Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004686.1 Length=56276 Score E Sequences producing significant alignments: (Bits) Value seq116094 98.7 4e-16 seq78850 96.9 1e-15 >seq116094 Length=536 Score = 98.7 bits (108), Expect = 4e-16 Identities = 128/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 40002 GCGTTGTGCTCCCAGGTCGATCCCGAGCTGTTCTTCCCCGAAAAGGGAGGAAACGCGAAA 40061 ||| ||||| ||||| ||| |||||| |||||||||||| ||||| || | ||| Sbjct 34 GCGCTGTGCGCCCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGG---CTCGACC 90 Query 40062 CCCG---CAAAGCGGATCTGCGGTATGTGCGACGTCCGGGACGAATGCCTTCAGTGGGCG 40118 | || | ||||| ||||| ||||| ||||| | || ||||| ||| ||| Sbjct 91 CGCGAGGCCAAGCGCGTCTGCCAGTCCTGCGAGGTCCGCCAGGAGTGCCTGGAGTACGCG 150 Query 40119 CTGGACAACAACGAACAGTTCGGCATCTTCGGCGGCCTGTCCGAGCGTGAACGCCG 40174 |||| |||| |||| | ||||||||||| ||||| || ||||| || ||||| || Sbjct 151 CTGGGCAACGACGAGCGGTTCGGCATCTGGGGCGGTCTCTCCGAACGCGAACGTCG 206 >seq78850 Length=1053 Score = 96.9 bits (106), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 40003 CGTTGTGCTCCCAGGTCGATCCCGAGCTGTTCTTCCCCGAAAAGGGAGGAA--ACGCGAA 40060 || ||||| | ||| |||||| ||| ||||||||| |||||||| ||| ||||| Sbjct 549 CGCTGTGCGCGCAGACCGATCCTGAGGCGTTCTTCCCGGAAAAGGGTGGATCGACGCGCG 608 Query 40061 ACCCGCAAAGCGGATCTGCGGTATGTGCGACGTCCGGGACGAATGCCTTCAGTGGGCGCT 40120 | || |||||||||||| |||||| ||| | | ||||| ||| ||||| Sbjct 609 AGGCG--AAGCGGATCTGCACGTCGTGCGAGGTCAAGTCGCAGTGCCTCGAGTACGCGCT 666 Query 40121 GGACAACAACGAACAGTTCGGCATCTTCGGCGGCCTGTCCGAGCGTGAACGCCG 40174 | | ||| |||| | |||||||||| |||||||| |||||||| || ||||| Sbjct 667 GCAGAACGACGAGCGCTTCGGCATCTGGGGCGGCCTCTCCGAGCGCGAGCGCCG 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179676114429084