Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq89412 125 3e-24 >seq89412 Length=862 Score = 125 bits (138), Expect = 3e-24 Identities = 438/676 (65%), Gaps = 31/676 (5%) Strand=Plus/Plus Query 52826 GAGATACAGCGCGTATACGATGAAAATCACAAGGTATACGGTGTGCGTAAAGTCTGGCGT 52885 ||||| | |||||| | ||| | || | | || ||||| ||||| || || ||||| Sbjct 81 GAGATCCGGCGCGTGTTCGAGGCGAACTTCCATGTCTACGGCGTGCGCAAGGTTTGGCGG 140 Query 52886 CAGTTGTTACGGGAAGGTATCAGAGTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTT 52945 ||| | |||||||| ||| |||| | || || || ||||| || ||| | Sbjct 141 CAGCTCGCGCGGGAAGGGATCGTGACGGCCCGTTGTACGGTCGCACGCCTGATGCGGCGC 200 Query 52946 ATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGACCATC----AGCCGGAA 53001 ||||| || || || | ||||| | |||||| || || |||||| | |||| Sbjct 201 ATGGGGCTGAAAGGGGTGGTGCGGGGCAGAAAGGTTCGCACCACCATCCCTGACCCGGCT 260 Query 53002 AGCCG-TTGCC-GCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAG 53059 |||| ||||| || || ||||||| ||||| |||||| |||| || || | Sbjct 261 -GCCGCTTGCCCGCTGG--ACCGCGTCAACCGCCAGTTCAGGGCACCGCGGCCAAATGCC 317 Query 53060 CTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTC 53119 ||||||| || || || ||||| || ||| ||||||||||| ||||| ||| Sbjct 318 TTGTGGGTCAGCGACTTCACCTACGTGGCGACCTGGTCAGGCTTCGTCTACGTGGCATTC 377 Query 53120 ATCATTGATGTGTTTGCCGGATACATTGTGGGGTGGCGGGTCTCATCGTCCATGGAGACG 53179 |||| || | |||||| | ||| || || ||||| || ||| | | | || Sbjct 378 GTCATCGACGCCTTTGCCCGGCGCATCGTCGGTTGGCGCGTGTCACGGGCTGCCCACGCG 437 Query 53180 ACATTCGTGCTGGATGCACTGGAGCAGGCGTT--ATGGGC-CCGTCGACCGTCCGGCACG 53236 | ||||||||||| || ||||||||||| | | || ||||| ||||||| ||| Sbjct 438 AGCTTCGTGCTGGACGCCCTGGAGCAGGCCCTGCACCAGCGCCGTC--CCGTCCGAAACG 495 Query 53237 --------GTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGC 53288 || || ||| || | || || ||||| | ||||| |||||| ||| Sbjct 496 ACGGGCTCGTGCACCACTCGGACAGGGGGTCGCAGTACCTTGCGCTGCGCTACACCGAGC 555 Query 53289 GGCTTAAGGAAGCCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACG 53348 | || || || || | | | | || || || ||||| || || || |||| Sbjct 556 GCCTCGTCGAGGCGGGCGTCCAGCCCTCGGTCGGCAGCGTCGGCGATTCCTACGATAACG 615 Query 53349 CGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAATACACCGTAAGAGC---- 53404 | | || ||||||||||| || || | ||| || ||||| || ||||| | || Sbjct 616 CCCTCGCTGAGAGCATCAACGGCCTGTTCAAGGCCGAGGTGATCCACCG---GCGCGGTC 672 Query 53405 --TGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACA 53462 ||| | | | | ||||| | ||||| || ||||||||||||| |||| Sbjct 673 CGTGGCGGAGCTTCGAGGCCGTGGAGTTCGCCACCCTGGAATGGGTGGACTGGTTCAACA 732 Query 53463 ATCGACGATTGCTGGA 53478 | ||||| ||||||| Sbjct 733 ACCGACGCCTGCTGGA 748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184960518093256