Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3441 98.7 7e-16 seq16751 95.1 9e-15 seq124414 86.0 4e-12 seq10846 86.0 4e-12 >seq3441 Length=50379 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 |||||| || || || || ||||| ||||||||||| | | || ||| |||| | Sbjct 14164 CACCAAGTGAAGTGTCGATTCCTTTTGGATATTATAATCAGCAAGAGTG-CGCCCATCTT 14222 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 ||| || || || |||||||||| || ||||||||| |||| | || ||||| ||| Sbjct 14223 CCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCCGGAGGGATCCCCTCTTTGTCTT 14282 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 || ||| ||||| || ||| |||||| | || || || | || || |||| Sbjct 14283 GTATCTTTGCCTTGACATTATCAATAGTATCAGAACTTTCAACTTCCAATGTTATAGTTT 14342 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || ||||||||||| |||||||| Sbjct 14343 TTCCAGTCAAGGTCTTCACAAAAATTTGCAT 14373 >seq16751 Length=10463 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || || ||| ||||||||||| |||||| ||| | |||| || Sbjct 6310 CACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCGGCTAAGGTCCTTCCATCTTC 6369 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || || || ||||| |||| || || ||||| | || | ||| || || ||| Sbjct 6370 CAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCTTG 6429 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || ||| || || | | |||||||| ||| || || | ||||||||||| Sbjct 6430 GATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTTTT 6489 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| ||||| |||||||| Sbjct 6490 GCCAGTCAAGGTCTTAACAAAAATTTGCAT 6519 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| || || ||| || ||||| ||||| || ||| | | || |||| || Sbjct 6766 CACCAGGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCGGCAAGTGTGCGACCATCTTC 6825 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| || ||||| ||||||| |||||||| | || | ||| || || ||| Sbjct 6826 AAGTTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTG 6885 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| |||||| || ||| || || | ||| || || | ||||| ||||| Sbjct 6886 AATTTTGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATGGTTTT 6945 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||||||||| |||||||| Sbjct 6946 TCCAGTCAAGGTCTTCACAAAAATTTGCAT 6975 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | || | ||||| || || ||| || ||||| ||||| || ||| | Sbjct 6521 CCACCTCTAAGTCGGAGCACCAGGTGGAGGGTGGATTCCTTTTGGATATTGTAGTCGGCT 6580 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || |||| || | || || || ||||| ||||||| |||||||| | || Sbjct 6581 AGGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 6640 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || || ||| |||||| |||||| || | | || || | ||| || Sbjct 6641 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTATCGATGGTGTCGGAGCTCTCAACT 6700 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || || ||||||||||| |||||||| Sbjct 6701 TCCAAAGTAATGGTTTTACCAGTCAAGGTCTTCACAAAAATTTGCAT 6747 >seq124414 Length=715 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGT 43970 ||||||||| || ||| ||| || || || ||||| || | || | ||| |||| | Sbjct 77 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTC-TGCAAGAGTACGACCATCTT 135 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | || || |||||||| ||||||| || ||||| | || | ||| || || || Sbjct 136 CGAGCTGCTTGCCTGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCCT 195 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 || ||| ||||| | ||| ||||| | ||||| || | || ||||||| Sbjct 196 GGATCTTTGCCTTGACATTGTCAATGGTATCCGAGCTTTCCACCTCCAATGTTATTGTTT 255 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || |||||||| ||||| |||||||| Sbjct 256 TACCTGTCAAAGTCTTAACAAAAATTTGCAT 286 >seq10846 Length=19378 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| || || ||| || ||||| |||||||| ||| | || |||| || Sbjct 11521 CACCAGGTGGAGGGTGGATTCCTTTTGGATATTATAGTCGGCAAGGGTGCGACCATCTTC 11580 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || || ||||| ||||||| ||||| ||| | || | ||| || || ||| Sbjct 11581 AAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTG 11640 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| |||||| || ||| || || | ||| || || | ||||| ||||| Sbjct 11641 AATTTTGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATGGTTTT 11700 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||||||||| |||||||| Sbjct 11701 TCCAGTCAAGGTCTTCACAAAAATTTGCAT 11730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354199980935172