Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq13269 98.7 8e-16
seq7211 98.7 8e-16
seq1750 95.1 1e-14
seq23250 86.0 5e-12
seq8957 82.4 6e-11
seq3441 82.4 6e-11
>seq13269
Length=14915
Score = 98.7 bits (108), Expect = 8e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
||||| |||||||||||||| ||||| ||| | ||||| |||||||| || || ||
Sbjct 13628 TCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAA 13569
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655
|| | | ||||||||| || | | ||| |||||| |||||| ||| | |
Sbjct 13568 ATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATTTTAGCCTTCACATTA 13509
Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715
|||| ||||| | | ||| || | || ||||| || |||||||| || || |||
Sbjct 13508 TCTATTGTATCAGAACTCTCAACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTCTTGACA 13449
Query 48716 AAAATCTGCATC 48727
||||||||||||
Sbjct 13448 AAAATCTGCATC 13437
>seq7211
Length=36427
Score = 98.7 bits (108), Expect = 8e-16
Identities = 178/256 (70%), Gaps = 7/256 (3%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| || | ||| | ||| | ||| || || ||| || |||||||||||||| ||
Sbjct 7759 ACCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCTTTCTGAATGTTGTAATCGGC 7700
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| || ||||||||| || || ||| || | || | | |||||| ||| |||
Sbjct 7699 GAGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGG 7640
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676
| | |||||| ||| ||| || ||| | | | || ||||| |||| ||||
Sbjct 7639 AATCCCTTCCTTATCCTAAATCTTGGCCTTCACGTTGTCG--ATGGTGTCGGAGCTCTCC 7582
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTGA 48736
||| | || ||||| || ||||| |||||||||||||| ||||||||| | ||||
Sbjct 7581 ACCTCCAACGTGATGGTCTTGCCGGTCAGAGTTTTCACAAAGATCTGCATC--TTTTTGA 7524
Query 48737 TCGA-AGAAAGAGTGA 48751
| || ||| |||| ||
Sbjct 7523 TAGAGAGAGAGAGAGA 7508
>seq1750
Length=74028
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/206 (71%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582
||| || ||||||||||||||||||||||||||||||| || | || || |||||
Sbjct 62669 ATGCAGGGTGCTCTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCTTCAAGCTG 62610
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || | | || | | ||||||||| || | | ||||||||| ||| ||
Sbjct 62609 CTTTCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATCCCCTCCTTGTCCTGAATCTT 62550
Query 48643 CTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||| || | | | ||||| || | | |||| ||| | || ||||| || || |
Sbjct 62549 -TGCTTTAACATTATCAATGGTGTCAGAACTCTCCACCTCAAGGGTGATGGTCTTTCCTG 62491
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
| ||||| || |||||||||||||||
Sbjct 62490 TCAGAGTCTTAACAAAAATCTGCATC 62465
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| ||||| |||||| |||||||| ||||| |||| ||| | ||||| || |||
Sbjct 61984 TGGAGTGTAGACTCCTTCTGAATGTTATAATCGGCCAGAGTTCGGCCATCCTCAAGTTGC 61925
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || | |||| || | ||||||||| || | | ||| |||||| |||||||
Sbjct 61924 TTTCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGAATTTTC 61865
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||| | | |||||||||||| | ||| || | || ||||| || || |||
Sbjct 61864 GCCTTCACATTATCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTTCCCAGTG 61805
Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727
|| || || || ||||||||||||
Sbjct 61804 AGTGTCTTGACGAAAATCTGCATC 61781
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581
||| || ||||||||||| || || ||||| || || || ||| || | ||||||||||
Sbjct 62897 ATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCTGC-AAGTGTGCGACCATCCTCCAGCT 62839
Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641
|||| || | | || | | ||||||||| || | | ||||||||| ||| |
Sbjct 62838 GCTTTCCTGCAAAGATGAGCCTCTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGAATCT 62779
Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
| ||| | | | |||||||| | |||| |||| ||| || || || || |
Sbjct 62778 TTGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACTTCGAGTGTGATTGTCTTGCCTG 62719
Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726
| || || |||||||||||||||||
Sbjct 62718 TTAGCGTCTTCACAAAAATCTGCAT 62694
>seq23250
Length=6169
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| || | ||| | ||| | ||| || || ||| || |||||||||||||| |
Sbjct 5883 CCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCTTTCTGAATGTTGTAATCGGAG 5824
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || ||||||||| || || ||| || | || | | |||||| ||| |||
Sbjct 5823 AGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGGA 5764
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677
| | ||||| ||| ||| || ||| | | | || ||||| |||| ||||
Sbjct 5763 ATCCCATCCTTATCCTAAATCTTGGCCTTCACGTTGTCG--ATGGTGTCGGAGCTCTCCA 5706
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||| | || ||||| || ||||| |||||||||||||| |||||||||
Sbjct 5705 CCTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACAAAGATCTGCATC 5656
>seq8957
Length=24100
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| || | ||| | ||| | || || || |||||| |||||||||||||||||
Sbjct 15278 ACCTCCACGGAGCCTCAGCACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCAGC 15337
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| || ||||||| | ||||| ||| || | |||| | |||||| ||| ||
Sbjct 15338 GAGGGTGCGGCCGTCCTCTAATTGCTTCCCGGCGAAGATTAGCCTCTGCTGGTCCGGTGG 15397
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||||| ||| || ||||| | | || || |||| |||
Sbjct 15398 AATCCCCTCCTTGTCTTGAATCTTGGCCTTGACATTATCAATCGTGTCGGAGCTCTCTAC 15457
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || || ||||| || || || ||||||||||| ||||||||
Sbjct 15458 CTCCAAGGTAATCGTTTTTCCAGTTAGGGTTTTCACAAAGATCTGCAT 15505
Score = 82.4 bits (90), Expect = 6e-11
Identities = 143/206 (69%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| ||| || ||||| ||||| || || | || |||| |||| |||
Sbjct 15759 TGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGGCCGTCTTCCAATTGC 15818
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| || | || || ||||||||||| ||| | | ||||||||| || ||
Sbjct 15819 TTTCCGGCGAAGATCAATCGCTGCTGATCGGGCGGGATGCCTTCCTTGTCTTGGATCTTG 15878
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||| | | | || ||||| |||| |||| ||| | || ||||| || ||||
Sbjct 15879 GCCTTCACGTTGTCG--ATGGTGTCGGAGCTCTCCACCTCCAACGTGATGGTCTTGCCGG 15936
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
| ||||||||||| || |||||||||
Sbjct 15937 TCAGAGTTTTCACGAAGATCTGCATC 15962
>seq3441
Length=50379
Score = 82.4 bits (90), Expect = 6e-11
Identities = 145/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTG 48582
||||| || ||||||||| ||||| ||||| || || ||| || | ||||||| |||
Sbjct 13943 TGAAGAGTTGACTCCTTTTGGATGTTATAATCTGC-AAGAGTCCGCCCATCCTCCAACTG 14001
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|||||| | |||| | | |||||| || || | | || |||||| ||| ||
Sbjct 14002 CTTACCAGCAAAAATCAGCCTCTGCTGGTCGGGTGGAATGCCCTCTTTGTCCTGAATCTT 14061
Query 48643 CTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
|||| | | | |||||||| | | ||| ||| | |||||||||||||| |
Sbjct 14062 A-GCTTTTACGTTGTCAATGGTATCAGAACTTTCCACCTCCAGAGTTATGGTTTTACCAG 14120
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
| | || ||||||||||||||||||
Sbjct 14121 TCAATGTCTTCACAAAAATCTGCATC 14146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420565354207589
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