Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq99200 116 3e-21
>seq99200
Length=725
Score = 116 bits (128), Expect = 3e-21
Identities = 290/438 (66%), Gaps = 2/438 (0%)
Strand=Plus/Plus
Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210
|| || ||||| ||||| |||||||| | | || |||||||| || ||||| |||
Sbjct 214 CAGGCGAAATCTGTGTGCATACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGA 273
Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270
|| ||||| || |||| || || | ||| || || | || || || || || || ||
Sbjct 274 CCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAG 333
Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCA-ACCTTTCACCATACGTACTATTTTTACTCTC 13329
|| || ||||| || || || || | || || || | | || | || | |||
Sbjct 334 ATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGGGCGAAAC-TGCTTTCCTTATCAGA 392
Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389
||||| | ||||| | || || | | ||| ||| | || || || |
Sbjct 393 GATCCATCTCAACGCCCACTCAGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATC 452
Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449
|| | || | ||| | ||| ||| | | | ||||| || | ||||| |||||
Sbjct 453 GAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAAATGTATCAATGAGCAAGCTGTACAT 512
Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509
||| || || ||||| |||||| || |||||||||||||| |||| |||||||| |||
Sbjct 513 TTCGGAGTGGATATTCTCCATCATGATCTGGAAACCATAAAAGCATCGAGCCTCTGGTAC 572
Query 13510 CTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569
|| || || | ||||| || | | ||| ||||| || || |||||| |||||
Sbjct 573 TTGCACCTCACCCGAGAATCTCTCGACAAGGTTCTCGTTGACAATACCGTCAGAGGCAGC 632
Query 13570 aaaaaaaGCAAGTATGTG 13587
|| |||||||| | |||
Sbjct 633 GAAGAAAGCAAGGACGTG 650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430280710685778
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |