Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq69458 143 2e-29 seq81249 120 2e-22 seq111358 113 3e-20 seq58751 107 1e-18 seq93073 98.7 7e-16 seq101272 86.0 4e-12 >seq69458 Length=1299 Score = 143 bits (158), Expect = 2e-29 Identities = 206/288 (72%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 99277 GGCAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATC 99336 ||||| || | | |||| ||| || | ||| | |||||| || || |||||| | Sbjct 1297 GGCAGGAACAGCGCGTCGCCCTGACCGACGAGCTTCTCGGCCCCCGGCTGGTCCAGCACG 1238 Query 99337 ACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTG 99396 |||||| || | ||| || || ||||||| ||||||||||||||||||| |||| Sbjct 1237 ACCCGGGAGTCCGCGAGCGAACTCGTCGCGAACGCCAGCCGCGAGGGCACGTTGGCCTTG 1178 Query 99397 ATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCG 99456 ||||| |||||||| || || |||||||| ||||| ||||| || || || || |||||| Sbjct 1177 ATGAGCCCCGTCACGACGTCGACGGAGGGGCGCTGGGTCGCGAGCACCAGGTGGATGCCG 1118 Query 99457 GCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCCA 99516 || || || || ||| | |||||| ||| |||||| || || | | || | Sbjct 1117 GCGGCCCGGGCGAGCTGGGTGATGCGCTGGATGGAGGCCTCGACGTC--GCGCGGGGCGA 1060 Query 99517 CCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGG 99564 ||||||| || || ||||| || || || || |||| | ||| ||| Sbjct 1059 -CCATCATCAGGTCGGCGAGCTCGTCGACGACCACCAGCAGGTACGGG 1013 Score = 120 bits (132), Expect = 2e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 99691 AGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGT 99750 ||||| ||||| || | ||| |||||||| || | |||||||| | || | | Sbjct 826 AGGTGCGGGATGCCCTCGTAGATCGTGAGCTCCACGCGCTTGGGGTCCACCAGCACCATG 767 Query 99751 TTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTG 99810 |||| || ||||| || || ||| | ||| | ||| ||||| | |||||| Sbjct 766 CGGACCTCGTCGGGGGTGGCGCGCATGAGGATCGAGGTGATCATCGAGTTCACGAAGCTC 707 Query 99811 GACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGG 99870 ||||||||||| |||||||| || || || ||||| || |||||||| || |||||| | Sbjct 706 GACTTGCCCGAGCCGGTCGCCCCGGCGACGAGCAGGTGGGGCATCTTCGCGAGGTTCGCG 647 Query 99871 GAGATGTCCTTGCCCTCGACGTCCTTGCCCACTGCCACGGTCAACGGATGGTCGTC 99926 || | |||||||||||||||||||| | ||||||| ||| |||| ||| Sbjct 646 ACGACGAAGCCGCCCTCGACGTCCTTGCCCAGCCCGACGGTCATCGGGTGGTGGTC 591 >seq81249 Length=1001 Score = 120 bits (132), Expect = 2e-22 Identities = 199/283 (70%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 80266 CCTCGGCGACTGCCGGGGCGTCTTAGCGAGTTTTCCTGACGCCAGTGTCGATGCAATTCT 80325 |||||||||||||| | |||| | || | || |||| ||| || | || | | Sbjct 283 CCTCGGCGACTGCCTCGACGTCCTCCGGAAGCTGCCCGACGGCAGCGTGCACGCCGTCGT 224 Query 80326 CACAGACCCGCCCTACGAACTGGGATTCATGGGCAAGAAGTGGGACGGCTCGGGCATCGC 80385 ||| || |||||||||| || | ||||||||| | ||||| ||| | || Sbjct 223 CACCGATCCGCCCTACGCCCTCGACTTCATGGGCCACGGCTGGGATCGCTACACCCCCGG 164 Query 80386 C---TTCGAC-----GT-CGAGATGTGGGA-GC--AATGCCTGCGGGTCCTCAAGCCCGG 80433 | ||| | || |||| ||||| || | ||||| || ||||||| ||||| Sbjct 163 CGAGTTCCAGCACTGGTGCGAGCAGTGGGCCGCCGAGTGCCTCCGCATCCTCAAACCCGG 104 Query 80434 TGGGCACCTGCTCGCCTTCGGCGGCTCCCGCACCTGGCACCGGCTGACCGTGGCCATCGA 80493 ||||| || |||||||||||||| | ||||||| ||||| || | | | ||||| Sbjct 103 CGGGCAGCTCCTCGCCTTCGGCGGTACTCGCACCTTCCACCGCCTCGCTGCCGGAATCGA 44 Query 80494 GGACGCCGGGTTTGAGATCCGCGACTCGATCGCCTGGCTGTAC 80536 ||||||||| || |||||||||||||||||||| ||||| ||| Sbjct 43 GGACGCCGGATTCGAGATCCGCGACTCGATCGCGTGGCTCTAC 1 >seq111358 Length=586 Score = 113 bits (124), Expect = 3e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 99218 CGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACTG 99277 ||||||| | ||| ||| | |||||||| || ||||| || ||| || |||| | Sbjct 205 CGATCTCGGCCTCGTTGACCCAGGCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCG 146 Query 99278 GCAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCA 99337 |||| || | |||||| ||| || | || | || || ||| ||| ||||||||||| Sbjct 145 GCAGGAACAGCCCGTCGCCCTGGCCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCA 86 Query 99338 CCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGA 99397 ||||||| |||||| ||||| |||||| | || || ||||||||| ||||| Sbjct 