Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004685.1 Length=69777 Score E Sequences producing significant alignments: (Bits) Value seq64155 113 2e-20 >seq64155 Length=1483 Score = 113 bits (124), Expect = 2e-20 Identities = 215/308 (70%), Gaps = 14/308 (5%) Strand=Plus/Minus Query 55601 ACCCGGTCGGGCTCGCCCAGCTCCAGCCGCTGATCGTTCTCGGTGATCTGCTGCACCAGC 55660 |||||||| | ||| ||| | | |||| || ||||||||| | ||||| ||| | | Sbjct 1182 ACCCGGTCCGTGTCGGTCAGATGCTGCCGGTGCTCGTTCTCGACCAACTGCTCCACGATC 1123 Query 55661 CGGGTCGCCGTG---TCCAGCTCAGCCGGGATCACATACACCGGCACCTCTGTCAGCTCA 55717 || |||||||| || || ||| | | || || ||||| | | | | | | Sbjct 1122 CGCCTCGCCGTGGAGTCGTCATCGGCCCGCACGAC-TAGACCGGGATCGTGGCGATCGCG 1064 Query 55718 GCCTCCCGCGCTGCGAGGGTGCGACGCTGGCCGGCACGGACATGCAGCACTCCGTCCTCG 55777 ||||| ||||||||||||||||| |||||||| ||||||||||||| | ||||| | Sbjct 1063 GCCTCGCGCGCTGCGAGGGTGCGGCGCTGGCCTGCACGGACATGCACCGTGCCGTCAGAG 1004 Query 55778 CCGCGC-ACCGCGGTGATCGGCACGATGACGCCGTTCTCCTTGATGCTGGCGACGAACT- 55835 ||||| | | ||| || ||| |||| |||||||| | || |||| | | ||||| Sbjct 1003 TCGCGCTATCCCGG-GA-CGGGACGAGGACGCCGTGCGTGCGGACGCTGTCCATGAACTC 946 Query 55836 -GCTTGGTCAGGCTC---GCCTCGGTGCGGACGTTGGCCTCCAGCACCAGCTCATTGGGG 55891 || | |||| || ||||| || |||||||||| ||| | |||||| | ||| Sbjct 945 GGCCT--CCAGGATCAGGGCCTCAGTCCGGACGTTGGTCTCGATCACCAGAGTGGTCGGG 888 Query 55892 TCGACGTG 55899 |||| ||| Sbjct 887 TCGAGGTG 880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 222798267042402