Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_004687.1
Length=156102
Score E
Sequences producing significant alignments: (Bits) Value
seq82408 91.5 1e-13
seq54899 87.8 2e-12
seq96416 84.2 2e-11
seq87011 84.2 2e-11
seq67087 82.4 8e-11
>seq82408
Length=976
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 117673 ACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGGTTCA 117732
||||| | | ||||||||||||||| |||| ||||| || || | ||||| | ||
Sbjct 892 ACGGCCTGATCGTCTACCAGGAGCAGGTGATGGCGACCGCGCAGAAGGTCGCCGGCTACA 833
Query 117733 CCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAGATCATCA 117792
||| |||| ||||||| | |||||| || || ||||||||||||| ||||||| ||
Sbjct 832 CCCTGGGCCAGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGAAGAAGGAGATCCTCG 773
Query 117793 ACG 117795
|||
Sbjct 772 ACG 770
>seq54899
Length=627
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 116617 GCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCGA 116676
||| |||||| ||||| |||| ||| |||| |||| | | ||||||||| ||
Sbjct 279 GCCAGGGCCGCGGCTCGGCCGCGAACTCCGCGGTCTGCTACCTGCTCGGCATCACCGCGG 220
Query 116677 TCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGACT 116736
||||| ||||||||| ||||||| |||||||||||| || | || ||| |||
Sbjct 219 TCGACTCGATCAAGTTCGACCTGCCGTTCGAGCGCTTCCTCTCCTCGCTGCGCGACGAGG 160
Query 116737 TCCCCGACATCGACGTCGACTTC 116759
|| ||||||||||| ||||||
Sbjct 159 AGCCGGACATCGACGTGGACTTC 137
>seq96416
Length=762
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 117669 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 117728
|||||||||||| ||||||||||||||||| |||| | | |||| ||| ||| |||
Sbjct 500 ACCTACGGCATCATGGTCTACCAGGAGCAGGTGATGCAGATCGCCCAGGTCATGGGCGGC 441
Query 117729 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGA 117777
| ||| ||||| |||||| | |||||| || || ||||||||||
Sbjct 440 TATTCCCTGGGCGGGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGA 392
>seq87011
Length=895
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/147 (73%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 116615 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 116674
|||||| ||||| || |||| || |||||| ||| | |||| ||| | ||||||
Sbjct 76 CGGCCCCGGCCGCGGGTCCGGCGCCGGCTCGATGGCGGCGTACGCGATGCGGATCACCGA 135
Query 116675 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCC 116732
| |||||| | || ||| ||||| |||||||| || | ||||| |||||| | |
Sbjct 136 CCTGGACCCGCTGCAGCACGGGCTGATCTTCGAGCGGTTCCTGAACCCCGACCGCGTCTC 195
Query 116733 GACTTCCCCGACATCGACGTCGACTTC 116759
|| | |||||| ||||||||||||||
Sbjct 196 GA--TGCCCGACTTCGACGTCGACTTC 220
>seq67087
Length=1377
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 94072 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 94131
||||| ||||| |||||||| || || | || ||||||| || || |||||||||||||
Sbjct 246 ACGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGA 305
Query 94132 ATCCTGTCACCCCGACTC 94149
||||||||| ||||| ||
Sbjct 306 ATCCTGTCATCCCGATTC 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 498564473339280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |