Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq35216 197 6e-46 >seq35216 Length=2640 Score = 197 bits (218), Expect = 6e-46 Identities = 840/1294 (65%), Gaps = 47/1294 (4%) Strand=Plus/Minus Query 54907 CGCGCCGACCGGCTCGTCAACTACTACAACGAGAACTTCAACAACATCGCGCCGCGCCAG 54966 || || |||||||| | | |||||| || |||||||||| | | |||||| Sbjct 1329 CGGGCGGACCGGCTGTCCCGCATCTACAATGACCGCTTCAACAACCTGGTGCCGCGGTCC 1270 Query 54967 TTCGACGGCTCGCACCTGACGCTGCCGGGCGTGTCGCTGCGCT-TCAACCTGCGCGAAAA 55025 |||||||| |||||| ||||||||||| ||| | ||| || | |||||| | Sbjct 1269 TTCGACGGGAGCCACCTGCAGCTGCCGGGCGCGTC-CAGCGTGATCCAGATGCGCGGCCA 1211 Query 55026 CCAGAAGCGCGCCATCTGGCGCGGCATTCAGGAAGGCGAC-ATGTACCTCGCGCACGCGG 55084 ||||||||| | |||||||| | ||| ||| | || || | ||| |||| ||||||| Sbjct 1210 CCAGAAGCGGGTGATCTGGCGGGTCAT-CAGCACGGGCACGACCTACATCGCCCACGCGG 1152 Query 55085 TCGGCGCGGGCAAGACGTTCACGATGATCGCGACGGGCATGGAGGAGCGCCGGCTGGGCC 55144 ||||||| || ||||| ||| | ||| |||| || ||||||| |||||||||| |||| Sbjct 1151 TCGGCGCCGGGAAGACCTTCTCCATGGCCGCGGCGATCATGGAGCAGCGCCGGCTCGGCC 1092 Query 55145 TCTCCAACAAGCCGATGTACGTGGTGCCGAACCACATGCTCGCGCAGTTCGCACGCGAAT 55204 | | |||| | ||| ||||||||| ||| || |||||| ||||| | Sbjct 1091 TGGTGACCAAGGCCATGATGGTGGTGCCG-GGCACTGCCTGGCGCAGGCGAGCCGCGAGT 1033 Query 55205 TCCTCGAGCTCTACCCGGCCGCGAACATCATGGTCGCGGACGAGCAGAATTTCCACACGC 55264 |||| |||||||||| ||| | ||| |||||||||||||| || ||| | Sbjct 1032 TCCTGCTGCTCTACCCGAACGCCCAGATCCTGGTCGCGGACGAGACCAACTTCGCCCGTG 973 Query 55265 ACAACCGCCGTCGCTTCGTCGCGCAGGCCGCGCTCAACAATCCGGA-TGCGGTCATCATC 55323 | || || | |||||| | || | |||||| || ||| ||| |||||||| Sbjct 972 AGAAGCGGCAGCGCTTCCTGGCCCGGGCCGCCACGGGCACCTGGGACTGC-ATCATCATC 914 Query 55324 ACGCACTCGGCGTTCGGCCGCAT--CGGCATGTCCGACGAGTACGCGGCGCAGTTCATCT 55381 || ||| || ||| ||| |||| | | || ||| || | | | | ||| Sbjct 913 ACCCACAGCGCCTTCAAGTTCATCCCGGCTCCTGC-AC-AGTTCGAGAAGGGGCTGATCG 856 Query 55382 CCGACCAGATCGACGAG-TGGAAAGCCGCGCTCGACGAGACGGACAAGAGCGACCGGATC 55440 || |||||| | ||| | | | ||| || | ||||| |||||| ||| Sbjct 855 ACGCGCAGATCCA-GAGCTACGTCGACCTGCTGGAGCGGGTGGACAGCGACGACCGCATC 797 Query 55441 ACGCGCAAGCAGATCGAGCGCCGCATCGNNNNNNNNNNNNNNNNNNNNNNNGCGAAACAG 55500 || ||||||| | | ||||| | | | ||| | Sbjct 796 ACCCGCAAGCGGCTGGAGCGGCTGAAGGAGCGCATGGAGGCCAAGCTGGAGGCG---CTC 740 Query 55501 GGCAGCGAGAAGAAGGACAAGGTGCTGTCGTTCGAGGAGCTGGGCGTCGACCGTCTGTTC 55560 | || | ||| | |||| ||||| | ||| ||| | |||||||||| ||| | Sbjct 