Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq10846 116 3e-21 seq9176 102 7e-17 seq124414 95.1 1e-14 seq12926 91.5 1e-13 seq3622 89.7 4e-13 seq3441 86.0 5e-12 seq16751 84.2 2e-11 seq1750 82.4 6e-11 >seq10846 Length=19378 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| || | || |||||| || || || || || ||||| ||||||||||| Sbjct 11274 TTCCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAATCAG 11333 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| | ||||||||| || ||||| ||| |||| ||||||||||| || | Sbjct 11334 CTAAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTG 11393 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCC 20158 | | || |||||||| || || ||| || | ||| || ||| || | || Sbjct 11394 GGATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATC-AGAGCTCTCA 11452 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||||||||| || ||||| || || ||||||||||||||| Sbjct 11453 ACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAAAATTTGCATT 11503 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| || ||||| || |||||||| ||| ||| | |||||| | ||| Sbjct 10844 TGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGT 10903 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| ||||||||||||| ||||| || | || || ||||| ||| ||| Sbjct 10904 TTGCCTGCAAAAATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATCTTT 10963 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | ||| | ||| | ||| |||| ||| ||||| || || ||| Sbjct 10964 GCTTTCACATTATCAATTGTATCAGAACTTTCAACCTCCAAGGTTATGGTCTTACCAGTC 11023 Query 20186 AACGTTTTGACAAAAATTTGCATT 20209 || || || || ||||| |||||| Sbjct 11024 AAGGTCTTAACGAAAATCTGCATT 11047 >seq9176 Length=23001 Score = 102 bits (112), Expect = 7e-17 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| || | ||||| |||| || ||||| || || ||||| ||| Sbjct 20025 TTAATCATAGTTCCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTCGACTCCTTTTGGATG 19966 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | |||| | |||||||||||| ||||| ||| |||| ||||||||| Sbjct 19965 TTGTAATCAGCAAGAGTTCGACCATCTTCCAATTGCTTGCCAGCAAAAATCAGCCTCTGT 19906 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || ||| | ||||| ||||| Sbjct 19905 TGGTCTGGGGGGATACCTTCCTTGTC 19880 >seq124414 Length=715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || ||||| ||||| || || ||||| ||| | | |||| | |||||| Sbjct 305 CACCAAGTGGAGGGTAGACTCTTTCTGGATATTGTAGTCGGCAAGAGTTCGACCATCTTC 364 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||||||||| || || |||| ||||| || ||||| || | ||||| ||||| Sbjct 365 CAATTGTTTACCAGCGAAAATGAGCCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 424 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||||| |||||| | | ||| || |||| ||| || | ||| ||||| || Sbjct 425 GATTTTCGCTTTCACATTGTCAATAGTATCGGAGCTTTCAACCTCAAGGGTGATGGTCTT 484 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||||| ||||| || ||||| Sbjct 485 TCCAGTGAGAGTTTTCACAAAGATCTGCAT 514 >seq12926 Length=15191 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | ||||||||||||||| || || ||||| || || ||||| |||||| | Sbjct 297 CCTCCACGGAGCCTCAACACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCG 356 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | || ||||||||||| || || | || |||||||| || || ||| Sbjct 357 AGGGTGCGACCGTCCTCCAATTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 416 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | |||||| ||||| || || || || | | | | | ||| || | ||| Sbjct 417 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCG-GAGCTCTCCAC 475 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 |||| ||| |||||||| ||||| | ||||| || || || ||||| ||| Sbjct 476 CTCCAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTTT 527 >seq3622 Length=48326 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| || | ||||| |||| || ||||| || || ||||| ||| Sbjct 46783 TTAATCATAGTTCCTCC-CGAAGTCTCAAAACCAGGTGAAGTGTTGACTCCTTTTGGATG 46841 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | |||| | |||||||||||| || || ||| |||| ||||||||| Sbjct 46842 TTGTAATCAGCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGT 46901 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || ||| | | ||| ||||| Sbjct 46902 TGGTCTGGGGGGATACTTTCCTTGTC 46927 >seq3441 Length=50379 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || || || ||||| || || ||||| ||| | | |||| | |||||| Sbjct 14848 CACCAAGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCGGCAAGAGTTCGACCATCTTC 14907 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||||||||| || || |||| ||||| || ||||| || | || || ||||| Sbjct 14908 CAATTGTTTACCAGCGAAAATGAGCCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCCTG 14967 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||||| |||||| | | ||| || |||| ||| || | ||| ||||| || Sbjct 14968 GATTTTCGCTTTCACATTGTCAATAGTATCGGAGCTTTCAACCTCAAGGGTGATGGTCTT 15027 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||||| ||||| || ||||| Sbjct 15028 TCCAGTGAGAGTTTTCACAAAGATCTGCAT 15057 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || ||||| ||||| ||||| || || ||||| | | ||| |||||| Sbjct 14164 CACCAAGTGAAGTGTCGATTCCTTTTGGATATTATAATCAGCAAGAGTGCGCCCATCTTC 14223 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || || ||||| ||| | || |||||||| || || || | || |||||||| Sbjct 14224 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCCGGAGGGATCCCCTCTTTGTCTTG 14283 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 || ||| || || | ||| || ||| | ||| ||||| || || ||||| Sbjct 14284 TATCTTTGCCTTGACATTATCAATAGTATCAGAACTTTCAACTTCCAATGTTATAGTTTT 14343 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || ||||| || || ||||||||||||||| Sbjct 14344 TCCAGTCAAGGTCTTCACAAAAATTTGCATT 14374 >seq16751 Length=10463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| || ||||| || |||||||| ||| ||| | |||||| | ||| Sbjct 5861 TGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGT 5920 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| ||||||||||||| || || ||| | || || ||||| ||| ||| Sbjct 5921 TTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTTT 5980 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||| || | ||| | ||| | || |||| |||||||| || || ||| Sbjct 5981 GCTTTTACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGTC 6040 Query 20186 AACGTTTTGACAAAAATTTGCATT 20209 || || || || ||||| |||||| Sbjct 6041 AAGGTCTTAACGAAAATCTGCATT 6064 >seq1750 Length=74028 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || |||||||| || || || ||||| |||||| ||| |||| ||| || | ||| Sbjct 61984 TGGAGTGTAGACTCCTTCTGAATGTTATAATCGGCCAGAGTTCGGCCATCCTCAAGTTGC 61925 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | |||||| ||||| ||| | |||||||||||| |||||| Sbjct 61924 TTTCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGAATTTTC 61865 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||||| | | | | |||| | || ||| | |||||||| || || || Sbjct 61864 GCCTTCACATTATCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTTCCCAGTG 61805 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | || ||||| ||||| ||||| Sbjct 61804 AGTGTCTTGACGAAAATCTGCAT 61782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418904063392509