Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1750 93.3 4e-14 seq104979 84.2 2e-11 seq10846 84.2 2e-11 >seq1750 Length=74028 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTT 143033 || ||||| | || || ||||| ||||||||||| || || ||| |||| || | Sbjct 62218 ACCAAATGCAAGGTGGACTCTTTCTGTATGTTGTAGTCAGCCAATGT--TCGACCATCCT 62161 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093 | || || || |||||| ||||||| | |||||||| ||||| || ||||| ||||| Sbjct 62160 CAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATACCTTCCTTGTCTT 62101 Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 ||||| ||| | | || | ||||| | | ||| ||||| | ||| | |||| Sbjct 62100 GTATTTTCGCTTTGACATTGTCAATTGTGTCAGAGCTTTCAACTTCCAAAGTGATTGTCT 62041 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || || | ||||| || ||||| |||||| Sbjct 62040 TTCCTGTAAGAGTTTTAACAAATATCTGCATA 62009 >seq104979 Length=655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| || || || | ||||| || || || |||||||||||| | Sbjct 93 CCGCCGCGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGAC 152 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || ||||| ||||| || || |||||||||||||||| || || || Sbjct 153 AAAGTGCGTCCA-TCCTCGAGCTGTTTGCCGGCGAAGATCAGACGTTGCTGGTCTGGTGG 211 Query 143077 TATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 212 AATCCCTTCCTTGTC 226 >seq10846 Length=19378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| ||| || || ||||| ||||| || ||| || |||| |||||| Sbjct 11978 ACCAAGTGAAGTGTGGACTCCTTTTGGATGTTATAGTCGGCCAAAGTGCGACCATCTTCG 12037 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 ||||| ||||||||| |||||| | |||||| || || || || || || ||||| Sbjct 12038 AGTTGCTTACCAGCAAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGG 12097 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | || | ||||| | | ||| || || | || | |||||| Sbjct 12098 ATCTTAGCTTTGACATTATCAATAGTGTCTGAGCTTTCGACCTCGAGGGTGATGGTCTTG 12157 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || || || || || ||||| Sbjct 12158 CCGGTCAGAGTCTTAACAAAGATCTGCAT 12186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506167755666480