Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq3441 98.7 7e-16
seq16751 95.1 9e-15
seq124414 86.0 4e-12
seq10846 86.0 4e-12
>seq3441
Length=50379
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970
|||||| || || || || ||||| ||||||||||| | | || ||| |||| |
Sbjct 14164 CACCAAGTGAAGTGTCGATTCCTTTTGGATATTATAATCAGCAAGAGTG-CGCCCATCTT 14222
Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030
||| || || || |||||||||| || ||||||||| |||| | || ||||| |||
Sbjct 14223 CCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCCGGAGGGATCCCCTCTTTGTCTT 14282
Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090
|| ||| ||||| || ||| |||||| | || || || | || || ||||
Sbjct 14283 GTATCTTTGCCTTGACATTATCAATAGTATCAGAACTTTCAACTTCCAATGTTATAGTTT 14342
Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| || || || ||||||||||| ||||||||
Sbjct 14343 TTCCAGTCAAGGTCTTCACAAAAATTTGCAT 14373
>seq16751
Length=10463
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
|||||| || || || ||| ||||||||||| |||||| ||| | |||| ||
Sbjct 6310 CACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCGGCTAAGGTCCTTCCATCTTC 6369
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
||| || || || ||||| |||| || || ||||| | || | ||| || || |||
Sbjct 6370 CAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCTTG 6429
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
|| || ||| || || | | |||||||| ||| || || | |||||||||||
Sbjct 6430 GATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTTTT 6489
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || ||||| ||||| ||||||||
Sbjct 6490 GCCAGTCAAGGTCTTAACAAAAATTTGCAT 6519
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
||||| || || ||| || ||||| ||||| || ||| | | || |||| ||
Sbjct 6766 CACCAGGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCGGCAAGTGTGCGACCATCTTC 6825
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
| |||||| || ||||| ||||||| |||||||| | || | ||| || || |||
Sbjct 6826 AAGTTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTG 6885
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
|||||| |||||| || ||| || || | ||| || || | ||||| |||||
Sbjct 6886 AATTTTGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATGGTTTT 6945
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || ||||||||||| ||||||||
Sbjct 6946 TCCAGTCAAGGTCTTCACAAAAATTTGCAT 6975
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
|| ||||| | || | ||||| || || ||| || ||||| ||||| || ||| |
Sbjct 6521 CCACCTCTAAGTCGGAGCACCAGGTGGAGGGTGGATTCCTTTTGGATATTGTAGTCGGCT 6580
Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014
| || |||| || | || || || ||||| ||||||| |||||||| | ||
Sbjct 6581 AGGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 6640
Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074
| ||| || || ||| |||||| |||||| || | | || || | ||| ||
Sbjct 6641 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTATCGATGGTGTCGGAGCTCTCAACT 6700
Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | ||||| |||||||| || || ||||||||||| ||||||||
Sbjct 6701 TCCAAAGTAATGGTTTTACCAGTCAAGGTCTTCACAAAAATTTGCAT 6747
>seq124414
Length=715
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGT 43970
||||||||| || ||| ||| || || || ||||| || | || | ||| |||| |
Sbjct 77 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTC-TGCAAGAGTACGACCATCTT 135
Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030
| | || || |||||||| ||||||| || ||||| | || | ||| || || ||
Sbjct 136 CGAGCTGCTTGCCTGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCCT 195
Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090
|| ||| ||||| | ||| ||||| | ||||| || | || |||||||
Sbjct 196 GGATCTTTGCCTTGACATTGTCAATGGTATCCGAGCTTTCCACCTCCAATGTTATTGTTT 255
Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|||| || |||||||| ||||| ||||||||
Sbjct 256 TACCTGTCAAAGTCTTAACAAAAATTTGCAT 286
>seq10846
Length=19378
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
||||| || || ||| || ||||| |||||||| ||| | || |||| ||
Sbjct 11521 CACCAGGTGGAGGGTGGATTCCTTTTGGATATTATAGTCGGCAAGGGTGCGACCATCTTC 11580
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
| || || || ||||| ||||||| ||||| ||| | || | ||| || || |||
Sbjct 11581 AAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTG 11640
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
|||||| |||||| || ||| || || | ||| || || | ||||| |||||
Sbjct 11641 AATTTTGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATGGTTTT 11700
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || ||||||||||| ||||||||
Sbjct 11701 TCCAGTCAAGGTCTTCACAAAAATTTGCAT 11730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354199980935172
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |