Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq99200 174 2e-38 seq72010 149 9e-31 seq57685 140 5e-28 >seq99200 Length=725 Score = 174 bits (192), Expect = 2e-38 Identities = 346/501 (69%), Gaps = 20/501 (4%) Strand=Plus/Minus Query 125064 GAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGA 125122 |||||||| ||||| || || || || |||| ||| | | | | | || || ||| Sbjct 725 GAAGAGGTGGATCTCTCAAAAGATATGCACGACTGGCACAACAAGCTCAAC-GACGATGA 667 Query 125123 GCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGA 125182 | || | ||||| || ||| | | || ||||| || | ||| || || || |||||||| Sbjct 666 GAGATACTTTATCTCACACGTCCTTGCTTTCTTCGCTGCCTCTGACGGTATTGTCAACGA 607 Query 125183 CAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTAC 125240 || || || || | ||||||| ||| || | ||||||| ||| |||||||| Sbjct 606 GAACCTTGTCGAGA-GATTCTCGGGTGAGGTGCAAGTACCAGAGGC-TCGATGCTTTTAT 549 Query 125241 GGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATG 125300 || ||||| |||||||| ||||| | ||||| ||||||||| || ||||| Sbjct 548 GGTTTCCAGATCATGATGGAGAATATCCACTCCGAAATGTACAGCTTGCTCATTGA---- 493 Query 125301 TACATTCGCGAT----CCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC 125356 |||||| | || || | | ||||| ||||| | || |||||||| | || Sbjct 492 TACATTTGTGAAAGAGCCAAAGCAGAAACAGTACCTCTTCGATGCTATCGACACTATTCC 433 Query 125357 GTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATC---GATGACGACAAGTCTTC 125413 | || || || |||||| | |||| | | | |||||| ||| | || ||| | Sbjct 432 ATGCATCCGCAAGAAGGCTGAGTGGGCGTTGAGATGGATCTCTGATAAGGA-AAGCAGT- 375 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 | |||| | | |||||||||||||||||||| |||||||||||||| || || ||| Sbjct 374 -TTCGCCCAACGTCTGGTGGCATTCGCCGCCGTTGAGGGCATCTTCTTCTCCGGGTCTTT 316 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA 125533 || |||| || |||||||||||| | || |||||||| || ||||| | ||||| Sbjct 315 CGCCTCCATTTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGTCTGACATTCTCCAACGA 256 Query 125534 GTTTATATCTCGAGACGAGGG 125554 | | || ||||| || || || Sbjct 255 GCTGATCTCTCGTGATGAAGG 235 >seq72010 Length=1221 Score = 149 bits (164), Expect = 9e-31 Identities = 204/280 (73%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| || || | || ||||| ||||| | |||||||||||||| Sbjct 713 ATCTGGCAAATGTACAAGAAAGCAGAAGCATCCTTCTGGACTGCTGAAGAGGTCGATCTA 772 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | ||| | | || |||||| | ||||| || Sbjct 773 TCCAAGGATCTTCACGACTGGAACAACCGTCTTAACGATGATGAGCGTTACTTTATCTCT 832 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | |||||||| || | ||||||||| ||||| ||||| || || | ||| Sbjct 833 CACGTTCTCGCCTTCTTCGCTGCCTCCGATGGTATCGTAAACGAGAACTTGCTCGAGCGA 892 Query 125199 TTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||||| | |||| | | ||||| | ||| ||||| || || ||||| ||||||| Sbjct 893 TTCTCAGGTGAAGTTCA-AGTACCAGAAG-CTCGTTGCTTCTATGGTTTCCAGATCATGA 950 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 | |||||| | ||||| || ||||||||| ||||| || Sbjct 951 TCGAGAACATCCACTCTGAGATGTACTCTCTCCTGATCGA 990 >seq57685 Length=1792 Score = 140 bits (154), Expect = 5e-28 Identities = 318/473 (67%), Gaps = 4/473 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || ||||| || || || ||||| | ||| | ||| | || || |||||||| || Sbjct 1427 CAAGGTGGCAACAAGCGTCCCGGCGCCTTTGCCATGTACCTCGAGCCATGGCACGCTGAT 1368 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || | ||| | || | ||||| ||| ||| || |||| || || | ||| Sbjct 1367 GTCTTCGCCTTCCTGGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGTGAC 1308 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || |||||||||||| | || ||| | ||||||||||| ||| | | ||| | Sbjct 1307 CTCTTCTATGCACTCTGGATTCCCGATCTTTTCATGAAGCGTGTCGAGCAGAATGGAGAT 1248 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || |||||||| || || || ||||| | || || ||||| ||||| Sbjct 1247 TGGACGCTGATGTGCCCGAACGAGTGCCCTGGTCTTGCTGACGTCTATGGCGATGAGTTC 1188 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| |||||| | ||||| || |||||||| ||| |||| Sbjct 1187 GAGGCTCTCTACAACAAGTACGAGAAGGAGGGTCGTGGTCGTGAGACCGTTCG-CGCAC- 1130 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||||||| ||||||||| | ||| | ||| |||| Sbjct 1129 AGAAGCTATGGTACGCCATCCTCGAGGCTCAGACAGAGACTGGCAATCCTTTCATGCTCT 1070 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||| ||| | || ||||| ||||| || || | || ||| |||||| Sbjct 1069 ACAAAGATGCTTGCAACCGCAAAAGCAATCAGAAGAACCTCGGTGTCATTCGCAGCTCCA 1010 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 |||| ||||| || || | ||||| | |||| || ||| || |||||| Sbjct 1009 ATCTCTGCACAGAGATCATTGAGTATACTGCTCCTGATGAGGTTGCTGTTTGC 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739821733031640