Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq78534 178 2e-39 seq57685 145 1e-29 seq11270 125 1e-23 seq588 89.7 7e-13 seq72010 84.2 3e-11 >seq78534 Length=1057 Score = 178 bits (196), Expect = 2e-39 Identities = 388/572 (68%), Gaps = 12/572 (2%) Strand=Plus/Minus Query 71701 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTG 71760 ||||| || ||||| ||||| || || |||| | | | | ||| | || ||||| ||| Sbjct 654 ACAGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGTG 595 Query 71761 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 71820 || || || ||||||| ||||| | || | ||| || ||||| ||| || ||| Sbjct 594 CAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCA 535 Query 71821 TCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 71880 || || || || || || ||| | ||||| ||| |||||| || || || || | ||| Sbjct 534 TCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCAC 475 Query 71881 ACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCT--CTT-TCGTATTGTGTATA 71936 | | || ||||||| ||| | || | | |||| || ||| || |||| || | Sbjct 474 A-GTTTCTGAGCCTTAATTGT---CTGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGAA 419 Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCATT--GTCTAATCCAGGACATTCATTCGGACAC 71994 || ||||| ||||| || | ||| | | | || |||||||||||||| |||||| Sbjct 418 CAAGGCCTCGAATTCGTCGCCGTA-GCAGTCAGACAAA-CCAGGACATTCATTGGGACAC 361 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 |||| || ||| ||| ||| | | |||||| ||||| || || ||||||||||| ||| Sbjct 360 ATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAGA 301 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || || |||||||||| ||| || || || || |||||| | | | ||| Sbjct 300 GCGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAGC 241 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 || | | | ||||| ||||| || || | ||| ||||| | | || || | ||| Sbjct 240 CACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTTG 181 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || || ||||| | ||| | ||| ||||| | | | |||| || ||| || | | | Sbjct 180 TTGCCGCCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAGA 121 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATA 72266 || || || | || || || || | ||| || Sbjct 120 CCGTTCGAAGTGCCGTTTGTACCCGCGATGTA 89 >seq57685 Length=1792 Score = 145 bits (160), Expect = 1e-29 Identities = 384/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || ||||| ||||||| | ||| ||||||| | | || || ||||| Sbjct 1216 CCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCATTCTGCTCGACACGCTTCATG 1275 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 || ||||| |||||||| || || ||| || || || | | | |||||| || || Sbjct 1276 AAAAGATCGGGAATCCAGAGTGC-ATAGAAGAGGTCACGAGCACGGACCTCCTCCTTGCC 1334 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||||| |||||| ||||| || | | ||||| ||||| || || | ||| || Sbjct 1335 GTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTACAT 1394 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 ||| | | || || || ||||| || || || || | || | ||| || || || | Sbjct 1395 GGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACATAACGAGCAGTATTGTTGAA 1454 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 || | | |||||| | | ||||||||||| |||||||| ||| || || || Sbjct 1455 GACACGAAGCATTGGTACCAGACCATTGGATGTGCCATTGGTGCCGCCAATGTACGAACC 1514 Query 72273 ACTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 | | ||||| || | || ||| | || || || || || | || ||||| | | Sbjct 1515 AGTCGCACGGATGCGGTGAACGTTG--AACCCGATGCCGCCAGCATTCTTCGAGATCATT 1572 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 ||||| || | ||||| ||||| ||||| || || || ||| | | || | || Sbjct 1573 GCGCAGGTCTTGAGTGTATCGTAGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGG 1632 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || ||| | || || | ||| || ||| | || | || || ||||||||| Sbjct 1633 AAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGCACTGAAGAGTGTCGGCGAAGCGTGC 1692 Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509 || || | || | |||| |||| ||||| ||||| || || | || |||||| Sbjct 1693 GTGAAGTACTTGTTTGACATGTAG-TTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCC 1751 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 ||| || || || ||||||||||| | ||| |||||||| Sbjct 1752 ATGAATGCCAACGGCGACACGCATGATCATCTGCTGAGG 1790 >seq11270 Length=18388 Score = 125 bits (138), Expect = 1e-23 Identities = 375/576 (65%), Gaps = 2/576 (0%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||||||||| || || || |||| || || |||||||| || || | Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||||| || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 || ||||| || || || || || || ||||| | | | | | | | || Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGCGAACGATTCTCCGCCGTCGAT 5666 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||| | ||||| ||||||||||| || ||||| | || || || || | || Sbjct 5667 CCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAA 5726 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 || ||| || || || || | ||| || |||| ||| ||||| |||||||| Sbjct 5727 CAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTC 5786 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || || || || || || ||||| || || |||||| | ||||| | ||| || Sbjct 5787 AGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACTTG 5846 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || || | || | | | || | ||| || || || ||||| ||| || || Sbjct 5847 GACCTCCTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAA 5906 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 || || | || || | | || | | ||| | |||| || | ||| | | Sbjct 5907 GAAGGCGAGCACGTGAGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAGTGACG 5966 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 | || || | ||| || || ||| | ||||| || || || || ||||| || || Sbjct 5967 TAAGTCGCCGGAGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTA 6026 Query 42604 CATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 ||| | |||||| || | || ||||| ||||| || Sbjct 6027 CATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 6062 >seq588 Length=109198 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | |||| || || | ||| | || | | |||||||| ||| ||| Sbjct 13262 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 13203 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || ||||| || || | |||||||||||| || ||| Sbjct 13202 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGAG 13143 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| || || ||| || | || || |||||| || ||||| ||| Sbjct 13142 ACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATATG 13083 Query 72358 CCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 13082 CCTTCAATACTATCATCTTTCATG 13059 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 |||||||| || || || || ||| || || | ||| |||||| || | || || Sbjct 13712 TCTCTTTCATACTGGGTGTACAATTTCTCAAATTTGTCACCCCAACAATCTGCCAAACCT 13653 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAA 72034 ||| | ||||| || || | ||||||||| ||||||| | ||| |||| || ||| | Sbjct 13652 GGAGACTCATTAGGGCAAAACAATGACCATTCTCCAT--TGCTTTGAACTCTTTCCATGA 13595 Query 72035 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||||||||||| ||||||||| ||| ||||| | | | || |||||| Sbjct 13594 AGAGATCAGGAACCCAAAGAGCATAAAACAGATCACGTGCACGATTCTCCTC 13543 >seq72010 Length=1221 Score = 84.2 bits (92), Expect = 3e-11 Identities = 198/295 (67%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || || ||||| |||||||||| ||| ||||| || || || ||||| || || Sbjct 1005 TCCTTGACATAGGTATCGATCAGGAGAGAGTACATCTCAGAGTGGATGTTCTCGATCATG 946 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC- 42444 ||||| || || ||||| || | || || | || || ||||| | ||||| || Sbjct 945 ATCTGGAAACCATAGAAGCAACGAGCTTCTGGTACTTGAACTTCACCTGAGAATCGCTCG 886 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 ||| || || ||||| || || || || ||| || || || || | || || || Sbjct 885 AGC-AAGTTCTCGTTTACGATACCATCGGAGGCAGCGAAGAAGGCGAGAACGTGAGAGAT 827 Query 42505 AAAATATTTTTCGTCCGGTGTTAAT----TTATTCCAATCATTGATATCTTTAGATATAT 42560 ||| || || || ||||| || ||||| || | | ||| || |||| || Sbjct 826 AAAGTAACGCTCATCATC-GTTAAGACGGTTGTTCCAGTCGTGAAGATCCTTGGATAGAT 768 Query 42561 CTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 | || ||||| | ||||| || ||||||||||| || || ||||| | |||||| Sbjct 767 CGACCTCTTCAGCAGTCCAGAAGGATGCTTCTGCTTTCTTGTACATTTGCCAGAT 713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670018489817640