85 CCCGGCTGTCGGTGGAGGACGACACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGA 26 Query 99398 TGAGGCCCGTCACCACATCCACGGA 99422 | ||||| || ||||| || ||||| Sbjct 25 TCAGGCCGGTGACCACGTCGACGGA 1 >seq58751 Length=1734 Score = 107 bits (118), Expect = 1e-18 Identities = 221/322 (69%), Gaps = 10/322 (3%) Strand=Plus/Plus Query 99585 GCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCT-CTACGGTGAGCCACC 99643 ||| ||||| || | |||||| || || ||||| ||||||| || | | ||| Sbjct 1275 GCGAACGCCCACCGACGACATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC-CCATT 1333 Query 99644 GCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATAC 99703 ||||| |||||||| | | | || || || ||||| || ||||||||||| Sbjct 1334 TCAGCGCGCGCACCGCCTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGT 1393 Query 99704 CGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCA 99762 ||| |||| | | | ||||| ||| ||||||||||||||||| | | | | || Sbjct 1394 CGTCGTACATGCTCAACTCGA-GCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCG 1452 Query 99763 GGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGAT 99822 || ||| ||||||||||||||| | | ||| |||||| | ||||||||||| Sbjct 1453 GGCGTCAGCCGGTAGAGCAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAG 1512 Query 99823 CCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCC--- 99879 ||||| | ||| || ||||||| |||||||| || |||| || |||| || Sbjct 1513 CCGGTGGTGCCCGCAACCAGCAAGTGCGGCATGGGGGCGAGGT---CGGTGATGACCGGA 1569 Query 99880 TTGCCCTCGACGTCCTTGCCCA 99901 | ||| ||| || |||||||| Sbjct 1570 TCGCCGGCGATGTTCTTGCCCA 1591 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 99367 AACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGC 99426 ||||| | |||| |||| ||| |||||||| ||| || | || || || || ||| Sbjct 946 AACGAGATGCGCGTCGGCAGATTGGCCTTGATGACGCCGGTGATGACGTCGACCGACGGC 1005 Query 99427 CGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGC 99476 ||||||||||||| || ||| || ||||| ||||| |||||||| ||||| Sbjct 1006 CGCTGCGTCGCCATGATGAGGTGGATGCCCGCCGCGCGCGCCTTTTGCGC 1055 >seq93073 Length=808 Score = 98.7 bits (108), Expect = 7e-16 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 54359 TCCCCCGGATCACCCCGCACGACCTCCGGCACACCTGCGCCTCGCTGGCCATCTCCTCCG 54418 |||| | | |||| | |||||||||||| |||||| ||| || || ||| ||||| Sbjct 194 TCCCGCCGCTCACGCTGCACGACCTCCGACACACCGCCGCGAGCCTCGCGATCCGCTCCG 135 Query 54419 GCGCCAACGTCAAGGCGGTCCAGAACCTTCTGGGACACGCCACCGCGGTGATGACTTTGG 54478 |||| ||||| ||||| |||||| | | || ||||||||| |||| | |||||| | | Sbjct 134 GCGCGAACGTGAAGGCAGTCCAGCGCATGCTCGGACACGCCTCCGCAGCCATGACTCTCG 75 Query 54479 ACCTCTACGGGCATTTGCTTTCG--GACGATTTGGAC 54513 || |||||| || || |||| |||||| ||||| Sbjct 74 ACGTCTACGCCGATCTG--TTCGACGACGATCTGGAC 40 >seq101272 Length=699 Score = 86.0 bits (94), Expect = 4e-12 Identities = 213/322 (66%), Gaps = 6/322 (2%) Strand=Plus/Minus Query 101408 GTCGAGCAGGATCGGATCGACCTCCCCGGCCGGCACGAACTCCACGACGTCAATCACCTT 101467 ||||| | ||| ||| |||| || | || |||||||||||| ||||| || ||| | Sbjct 521 GTCGAACCGGACCGGGTCGATCTGCTCGCTCGGCACGAACTCGACGACCTCGATCTCGCG 462 Query 101468 GTTGTTTTCGCTGGGCAGCTCTGCCAAGTCCTCATCGGTCAGTAGGGCGGTTTGCCCGTC 101527 | | ||| |||||| | | ||| || ||| || | | |||| ||| | Sbjct 461 GCTCCGCTCGACGGGCAGGGCCTTGAGGTCGTCGCTGGTGAGGACGACGGTGGTGCCGCC 402 Query 101528 GACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCCCCACACGTCTCACAGAC 101587 ||||| || ||||| | | ||||| || |||| || ||| ||| ||| || Sbjct 401 CTCCTCGTACGCCTTGTCGATGTCGGCGTAGTCGACCGTCTTCCCGCACACCTCGCA--- 345 Query 101588 CTTGTG---GTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTC 101644 |||| | |||||| || |||||||||||| | ||||| || | || ||| ||| Sbjct 344 CTTGCGCTCGTAGCGGATGCGCCCGCCGTCCGCGCCGTGCACCTGGTGCAGGCTCACGTC 285 Query 101645 ATGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAACCCAAAGTTGACCGC 101704 || |||| ||||| ||| | | ||||| ||||| |||| || || ||| ||| Sbjct 284 GTGGTCCTGCGTGGCGCTGTAGAGCCGGACCGGGACGTTCACCAGGCCGAACGTGATCGC 225 Query 101705 GCCTGTCCAAACTGCTCGCATG 101726 || ||||| | |||| |||| Sbjct 224 CCCGGTCCAGATCGCTCTCATG 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354065799753954