Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq10846 113 4e-20 seq16751 104 2e-17 seq1750 95.1 1e-14 seq50277 91.5 1e-13 seq13269 89.7 4e-13 seq3441 89.7 4e-13 >seq10846 Length=19378 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||||||| | | ||||| ||||| || |||||||||||||| |||||||| | Sbjct 11274 TTCCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAATCAG 11333 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | || |||| ||| || || ||| |||| || ||||| || ||| | Sbjct 11334 CTAAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTG 11393 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| || || ||| || | | | |||||| ||| Sbjct 11394 GGATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATCAGAGCTCTCAA 11453 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||||||||| || || || || || ||||||||||||||| Sbjct 11454 CCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAAAATTTGCATT 11503 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| |||||||||||||| ||||||||||| |||| || | | || || ||||| Sbjct 10843 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 10902 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| || ||| ||||||| ||||||||||| || | ||||| ||||| ||| || Sbjct 10903 TTTGCCTGCAAAAATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATCTT 10962 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | ||||| | || || | ||| ||||| ||||| || Sbjct 10963 TGCTTTCACATTATCAATTGTATCAGAACTTTCAACCTCCAAGGTTATGGTCTTACCAGT 11022 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 || || || || ||||| |||||| Sbjct 11023 CAAGGTCTTAACGAAAATCTGCATT 11047 >seq16751 Length=10463 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| |||||||||||||| ||||||||||| |||| || | | || || ||||| Sbjct 5860 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 5919 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| || ||| ||||||| |||||||| || ||| | ||||| ||||| ||| || Sbjct 5920 TTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 5979 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 |||||| | | | ||||| | ||| || | |||||||| || ||||| Sbjct 5980 TGCTTTTACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGT 6039 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 || || || || ||||| |||||| Sbjct 6040 CAAGGTCTTAACGAAAATCTGCATT 6064 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || ||||| | | ||||| ||||| || ||||||||||||||||||||||| | Sbjct 6291 TTCCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCGG 6350 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | || |||| ||| || || ||| |||| || ||||| || || | Sbjct 6351 CTAAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGTG 6410 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| || || ||| || | ||| |||||| | ||| Sbjct 6411 GGATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAA 6470 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||| ||||| || || || || || ||||||||||||||| Sbjct 6471 CCTCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCATT 6520 >seq1750 Length=74028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| ||||| || ||||| |||| ||| | | ||||| || || || || Sbjct 61978 GTAGACTCCTTCTGAATGTTATAATCGGCCAGAGTTCGGCCATCCTCAAGTTGCTTTCCA 61919 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | ||||||||||| ||| | ||| |||||||| ||||||| || Sbjct 61918 GCAAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGAATTTTCGCCTTC 61859 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| | ||| ||| | |||||||| || || || | || Sbjct 61858 ACATTATCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTTCCCAGTGAGTGTC 61799 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 61798 TTGACGAAAATCTGCAT 61782 >seq50277 Length=901 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| |||||||||||||| ||||||||||| |||| || | | || || ||||| Sbjct 709 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 768 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| || ||| ||||||| |||||||| || ||| | ||||| ||||| ||| || Sbjct 769 TTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 828 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 |||||| | | | ||||| | ||| || | |||||||| || ||||| Sbjct 829 TGCTTTTACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGT 888 Query 19018 TAAAGTTTTGACA 19030 || || || ||| Sbjct 889 CAAGGTCTTAACA 901 >seq13269 Length=14915 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||| ||||| |||||||| |||| ||| | | ||||| ||||| || || Sbjct 13634 GTAGATTCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCA 13575 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| || ||||||||||| ||| | || |||||||| |||||| || Sbjct 13574 GCGAAAATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATTTTAGCCTTC 13515 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| | ||| ||| | |||||||| || || || | || Sbjct 13514 ACATTATCTATTGTATCAGAACTCTCAACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTC 13455 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||| ||||| Sbjct 13454 TTGACAAAAATCTGCAT 13438 >seq3441 Length=50379 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || || ||||| || | || | ||||||| ||| ||||| Sbjct 13949 GTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCGCCCATCCTCCAACTGCTTACCA 14008 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || |||||||| || || | |||||||||||| ||| || |||| Sbjct 14009 GCAAAAATCAGCCTCTGCTGGTCGGGTGGAATGCCCTCTTTGTCCTGAATCTTAGCTTTT 14068 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| | ||| || | || ||||||||||| || || || Sbjct 14069 ACGTTGTCAATGGTATCAGAACTTTCCACCTCCAGAGTTATGGTTTTACCAGTCAATGTC 14128 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 14129 TTCACAAAAATCTGCAT 14145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413897827417066