Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_004813.1
Length=57930
Score E
Sequences producing significant alignments: (Bits) Value
seq89412 125 3e-24
>seq89412
Length=862
Score = 125 bits (138), Expect = 3e-24
Identities = 438/676 (65%), Gaps = 31/676 (5%)
Strand=Plus/Plus
Query 52826 GAGATACAGCGCGTATACGATGAAAATCACAAGGTATACGGTGTGCGTAAAGTCTGGCGT 52885
||||| | |||||| | ||| | || | | || ||||| ||||| || || |||||
Sbjct 81 GAGATCCGGCGCGTGTTCGAGGCGAACTTCCATGTCTACGGCGTGCGCAAGGTTTGGCGG 140
Query 52886 CAGTTGTTACGGGAAGGTATCAGAGTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTT 52945
||| | |||||||| ||| |||| | || || || ||||| || ||| |
Sbjct 141 CAGCTCGCGCGGGAAGGGATCGTGACGGCCCGTTGTACGGTCGCACGCCTGATGCGGCGC 200
Query 52946 ATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGACCATC----AGCCGGAA 53001
||||| || || || | ||||| | |||||| || || |||||| | ||||
Sbjct 201 ATGGGGCTGAAAGGGGTGGTGCGGGGCAGAAAGGTTCGCACCACCATCCCTGACCCGGCT 260
Query 53002 AGCCG-TTGCC-GCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAG 53059
|||| ||||| || || ||||||| ||||| |||||| |||| || || |
Sbjct 261 -GCCGCTTGCCCGCTGG--ACCGCGTCAACCGCCAGTTCAGGGCACCGCGGCCAAATGCC 317
Query 53060 CTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTC 53119
||||||| || || || ||||| || ||| ||||||||||| ||||| |||
Sbjct 318 TTGTGGGTCAGCGACTTCACCTACGTGGCGACCTGGTCAGGCTTCGTCTACGTGGCATTC 377
Query 53120 ATCATTGATGTGTTTGCCGGATACATTGTGGGGTGGCGGGTCTCATCGTCCATGGAGACG 53179
|||| || | |||||| | ||| || || ||||| || ||| | | | ||
Sbjct 378 GTCATCGACGCCTTTGCCCGGCGCATCGTCGGTTGGCGCGTGTCACGGGCTGCCCACGCG 437
Query 53180 ACATTCGTGCTGGATGCACTGGAGCAGGCGTT--ATGGGC-CCGTCGACCGTCCGGCACG 53236
| ||||||||||| || ||||||||||| | | || ||||| ||||||| |||
Sbjct 438 AGCTTCGTGCTGGACGCCCTGGAGCAGGCCCTGCACCAGCGCCGTC--CCGTCCGAAACG 495
Query 53237 --------GTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGC 53288
|| || ||| || | || || ||||| | ||||| |||||| |||
Sbjct 496 ACGGGCTCGTGCACCACTCGGACAGGGGGTCGCAGTACCTTGCGCTGCGCTACACCGAGC 555
Query 53289 GGCTTAAGGAAGCCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACG 53348
| || || || || | | | | || || || ||||| || || || ||||
Sbjct 556 GCCTCGTCGAGGCGGGCGTCCAGCCCTCGGTCGGCAGCGTCGGCGATTCCTACGATAACG 615
Query 53349 CGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAATACACCGTAAGAGC---- 53404
| | || ||||||||||| || || | ||| || ||||| || ||||| | ||
Sbjct 616 CCCTCGCTGAGAGCATCAACGGCCTGTTCAAGGCCGAGGTGATCCACCG---GCGCGGTC 672
Query 53405 --TGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACA 53462
||| | | | | ||||| | ||||| || ||||||||||||| ||||
Sbjct 673 CGTGGCGGAGCTTCGAGGCCGTGGAGTTCGCCACCCTGGAATGGGTGGACTGGTTCAACA 732
Query 53463 ATCGACGATTGCTGGA 53478
| ||||| |||||||
Sbjct 733 ACCGACGCCTGCTGGA 748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 184960518093256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |