Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_005262.3
Length=63882
Score E
Sequences producing significant alignments: (Bits) Value
seq35216 197 6e-46
>seq35216
Length=2640
Score = 197 bits (218), Expect = 6e-46
Identities = 840/1294 (65%), Gaps = 47/1294 (4%)
Strand=Plus/Minus
Query 54907 CGCGCCGACCGGCTCGTCAACTACTACAACGAGAACTTCAACAACATCGCGCCGCGCCAG 54966
|| || |||||||| | | |||||| || |||||||||| | | ||||||
Sbjct 1329 CGGGCGGACCGGCTGTCCCGCATCTACAATGACCGCTTCAACAACCTGGTGCCGCGGTCC 1270
Query 54967 TTCGACGGCTCGCACCTGACGCTGCCGGGCGTGTCGCTGCGCT-TCAACCTGCGCGAAAA 55025
|||||||| |||||| ||||||||||| ||| | ||| || | |||||| |
Sbjct 1269 TTCGACGGGAGCCACCTGCAGCTGCCGGGCGCGTC-CAGCGTGATCCAGATGCGCGGCCA 1211
Query 55026 CCAGAAGCGCGCCATCTGGCGCGGCATTCAGGAAGGCGAC-ATGTACCTCGCGCACGCGG 55084
||||||||| | |||||||| | ||| ||| | || || | ||| |||| |||||||
Sbjct 1210 CCAGAAGCGGGTGATCTGGCGGGTCAT-CAGCACGGGCACGACCTACATCGCCCACGCGG 1152
Query 55085 TCGGCGCGGGCAAGACGTTCACGATGATCGCGACGGGCATGGAGGAGCGCCGGCTGGGCC 55144
||||||| || ||||| ||| | ||| |||| || ||||||| |||||||||| ||||
Sbjct 1151 TCGGCGCCGGGAAGACCTTCTCCATGGCCGCGGCGATCATGGAGCAGCGCCGGCTCGGCC 1092
Query 55145 TCTCCAACAAGCCGATGTACGTGGTGCCGAACCACATGCTCGCGCAGTTCGCACGCGAAT 55204
| | |||| | ||| ||||||||| ||| || |||||| ||||| |
Sbjct 1091 TGGTGACCAAGGCCATGATGGTGGTGCCG-GGCACTGCCTGGCGCAGGCGAGCCGCGAGT 1033
Query 55205 TCCTCGAGCTCTACCCGGCCGCGAACATCATGGTCGCGGACGAGCAGAATTTCCACACGC 55264
|||| |||||||||| ||| | ||| |||||||||||||| || ||| |
Sbjct 1032 TCCTGCTGCTCTACCCGAACGCCCAGATCCTGGTCGCGGACGAGACCAACTTCGCCCGTG 973
Query 55265 ACAACCGCCGTCGCTTCGTCGCGCAGGCCGCGCTCAACAATCCGGA-TGCGGTCATCATC 55323
| || || | |||||| | || | |||||| || ||| ||| ||||||||
Sbjct 972 AGAAGCGGCAGCGCTTCCTGGCCCGGGCCGCCACGGGCACCTGGGACTGC-ATCATCATC 914
Query 55324 ACGCACTCGGCGTTCGGCCGCAT--CGGCATGTCCGACGAGTACGCGGCGCAGTTCATCT 55381
|| ||| || ||| ||| |||| | | || ||| || | | | | |||
Sbjct 913 ACCCACAGCGCCTTCAAGTTCATCCCGGCTCCTGC-AC-AGTTCGAGAAGGGGCTGATCG 856
Query 55382 CCGACCAGATCGACGAG-TGGAAAGCCGCGCTCGACGAGACGGACAAGAGCGACCGGATC 55440
|| |||||| | ||| | | | ||| || | ||||| |||||| |||
Sbjct 855 ACGCGCAGATCCA-GAGCTACGTCGACCTGCTGGAGCGGGTGGACAGCGACGACCGCATC 797
Query 55441 ACGCGCAAGCAGATCGAGCGCCGCATCGNNNNNNNNNNNNNNNNNNNNNNNGCGAAACAG 55500
|| ||||||| | | ||||| | | | ||| |
Sbjct 796 ACCCGCAAGCGGCTGGAGCGGCTGAAGGAGCGCATGGAGGCCAAGCTGGAGGCG---CTC 740
Query 55501 GGCAGCGAGAAGAAGGACAAGGTGCTGTCGTTCGAGGAGCTGGGCGTCGACCGTCTGTTC 55560
| || | ||| | |||| ||||| | ||| ||| | |||||||||| ||| |
Sbjct 739 GCCACCCGCAAGGACGACA---TGCTGACCATCGGCGAGATCGGCGTCGACCAGCTGGTG 683
Query 55561 GTCGACGAATTCCACGAGTTCCGCAAACTCGACTTCGCGACGCAGCA-GAGCAACATCAA 55619
|| ||||| || |||||| | || || |||||| || || || | || | | ||
Sbjct 682 GTGGACGAGGCGCAGGAGTTCAGGAAGCTGAGCTTCGCCAC-CAACATGGCCAGCCTGAA 624
Query 55620 GGGCATCGACCCGGCCGGCTCGCAGCGCGCGATGGACCTGTTCATGAAGGTCCAATACCT 55679
|| ||| ||||| ||| ||||||||||| |||||| | | ||| | ||| |
Sbjct 623 AGGGATCAGCCCGGACGGTTCGCAGCGCGCCTGGGACCTCTACGCCAAGTCGCGCTACAT 564
Query 55680 -GCGCAGCAAGAAGCCGGGCCG---CGCGCTCGTGGCCGCGTCCGGCACGCCGGTCACGA 55735
|||||| | |||||| || | | || || ||||| ||||||||| |||| |
Sbjct 563 CGCGCAG-ACCCAGCCGGCGCGGAACCTGATCCTG---GCGTCGGGCACGCCGATCACCA 508
Query 55736 ACACGATGGGCGAGCTCTACACCGCGCAACGCTTCTTCCAGCCCGAGCAGCTTGCAGAGG 55795
|||| ||||||||| | | || | ||| |||||| | ||||| || ||| | |||
Sbjct 507 ACACCATGGGCGAGATGTTCAGCCTGCAGCGCTTCATGCAGCCGGACGTGCTGGAGGAGC 448
Query 55796 ATGGTCTGGATACGTTCGACGCGTGGGC--CAACCAGTACGGCGACATCGTTGCGGGCTT 55853
|| ||| | ||||||||| ||||| | ||| | |||||||| || ||| |
Sbjct 447 GCGGCCTGCACGAGTTCGACGCCTGGGCCTCGACC--TTCGGCGACACGGTGACGGAACT 390
Query 55854 CGAGCAGAACGCCG-CCGGCGGCTACGAGGTCGTGAGCCGCTTCGCGAAGTTCCAGAACG 55912
|||| | | |||| ||||| |||| || |||| || |||||||| ||| ||||
Sbjct 389 GGAGCTGCA-GCCGTCCGGCAACTACCAGCCGGTGACGCGGTTCGCGAACTTCGTCAACG 331
Query 55913 TGCCCGAGCTGATGCGCCGCG-TGCGCTCGTTCATGGACATCCTGA-CGAG-CCAACAGC 55969
|| | || ||||| |||| | | |||||| || |||| | ||| | || || || |
Sbjct 330 TGGCGGACCTGAT-CGCCATGTTCCGCTCGGTCGCGGACGTGGTGAGCAAGACCGAC--C 274
Query 55970 TCGCGCAG-TACGTCGACCGTCCGGCGATCGAGGGCGGCGGCCGTCAGATCATGGTC-AC 56027
| |||| | || | | | | |||| | | |||| || |||||| || | |
Sbjct 273 T-GCGCGGTTATGCCAAGCTGCCGGAGGTTCGCACCGGCAAGCGGCAGATCCTGACCTCC 215
Query 56028 GCCGGAGCCGTTCGG-CTACAAGGCATACCAGAAGGCGCTCGAGCAGCGCATCACCGCGA 56086
||| | | | ||| || |||||| || ||| || | |||| ||| | |
Sbjct 214 GCC--ACCAGCCCGGCCTTCAAGGCTTATCAGCGCATCCTGGCCAAGCGGATCGACATCA 157
Query 56087 TCCGCAACCGCAAGGGCCCGCCGCAGAAGGGGCAGGACATCATCCTGAACGTGATCGCGG 56146
|| | ||||||||| ||| ||||||||||||||||| | || ||| ||| | |
Sbjct 156 TCAAGGAGCGCAAGGGCAAGCCCGAGAAGGGGCAGGACATCTTGCTCTCCGTCATCACCG 97
Query 56147 ACGGCCGTTTCTCGGCGATCGACATGCGTTTCGT 56180
||||||| ||||||||||| |||| |||||
Sbjct 96 ACGGCCGGCATGCGGCGATCGACCTGCGGTTCGT 63
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 203964979821447
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