Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1750 84.2 1e-11 seq10846 82.4 5e-11 >seq1750 Length=74028 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || |||||||| ||||| ||||| |||| ||| | | || || Sbjct 62218 ACCAAATGCAAGGTGGACTCTTTCTGTATGTTGTAGTCAGCCAATGTTCGACCATCCTCA 62159 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||||||| ||| || | | ||||| || | || || ||||| || || Sbjct 62158 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGT 62099 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || | ||| || | | ||| ||||| | || ||| |||| ||| || || ||| Sbjct 62098 ATTTTCGCTTTGACATTGTCAATTGTGTCAGAGCTTTCAACTTCCAAAGTGATTGTCTTT 62039 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||||||||| || || || ||||| Sbjct 62038 CCTGTAAGAGTTTTAACAAATATCTGCAT 62010 >seq10846 Length=19378 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || |||| || |||| |||||| |||| |||||||| ||||| || || Sbjct 11266 AATCTGCATTCCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTT 11325 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 |||||||| || | | || ||||| ||||| ||| ||| || | | || || Sbjct 11326 GTAATCAGCTAAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTG 11385 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 ||||| || || || ||||| || ||| ||| || | | ||| || || Sbjct 11386 GTCCGGTGGGATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATCAGA 11445 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | ||| |||| ||| || |||||||| || | || || || ||||||||||| Sbjct 11446 GCTCTCAACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAAAATTTGCAT 11502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318258593108922