Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq99200 116 3e-21 >seq99200 Length=725 Score = 116 bits (128), Expect = 3e-21 Identities = 290/438 (66%), Gaps = 2/438 (0%) Strand=Plus/Plus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || || ||||| ||||| |||||||| | | || |||||||| || ||||| ||| Sbjct 214 CAGGCGAAATCTGTGTGCATACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGA 273 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || ||||| || |||| || || | ||| || || | || || || || || || || Sbjct 274 CCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAG 333 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCA-ACCTTTCACCATACGTACTATTTTTACTCTC 13329 || || ||||| || || || || | || || || | | || | || | ||| Sbjct 334 ATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGGGCGAAAC-TGCTTTCCTTATCAGA 392 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 ||||| | ||||| | || || | | ||| ||| | || || || | Sbjct 393 GATCCATCTCAACGCCCACTCAGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATC 452 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449 || | || | ||| | ||| ||| | | | ||||| || | ||||| ||||| Sbjct 453 GAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAAATGTATCAATGAGCAAGCTGTACAT 512 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 ||| || || ||||| |||||| || |||||||||||||| |||| |||||||| ||| Sbjct 513 TTCGGAGTGGATATTCTCCATCATGATCTGGAAACCATAAAAGCATCGAGCCTCTGGTAC 572 Query 13510 CTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGC 13569 || || || | ||||| || | | ||| ||||| || || |||||| ||||| Sbjct 573 TTGCACCTCACCCGAGAATCTCTCGACAAGGTTCTCGTTGACAATACCGTCAGAGGCAGC 632 Query 13570 aaaaaaaGCAAGTATGTG 13587 || |||||||| | ||| Sbjct 633 GAAGAAAGCAAGGACGTG 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430280710685778