CCTCCAACGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCATCTTTTT 15967
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| || || | ||| | ||||| ||| ||| || || | |||||||||||
Sbjct 15507 CCTCCACGGAGCCTGAGCACGAGATGGAGAGTTGACTCTTTCTGGATATTGTAATCGGCG 15566
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| | || |||||||| |||||||| || || | || ||| || || | |||
Sbjct 15567 AGGGTACGGCCTTCCTCCAATTGCTTGCCGGCGAAGATGAGTCTCTGCTGGTCCGGCGGA 15626
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| ||||| || || |||| | || || | | | |||||| ||| ||| ||
Sbjct 15627 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCG-GAGCTCTCCAC 15685
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || || || ||||| || ||||| || || || |||||
Sbjct 15686 CTCCAAGGTGATCGTCTTACCGGTCAGGGTTTTGACGAAGATCTGCAT 15733
>seq12926
Length=15191
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| || || ||||||||||| | ||| ||||| || | || |||||||
Sbjct 297 CCTCCACGGAGCCTCAACACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCG 356
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || || |||| ||||||||||| ||||| || || | | ||| || || | ||
Sbjct 357 AGGGTGCGACCGTCCTCCAATTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 416
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| ||||| || || |||| | ||||| || | | |||||| ||| ||| ||
Sbjct 417 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCG-GAGCTCTCCAC 475
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| | || || |||||||||||||| |||||||| || || ||||| ||
Sbjct 476 CTCCAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 526
>seq93805
Length=797
Score = 102 bits (112), Expect = 6e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940
|||| ||||| ||||| ||||||||||| | ||| |||||| || | ||||| ||||
Sbjct 589 CGCCACCACGGAGTCTCAACACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 530
Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000
||| || || | || |||||||| |||||||| || ||||||||||| || |||| |
Sbjct 529 ACAGAGTTCGGCCATCCTCCAATTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTG 470
Query 43001 GCACACCTTCTTTTTC 43016
| | ||||| || ||
Sbjct 469 GGATTCCTTCCTTGTC 454
>seq7211
Length=36427
Score = 96.9 bits (106), Expect = 3e-15
Identities = 165/237 (70%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| || || | ||| | ||||| || ||| || || | ||||||||||
Sbjct 7758 CCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCTTTCTGAATGTTGTAATCGGCG 7699
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| |||| ||||||||||| ||||| || || | | ||| || || | |||
Sbjct 7698 AGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGGA 7639
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| ||||| || || ||| | || || || | | |||||| ||| ||| ||
Sbjct 7638 ATCCCTTCCTTATCCTAAATCTTGGCCTTCACGTTGTCGATGGTGTCG-GAGCTCTCCAC 7580
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAAT 43118
|| | ||| || || || ||||| |||||||||||||| || ||||| || || ||
Sbjct 7579 CTCCAACGTGATGGTCTTGCCGGTCAGAGTTTTCACAAAGATCTGCATCTTTTTGAT 7523
>seq11477
Length=17588
Score = 95.1 bits (104), Expect = 9e-15
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| || || ||||||||||| | ||| ||||| || | || |||||||
Sbjct 287 CCTCCACGGAGCCTCAACACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCG 346
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || || |||| || || ||||| ||||| || || | | ||| || || | ||
Sbjct 347 AGGGTGCGACCGTCCTCTAACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 406
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| ||||| || || |||| | ||||| || | | |||||| ||| ||| ||
Sbjct 407 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCG-GAGCTCTCCAC 465
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| | || || |||||||||||||| |||||||| || || ||||| ||
Sbjct 466 CTCCAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 516
>seq10846
Length=19378
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| |||| || | |||||| || | || ||||||||| | |||||||| |
Sbjct 11276 CCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAATCAGCT 11335
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| || | | | || ||||| || ||||| |||||||||| | |||||| || | ||
Sbjct 11336 AAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGG 11395
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| ||| ||||| || |||| ||||||| | ||| || || ||| ||| ||
Sbjct 11396 ATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATCAG-AGCTCTCAAC 11454
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| | || || |||||||| || | || || |||||||||||||||
Sbjct 11455 CTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAAAATTTGCATT 11503
>seq3441
Length=50379
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | | ||||||||||| ||| |||||| || | || || || |
Sbjct 14375 CCACCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCA 14434
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| |||| || | || ||||| ||||| ||||| | |||||| || | ||
Sbjct 14435 AGAGTACGACCGTCTTCGAGCTGCTTGCCCGCAAAGATCAACCTCTGTTGGTCTGGTGGG 14494
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| ||| || || || |||| ||||||| || ||| || || | ||| |||||
Sbjct 14495 ATACCCTCCTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTATC-CGAGCTTTCGAC 14553
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | ||||| ||||| || || | ||| || ||||||||||||||
Sbjct 14554 CTCCAATGTTATTGTTTTACCTGTCAAAGTCTTAACAAAAATTTGCAT 14601
>seq23250
Length=6169
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/234 (69%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| || || | ||| | ||||| || ||| || || | |||||||||||
Sbjct 5883 CCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCTTTCTGAATGTTGTAATCGGAG 5824
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| |||| ||||||||||| ||||| || || | | ||| || || | |||
Sbjct 5823 AGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGGA 5764
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| || || || || ||| | || || || | | |||||| ||| ||| ||
Sbjct 5763 ATCCCATCCTTATCCTAAATCTTGGCCTTCACGTTGTCGATGGTGTCG-GAGCTCTCCAC 5705
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115
|| | || || || || ||||| |||||||||||||| || ||||| || ||
Sbjct 5704 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACAAAGATCTGCATCTTTTT 5651
>seq16751
Length=10463
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
|||||||| | |||||| |||| | ||| || | || || | |||||||||||||||
Sbjct 6785 TCCTTTTGGATATTGTAGTCGGCAAGTGTGCGACCATCTTCAAGTTGTTTGCCGGCAAAG 6844
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
||||| | ||| || || | || | ||| || || || || ||||||| |
Sbjct 6845 ATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTA 6904
Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
||| ||||| ||| ||| || || | || || |||||||| || | || |||||
Sbjct 6905 TCAATGGTGTC-AGAGCTCTCAACTTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTCAC 6963
Query 43098 AAAAATTTGCATT 43110
|||||||||||||
Sbjct 6964 AAAAATTTGCATT 6976
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||||| | | |||||| || | || ||||||||| | |||||||||||
Sbjct 6293 CCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCGGCT 6352
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| || | | | || ||||| || ||||| |||||||||| | |||||| || | ||
Sbjct 6353 AAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGG 6412
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||| || || || |||| |||| || | | | || || | ||| ||
Sbjct 6413 ATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAACC 6472
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| | || || ||||| || || | || || |||||||||||||||
Sbjct 6473 TCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCATT 6520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380748686076162
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