Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_004688.1
Length=110865
Score E
Sequences producing significant alignments: (Bits) Value
seq69458 143 2e-29
seq81249 120 2e-22
seq111358 113 3e-20
seq58751 107 1e-18
seq93073 98.7 7e-16
seq101272 86.0 4e-12
>seq69458
Length=1299
Score = 143 bits (158), Expect = 2e-29
Identities = 206/288 (72%), Gaps = 3/288 (1%)
Strand=Plus/Minus
Query 99277 GGCAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATC 99336
||||| || | | |||| ||| || | ||| | |||||| || || |||||| |
Sbjct 1297 GGCAGGAACAGCGCGTCGCCCTGACCGACGAGCTTCTCGGCCCCCGGCTGGTCCAGCACG 1238
Query 99337 ACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTG 99396
|||||| || | ||| || || ||||||| ||||||||||||||||||| ||||
Sbjct 1237 ACCCGGGAGTCCGCGAGCGAACTCGTCGCGAACGCCAGCCGCGAGGGCACGTTGGCCTTG 1178
Query 99397 ATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCG 99456
||||| |||||||| || || |||||||| ||||| ||||| || || || || ||||||
Sbjct 1177 ATGAGCCCCGTCACGACGTCGACGGAGGGGCGCTGGGTCGCGAGCACCAGGTGGATGCCG 1118
Query 99457 GCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCCA 99516
|| || || || ||| | |||||| ||| |||||| || || | | || |
Sbjct 1117 GCGGCCCGGGCGAGCTGGGTGATGCGCTGGATGGAGGCCTCGACGTC--GCGCGGGGCGA 1060
Query 99517 CCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGG 99564
||||||| || || ||||| || || || || |||| | ||| |||
Sbjct 1059 -CCATCATCAGGTCGGCGAGCTCGTCGACGACCACCAGCAGGTACGGG 1013
Score = 120 bits (132), Expect = 2e-22
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 99691 AGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGT 99750
||||| ||||| || | ||| |||||||| || | |||||||| | || | |
Sbjct 826 AGGTGCGGGATGCCCTCGTAGATCGTGAGCTCCACGCGCTTGGGGTCCACCAGCACCATG 767
Query 99751 TTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTG 99810
|||| || ||||| || || ||| | ||| | ||| ||||| | ||||||
Sbjct 766 CGGACCTCGTCGGGGGTGGCGCGCATGAGGATCGAGGTGATCATCGAGTTCACGAAGCTC 707
Query 99811 GACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGG 99870
||||||||||| |||||||| || || || ||||| || |||||||| || |||||| |
Sbjct 706 GACTTGCCCGAGCCGGTCGCCCCGGCGACGAGCAGGTGGGGCATCTTCGCGAGGTTCGCG 647
Query 99871 GAGATGTCCTTGCCCTCGACGTCCTTGCCCACTGCCACGGTCAACGGATGGTCGTC 99926
|| | |||||||||||||||||||| | ||||||| ||| |||| |||
Sbjct 646 ACGACGAAGCCGCCCTCGACGTCCTTGCCCAGCCCGACGGTCATCGGGTGGTGGTC 591
>seq81249
Length=1001
Score = 120 bits (132), Expect = 2e-22
Identities = 199/283 (70%), Gaps = 12/283 (4%)
Strand=Plus/Minus
Query 80266 CCTCGGCGACTGCCGGGGCGTCTTAGCGAGTTTTCCTGACGCCAGTGTCGATGCAATTCT 80325
|||||||||||||| | |||| | || | || |||| ||| || | || | |
Sbjct 283 CCTCGGCGACTGCCTCGACGTCCTCCGGAAGCTGCCCGACGGCAGCGTGCACGCCGTCGT 224
Query 80326 CACAGACCCGCCCTACGAACTGGGATTCATGGGCAAGAAGTGGGACGGCTCGGGCATCGC 80385
||| || |||||||||| || | ||||||||| | ||||| ||| | ||