739 GCCACCCGCAAGGACGACA---TGCTGACCATCGGCGAGATCGGCGTCGACCAGCTGGTG 683 Query 55561 GTCGACGAATTCCACGAGTTCCGCAAACTCGACTTCGCGACGCAGCA-GAGCAACATCAA 55619 || ||||| || |||||| | || || |||||| || || || | || | | || Sbjct 682 GTGGACGAGGCGCAGGAGTTCAGGAAGCTGAGCTTCGCCAC-CAACATGGCCAGCCTGAA 624 Query 55620 GGGCATCGACCCGGCCGGCTCGCAGCGCGCGATGGACCTGTTCATGAAGGTCCAATACCT 55679 || ||| ||||| ||| ||||||||||| |||||| | | ||| | ||| | Sbjct 623 AGGGATCAGCCCGGACGGTTCGCAGCGCGCCTGGGACCTCTACGCCAAGTCGCGCTACAT 564 Query 55680 -GCGCAGCAAGAAGCCGGGCCG---CGCGCTCGTGGCCGCGTCCGGCACGCCGGTCACGA 55735 |||||| | |||||| || | | || || ||||| ||||||||| |||| | Sbjct 563 CGCGCAG-ACCCAGCCGGCGCGGAACCTGATCCTG---GCGTCGGGCACGCCGATCACCA 508 Query 55736 ACACGATGGGCGAGCTCTACACCGCGCAACGCTTCTTCCAGCCCGAGCAGCTTGCAGAGG 55795 |||| ||||||||| | | || | ||| |||||| | ||||| || ||| | ||| Sbjct 507 ACACCATGGGCGAGATGTTCAGCCTGCAGCGCTTCATGCAGCCGGACGTGCTGGAGGAGC 448 Query 55796 ATGGTCTGGATACGTTCGACGCGTGGGC--CAACCAGTACGGCGACATCGTTGCGGGCTT 55853 || ||| | ||||||||| ||||| | ||| | |||||||| || ||| | Sbjct 447 GCGGCCTGCACGAGTTCGACGCCTGGGCCTCGACC--TTCGGCGACACGGTGACGGAACT 390 Query 55854 CGAGCAGAACGCCG-CCGGCGGCTACGAGGTCGTGAGCCGCTTCGCGAAGTTCCAGAACG 55912 |||| | | |||| ||||| |||| || |||| || |||||||| ||| |||| Sbjct 389 GGAGCTGCA-GCCGTCCGGCAACTACCAGCCGGTGACGCGGTTCGCGAACTTCGTCAACG 331 Query 55913 TGCCCGAGCTGATGCGCCGCG-TGCGCTCGTTCATGGACATCCTGA-CGAG-CCAACAGC 55969 || | || ||||| |||| | | |||||| || |||| | ||| | || || || | Sbjct 330 TGGCGGACCTGAT-CGCCATGTTCCGCTCGGTCGCGGACGTGGTGAGCAAGACCGAC--C 274 Query 55970 TCGCGCAG-TACGTCGACCGTCCGGCGATCGAGGGCGGCGGCCGTCAGATCATGGTC-AC 56027 | |||| | || | | | | |||| | | |||| || |||||| || | | Sbjct 273 T-GCGCGGTTATGCCAAGCTGCCGGAGGTTCGCACCGGCAAGCGGCAGATCCTGACCTCC 215 Query 56028 GCCGGAGCCGTTCGG-CTACAAGGCATACCAGAAGGCGCTCGAGCAGCGCATCACCGCGA 56086 ||| | | | ||| || |||||| || ||| || | |||| ||| | | Sbjct 214 GCC--ACCAGCCCGGCCTTCAAGGCTTATCAGCGCATCCTGGCCAAGCGGATCGACATCA 157 Query 56087 TCCGCAACCGCAAGGGCCCGCCGCAGAAGGGGCAGGACATCATCCTGAACGTGATCGCGG 56146 || | ||||||||| ||| ||||||||||||||||| | || ||| ||| | | Sbjct 156 TCAAGGAGCGCAAGGGCAAGCCCGAGAAGGGGCAGGACATCTTGCTCTCCGTCATCACCG 97 Query 56147 ACGGCCGTTTCTCGGCGATCGACATGCGTTTCGT 56180 ||||||| ||||||||||| |||| ||||| Sbjct 96 ACGGCCGGCATGCGGCGATCGACCTGCGGTTCGT 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203964979821447