Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq10846 116 3e-21
seq9176 102 7e-17
seq124414 95.1 1e-14
seq12926 91.5 1e-13
seq3622 89.7 4e-13
seq3441 86.0 5e-12
seq16751 84.2 2e-11
seq1750 82.4 6e-11
>seq10846
Length=19378
Score = 116 bits (128), Expect = 3e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||||||||| || | || |||||| || || || || || ||||| |||||||||||
Sbjct 11274 TTCCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAATCAG 11333
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| | ||| | ||||||||| || ||||| ||| |||| ||||||||||| || |
Sbjct 11334 CTAAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTG 11393
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCC 20158
| | || |||||||| || || ||| || | ||| || ||| || | ||
Sbjct 11394 GGATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATC-AGAGCTCTCA 11452
Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|||| ||||||||||| || ||||| || || |||||||||||||||
Sbjct 11453 ACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAAAATTTGCATT 11503
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || ||||| || ||||| || |||||||| ||| ||| | |||||| | |||
Sbjct 10844 TGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGT 10903
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
||||| ||| ||||||||||||| ||||| || | || || ||||| ||| |||
Sbjct 10904 TTGCCTGCAAAAATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATCTTT 10963
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
|||||| | ||| | ||| | ||| |||| ||| ||||| || || |||
Sbjct 10964 GCTTTCACATTATCAATTGTATCAGAACTTTCAACCTCCAAGGTTATGGTCTTACCAGTC 11023
Query 20186 AACGTTTTGACAAAAATTTGCATT 20209
|| || || || ||||| ||||||
Sbjct 11024 AAGGTCTTAACGAAAATCTGCATT 11047
>seq9176
Length=23001
Score = 102 bits (112), Expect = 7e-17
Identities = 111/146 (76%), Gaps = 1/146 (1%)
Strand=Plus/Minus
Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029
|| ||||| ||||||| || | ||||| |||| || ||||| || || ||||| |||
Sbjct 20025 TTAATCATAGTTCCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTCGACTCCTTTTGGATG 19966
Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089
|||||||| | | |||| | |||||||||||| ||||| ||| |||| |||||||||
Sbjct 19965 TTGTAATCAGCAAGAGTTCGACCATCTTCCAATTGCTTGCCAGCAAAAATCAGCCTCTGT 19906
Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115
|| || ||| | ||||| |||||
Sbjct 19905 TGGTCTGGGGGGATACCTTCCTTGTC 19880
>seq124414
Length=715
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
|||||| || || ||||| ||||| || || ||||| ||| | | |||| | ||||||
Sbjct 305 CACCAAGTGGAGGGTAGACTCTTTCTGGATATTGTAGTCGGCAAGAGTTCGACCATCTTC 364
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
||||||||| || || |||| ||||| || ||||| || | ||||| |||||
Sbjct 365 CAATTGTTTACCAGCGAAAATGAGCCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 424
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
||||| |||||| | | ||| || |||| ||| || | ||| ||||| ||
Sbjct 425 GATTTTCGCTTTCACATTGTCAATAGTATCGGAGCTTTCAACCTCAAGGGTGATGGTCTT 484
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| || | ||||| ||||| || |||||
Sbjct 485 TCCAGTGAGAGTTTTCACAAAGATCTGCAT 514
>seq12926
Length=15191
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
||||| || | ||||||||||||||| || || ||||| || || ||||| |||||| |
Sbjct 297 CCTCCACGGAGCCTCAACACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCG 356
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101
| || | || ||||||||||| || || | || |||||||| || || |||
Sbjct 357 AGGGTGCGACCGTCCTCCAATTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 416
Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160
| |||||| ||||| || || || || | | | | | ||| || | |||
Sbjct 417 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCG-GAGCTCTCCAC 475
Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212
|||| ||| |||||||| ||||| | ||||| || || || ||||| |||
Sbjct 476 CTCCAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTTT 527
>seq3622
Length=48326
Score = 89.7 bits (98), Expect = 4e-13
Identities = 109/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029
|| ||||| ||||||| || | ||||| |||| || ||||| || || ||||| |||
Sbjct 46783 TTAATCATAGTTCCTCC-CGAAGTCTCAAAACCAGGTGAAGTGTTGACTCCTTTTGGATG 46841
Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089
|||||||| | | |||| | |||||||||||| || || ||| |||| |||||||||
Sbjct 46842 TTGTAATCAGCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGT 46901
Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115
|| || ||| | | ||| |||||
Sbjct 46902 TGGTCTGGGGGGATACTTTCCTTGTC 46927
>seq3441
Length=50379
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
|||||| || || || || ||||| || || ||||| ||| | | |||| | ||||||
Sbjct 14848 CACCAAGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCGGCAAGAGTTCGACCATCTTC 14907
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
||||||||| || || |||| ||||| || ||||| || | || || |||||
Sbjct 14908 CAATTGTTTACCAGCGAAAATGAGCCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCCTG 14967
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
||||| |||||| | | ||| || |||| ||| || | ||| ||||| ||
Sbjct 14968 GATTTTCGCTTTCACATTGTCAATAGTATCGGAGCTTTCAACCTCAAGGGTGATGGTCTT 15027
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| || | ||||| ||||| || |||||
Sbjct 15028 TCCAGTGAGAGTTTTCACAAAGATCTGCAT 15057
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
|||||| || ||||| ||||| ||||| || || ||||| | | ||| ||||||
Sbjct 14164 CACCAAGTGAAGTGTCGATTCCTTTTGGATATTATAATCAGCAAGAGTGCGCCCATCTTC 14223
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
|| || ||||| ||| | || |||||||| || || || | || ||||||||
Sbjct 14224 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCCGGAGGGATCCCCTCTTTGTCTTG 14283
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
|| ||| || || | ||| || ||| | ||| ||||| || || |||||
Sbjct 14284 TATCTTTGCCTTGACATTATCAATAGTATCAGAACTTTCAACTTCCAATGTTATAGTTTT 14343
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|| ||||| || || |||||||||||||||
Sbjct 14344 TCCAGTCAAGGTCTTCACAAAAATTTGCATT 14374
>seq16751
Length=10463
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || ||||| || ||||| || |||||||| ||| ||| | |||||| | |||
Sbjct 5861 TGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGT 5920
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
||||| ||| ||||||||||||| || || ||| | || || ||||| ||| |||
Sbjct 5921 TTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTTT 5980
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
||| || | ||| | ||| | || |||| |||||||| || || |||
Sbjct 5981 GCTTTTACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGTC 6040
Query 20186 AACGTTTTGACAAAAATTTGCATT 20209
|| || || || ||||| ||||||
Sbjct 6041 AAGGTCTTAACGAAAATCTGCATT 6064
>seq1750
Length=74028
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| |||||||| || || || ||||| |||||| ||| |||| ||| || | |||
Sbjct 61984 TGGAGTGTAGACTCCTTCTGAATGTTATAATCGGCCAGAGTTCGGCCATCCTCAAGTTGC 61925
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|| || ||| |||| | |||||| ||||| ||| | |||||||||||| ||||||
Sbjct 61924 TTTCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGAATTTTC 61865
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
||||| | | | | |||| | || ||| | |||||||| || || ||
Sbjct 61864 GCCTTCACATTATCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTTCCCAGTG 61805
Query 20186 AACGTTTTGACAAAAATTTGCAT 20208
| || ||||| ||||| |||||
Sbjct 61804 AGTGTCTTGACGAAAATCTGCAT 61782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418904063392509
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