Sbjct 223 CACCGATCCGCCCTACGCCCTCGACTTCATGGGCCACGGCTGGGATCGCTACACCCCCGG 164
Query 80386 C---TTCGAC-----GT-CGAGATGTGGGA-GC--AATGCCTGCGGGTCCTCAAGCCCGG 80433
| ||| | || |||| ||||| || | ||||| || ||||||| |||||
Sbjct 163 CGAGTTCCAGCACTGGTGCGAGCAGTGGGCCGCCGAGTGCCTCCGCATCCTCAAACCCGG 104
Query 80434 TGGGCACCTGCTCGCCTTCGGCGGCTCCCGCACCTGGCACCGGCTGACCGTGGCCATCGA 80493
||||| || |||||||||||||| | ||||||| ||||| || | | | |||||
Sbjct 103 CGGGCAGCTCCTCGCCTTCGGCGGTACTCGCACCTTCCACCGCCTCGCTGCCGGAATCGA 44
Query 80494 GGACGCCGGGTTTGAGATCCGCGACTCGATCGCCTGGCTGTAC 80536
||||||||| || |||||||||||||||||||| ||||| |||
Sbjct 43 GGACGCCGGATTCGAGATCCGCGACTCGATCGCGTGGCTCTAC 1
>seq111358
Length=586
Score = 113 bits (124), Expect = 3e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 99218 CGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACTG 99277
||||||| | ||| ||| | |||||||| || ||||| || ||| || |||| |
Sbjct 205 CGATCTCGGCCTCGTTGACCCAGGCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCG 146
Query 99278 GCAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCA 99337
|||| || | |||||| ||| || | || | || || ||| ||| |||||||||||
Sbjct 145 GCAGGAACAGCCCGTCGCCCTGGCCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCA 86
Query 99338 CCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGA 99397
||||||| |||||| ||||| |||||| | || || ||||||||| |||||
Sbjct 85 CCCGGCTGTCGGTGGAGGACGACACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGA 26
Query 99398 TGAGGCCCGTCACCACATCCACGGA 99422
| ||||| || ||||| || |||||
Sbjct 25 TCAGGCCGGTGACCACGTCGACGGA 1
>seq58751
Length=1734
Score = 107 bits (118), Expect = 1e-18
Identities = 221/322 (69%), Gaps = 10/322 (3%)
Strand=Plus/Plus
Query 99585 GCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCT-CTACGGTGAGCCACC 99643
||| ||||| || | |||||| || || ||||| ||||||| || | | |||
Sbjct 1275 GCGAACGCCCACCGACGACATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC-CCATT 1333
Query 99644 GCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATAC 99703
||||| |||||||| | | | || || || ||||| || |||||||||||
Sbjct 1334 TCAGCGCGCGCACCGCCTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGT 1393
Query 99704 CGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCA 99762
||| |||| | | | ||||| ||| ||||||||||||||||| | | | | ||
Sbjct 1394 CGTCGTACATGCTCAACTCGA-GCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCG 1452
Query 99763 GGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGAT 99822
|| ||| ||||||||||||||| | | ||| |||||| | |||||||||||
Sbjct 1453 GGCGTCAGCCGGTAGAGCAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAG 1512
Query 99823 CCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCC--- 99879
||||| | ||| || ||||||| |||||||| || |||| || |||| ||
Sbjct 1513 CCGGTGGTGCCCGCAACCAGCAAGTGCGGCATGGGGGCGAGGT---CGGTGATGACCGGA 1569
Query 99880 TTGCCCTCGACGTCCTTGCCCA 99901
| ||| ||| || ||||||||
Sbjct 1570 TCGCCGGCGATGTTCTTGCCCA 1591
Score = 86.0 bits (94), Expect = 4e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 99367 AACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGC 99426
||||| | |||| |||| ||| |||||||| ||| || | || || || || |||
Sbjct 946 AACGAGATGCGCGTCGGCAGATTGGCCTTGATGACGCCGGTGATGACGTCGACCGACGGC 1005
Query 99427 CGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGC 99476
||||||||||||| || ||| || ||||| ||||| |||||||| |||||
Sbjct 1006 CGCTGCGTCGCCATGATGAGGTGGATGCCCGCCGCGCGCGCCTTTTGCGC 1055
>seq93073
Length=808
Score = 98.7 bits (108), Expect = 7e-16
Identities = 117/157 (75%), Gaps = 4/157 (3%)
Strand=Plus/Minus
Query 54359 TCCCCCGGATCACCCCGCACGACCTCCGGCACACCTGCGCCTCGCTGGCCATCTCCTCCG 54418
|||| | | |||| | |||||||||||| |||||| ||| || || ||| |||||
Sbjct 194 TCCCGCCGCTCACGCTGCACGACCTCCGACACACCGCCGCGAGCCTCGCGATCCGCTCCG 135
Query 54419 GCGCCAACGTCAAGGCGGTCCAGAACCTTCTGGGACACGCCACCGCGGTGATGACTTTGG 54478
|||| ||||| ||||| |||||| | | || ||||||||| |||| | |||||| | |
Sbjct 134 GCGCGAACGTGAAGGCAGTCCAGCGCATGCTCGGACACGCCTCCGCAGCCATGACTCTCG 75
Query 54479 ACCTCTACGGGCATTTGCTTTCG--GACGATTTGGAC 54513
|| |||||| || || |||| |||||| |||||
Sbjct 74 ACGTCTACGCCGATCTG--TTCGACGACGATCTGGAC 40
>seq101272
Length=699
Score = 86.0 bits (94), Expect = 4e-12
Identities = 213/322 (66%), Gaps = 6/322 (2%)
Strand=Plus/Minus
Query 101408 GTCGAGCAGGATCGGATCGACCTCCCCGGCCGGCACGAACTCCACGACGTCAATCACCTT 101467
||||| | ||| ||| |||| || | || |||||||||||| ||||| || ||| |
Sbjct 521 GTCGAACCGGACCGGGTCGATCTGCTCGCTCGGCACGAACTCGACGACCTCGATCTCGCG 462
Query 101468 GTTGTTTTCGCTGGGCAGCTCTGCCAAGTCCTCATCGGTCAGTAGGGCGGTTTGCCCGTC 101527
| | ||| |||||| | | ||| || ||| || | | |||| ||| |
Sbjct 461 GCTCCGCTCGACGGGCAGGGCCTTGAGGTCGTCGCTGGTGAGGACGACGGTGGTGCCGCC 402
Query 101528 GACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCCCCACACGTCTCACAGAC 101587
||||| || ||||| | | ||||| || |||| || ||| ||| ||| ||
Sbjct 401 CTCCTCGTACGCCTTGTCGATGTCGGCGTAGTCGACCGTCTTCCCGCACACCTCGCA--- 345
Query 101588 CTTGTG---GTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTC 101644
|||| | |||||| || |||||||||||| | ||||| || | || ||| |||
Sbjct 344 CTTGCGCTCGTAGCGGATGCGCCCGCCGTCCGCGCCGTGCACCTGGTGCAGGCTCACGTC 285
Query 101645 ATGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAACCCAAAGTTGACCGC 101704
|| |||| ||||| ||| | | ||||| ||||| |||| || || ||| |||
Sbjct 284 GTGGTCCTGCGTGGCGCTGTAGAGCCGGACCGGGACGTTCACCAGGCCGAACGTGATCGC 225
Query 101705 GCCTGTCCAAACTGCTCGCATG 101726
|| ||||| | |||| ||||
Sbjct 224 CCCGGTCCAGATCGCTCTCATG 203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354065799753954
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