Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq13269 98.7 8e-16 seq7211 98.7 8e-16 seq1750 95.1 1e-14 seq23250 86.0 5e-12 seq8957 82.4 6e-11 seq3441 82.4 6e-11 >seq13269 Length=14915 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| |||||||||||||| ||||| ||| | ||||| |||||||| || || || Sbjct 13628 TCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAA 13569 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | | ||||||||| || | | ||| |||||| |||||| ||| | | Sbjct 13568 ATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATTTTAGCCTTCACATTA 13509 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 |||| ||||| | | ||| || | || ||||| || |||||||| || || ||| Sbjct 13508 TCTATTGTATCAGAACTCTCAACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTCTTGACA 13449 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 13448 AAAATCTGCATC 13437 >seq7211 Length=36427 Score = 98.7 bits (108), Expect = 8e-16 Identities = 178/256 (70%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | ||| | ||| | ||| || || ||| || |||||||||||||| || Sbjct 7759 ACCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCTTTCTGAATGTTGTAATCGGC 7700 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||||| || || ||| || | || | | |||||| ||| ||| Sbjct 7699 GAGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGG 7640 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||| ||| ||| || ||| | | | || ||||| |||| |||| Sbjct 7639 AATCCCTTCCTTATCCTAAATCTTGGCCTTCACGTTGTCG--ATGGTGTCGGAGCTCTCC 7582 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTGA 48736 ||| | || ||||| || ||||| |||||||||||||| ||||||||| | |||| Sbjct 7581 ACCTCCAACGTGATGGTCTTGCCGGTCAGAGTTTTCACAAAGATCTGCATC--TTTTTGA 7524 Query 48737 TCGA-AGAAAGAGTGA 48751 | || ||| |||| || Sbjct 7523 TAGAGAGAGAGAGAGA 7508 >seq1750 Length=74028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||||||||||||||||||||||||||||||| || | || || ||||| Sbjct 62669 ATGCAGGGTGCTCTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCTTCAAGCTG 62610 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | | ||||||||| ||| || Sbjct 62609 CTTTCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATCCCCTCCTTGTCCTGAATCTT 62550 Query 48643 CTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| || | | | ||||| || | | |||| ||| | || ||||| || || | Sbjct 62549 -TGCTTTAACATTATCAATGGTGTCAGAACTCTCCACCTCAAGGGTGATGGTCTTTCCTG 62491 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | ||||| || ||||||||||||||| Sbjct 62490 TCAGAGTCTTAACAAAAATCTGCATC 62465 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || ||||| |||||| |||||||| ||||| |||| ||| | ||||| || ||| Sbjct 61984 TGGAGTGTAGACTCCTTCTGAATGTTATAATCGGCCAGAGTTCGGCCATCCTCAAGTTGC 61925 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| || | ||||||||| || | | ||| |||||| ||||||| Sbjct 61924 TTTCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGAATTTTC 61865 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | |||||||||||| | ||| || | || ||||| || || ||| Sbjct 61864 GCCTTCACATTATCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTTCCCAGTG 61805 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || || || |||||||||||| Sbjct 61804 AGTGTCTTGACGAAAATCTGCATC 61781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||||||||||| || || ||||| || || || ||| || | |||||||||| Sbjct 62897 ATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCTGC-AAGTGTGCGACCATCCTCCAGCT 62839 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || | | || | | ||||||||| || | | ||||||||| ||| | Sbjct 62838 GCTTTCCTGCAAAGATGAGCCTCTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGAATCT 62779 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | | |||||||| | |||| |||| ||| || || || || | Sbjct 62778 TTGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACTTCGAGTGTGATTGTCTTGCCTG 62719 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||||||||||||||| Sbjct 62718 TTAGCGTCTTCACAAAAATCTGCAT 62694 >seq23250 Length=6169 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | ||| | ||| || || ||| || |||||||||||||| | Sbjct 5883 CCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCTTTCTGAATGTTGTAATCGGAG 5824 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||||| || || ||| || | || | | |||||| ||| ||| Sbjct 5823 AGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGGA 5764 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||| ||| ||| || ||| | | | || ||||| |||| |||| Sbjct 5763 ATCCCATCCTTATCCTAAATCTTGGCCTTCACGTTGTCG--ATGGTGTCGGAGCTCTCCA 5706 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || ||||| |||||||||||||| ||||||||| Sbjct 5705 CCTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACAAAGATCTGCATC 5656 >seq8957 Length=24100 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | ||| | ||| | || || || |||||| ||||||||||||||||| Sbjct 15278 ACCTCCACGGAGCCTCAGCACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCAGC 15337 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| | ||||| ||| || | |||| | |||||| ||| || Sbjct 15338 GAGGGTGCGGCCGTCCTCTAATTGCTTCCCGGCGAAGATTAGCCTCTGCTGGTCCGGTGG 15397 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||| ||| || ||||| | | || || |||| ||| Sbjct 15398 AATCCCCTCCTTGTCTTGAATCTTGGCCTTGACATTATCAATCGTGTCGGAGCTCTCTAC 15457 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || ||||| || || || ||||||||||| |||||||| Sbjct 15458 CTCCAAGGTAATCGTTTTTCCAGTTAGGGTTTTCACAAAGATCTGCAT 15505 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||| || ||||| ||||| || || | || |||| |||| ||| Sbjct 15759 TGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGGCCGTCTTCCAATTGC 15818 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || || ||||||||||| ||| | | ||||||||| || || Sbjct 15819 TTTCCGGCGAAGATCAATCGCTGCTGATCGGGCGGGATGCCTTCCTTGTCTTGGATCTTG 15878 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| |||| |||| ||| | || ||||| || |||| Sbjct 15879 GCCTTCACGTTGTCG--ATGGTGTCGGAGCTCTCCACCTCCAACGTGATGGTCTTGCCGG 15936 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | ||||||||||| || ||||||||| Sbjct 15937 TCAGAGTTTTCACGAAGATCTGCATC 15962 >seq3441 Length=50379 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTG 48582 ||||| || ||||||||| ||||| ||||| || || ||| || | ||||||| ||| Sbjct 13943 TGAAGAGTTGACTCCTTTTGGATGTTATAATCTGC-AAGAGTCCGCCCATCCTCCAACTG 14001 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | |||| | | |||||| || || | | || |||||| ||| || Sbjct 14002 CTTACCAGCAAAAATCAGCCTCTGCTGGTCGGGTGGAATGCCCTCTTTGTCCTGAATCTT 14061 Query 48643 CTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 |||| | | | |||||||| | | ||| ||| | |||||||||||||| | Sbjct 14062 A-GCTTTTACGTTGTCAATGGTATCAGAACTTTCCACCTCCAGAGTTATGGTTTTACCAG 14120 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | | || |||||||||||||||||| Sbjct 14121 TCAATGTCTTCACAAAAATCTGCATC 14146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420565354207589