Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq10846 113 4e-20
seq16751 104 2e-17
seq1750 95.1 1e-14
seq50277 91.5 1e-13
seq13269 89.7 4e-13
seq3441 89.7 4e-13
>seq10846
Length=19378
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||||||||| | | ||||| ||||| || |||||||||||||| |||||||| |
Sbjct 11274 TTCCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAATCAG 11333
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | ||| | | || |||| ||| || || ||| |||| || ||||| || ||| |
Sbjct 11334 CTAAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTG 11393
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||||||||||| || || ||| || | | | |||||| |||
Sbjct 11394 GGATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATCAGAGCTCTCAA 11453
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| | ||||||||||| || || || || || |||||||||||||||
Sbjct 11454 CCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAAAATTTGCATT 11503
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897
||||| |||||||||||||| ||||||||||| |||| || | | || || |||||
Sbjct 10843 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 10902
Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957
||| || ||| ||||||| ||||||||||| || | ||||| ||||| ||| ||
Sbjct 10903 TTTGCCTGCAAAAATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATCTT 10962
Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
||| || | | | ||||| | || || | ||| ||||| ||||| ||
Sbjct 10963 TGCTTTCACATTATCAATTGTATCAGAACTTTCAACCTCCAAGGTTATGGTCTTACCAGT 11022
Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042
|| || || || ||||| ||||||
Sbjct 11023 CAAGGTCTTAACGAAAATCTGCATT 11047
>seq16751
Length=10463
Score = 104 bits (114), Expect = 2e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897
||||| |||||||||||||| ||||||||||| |||| || | | || || |||||
Sbjct 5860 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 5919
Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957
||| || ||| ||||||| |||||||| || ||| | ||||| ||||| ||| ||
Sbjct 5920 TTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 5979
Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
|||||| | | | ||||| | ||| || | |||||||| || |||||
Sbjct 5980 TGCTTTTACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGT 6039
Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042
|| || || || ||||| ||||||
Sbjct 6040 CAAGGTCTTAACGAAAATCTGCATT 6064
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| || ||||| | | ||||| ||||| || ||||||||||||||||||||||| |
Sbjct 6291 TTCCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCGG 6350
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | || | | || |||| ||| || || ||| |||| || ||||| || || |
Sbjct 6351 CTAAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGTG 6410
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||||| ||||| || || ||| || | ||| |||||| | |||
Sbjct 6411 GGATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAA 6470
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| | ||||| ||||| || || || || || |||||||||||||||
Sbjct 6471 CCTCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCATT 6520
>seq1750
Length=74028
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||||||||| ||||| || ||||| |||| ||| | | ||||| || || || ||
Sbjct 61978 GTAGACTCCTTCTGAATGTTATAATCGGCCAGAGTTCGGCCATCCTCAAGTTGCTTTCCA 61919
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| |||| | ||||||||||| ||| | ||| |||||||| ||||||| ||
Sbjct 61918 GCAAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGAATTTTCGCCTTC 61859
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | |||||| | ||| ||| | |||||||| || || || | ||
Sbjct 61858 ACATTATCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTTCCCAGTGAGTGTC 61799
Query 19025 TTGACAAAAATTTGCAT 19041
||||| ||||| |||||
Sbjct 61798 TTGACGAAAATCTGCAT 61782
>seq50277
Length=901
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897
||||| |||||||||||||| ||||||||||| |||| || | | || || |||||
Sbjct 709 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 768
Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957
||| || ||| ||||||| |||||||| || ||| | ||||| ||||| ||| ||
Sbjct 769 TTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 828
Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
|||||| | | | ||||| | ||| || | |||||||| || |||||
Sbjct 829 TGCTTTTACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGT 888
Query 19018 TAAAGTTTTGACA 19030
|| || || |||
Sbjct 889 CAAGGTCTTAACA 901
>seq13269
Length=14915
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||| ||||| ||||| |||||||| |||| ||| | | ||||| ||||| || ||
Sbjct 13634 GTAGATTCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCA 13575
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| |||| || ||||||||||| ||| | || |||||||| |||||| ||
Sbjct 13574 GCGAAAATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATTTTAGCCTTC 13515
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | ||||| | ||| ||| | |||||||| || || || | ||
Sbjct 13514 ACATTATCTATTGTATCAGAACTCTCAACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTC 13455
Query 19025 TTGACAAAAATTTGCAT 19041
||||||||||| |||||
Sbjct 13454 TTGACAAAAATCTGCAT 13438
>seq3441
Length=50379
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||| || || ||||| || | || | ||||||| ||| |||||
Sbjct 13949 GTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCGCCCATCCTCCAACTGCTTACCA 14008
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| |||| || |||||||| || || | |||||||||||| ||| || ||||
Sbjct 14009 GCAAAAATCAGCCTCTGCTGGTCGGGTGGAATGCCCTCTTTGTCCTGAATCTTAGCTTTT 14068
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | | ||||| | ||| || | || ||||||||||| || || ||
Sbjct 14069 ACGTTGTCAATGGTATCAGAACTTTCCACCTCCAGAGTTATGGTTTTACCAGTCAATGTC 14128
Query 19025 TTGACAAAAATTTGCAT 19041
|| |||||||| |||||
Sbjct 14129 TTCACAAAAATCTGCAT 14145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413897827417066
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |