Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5378 122 5e-23 seq4718 116 2e-21 seq603 111 8e-20 seq4293 107 1e-18 seq24 107 1e-18 seq452 105 3e-18 seq81070 104 1e-17 seq43725 104 1e-17 seq9396 104 1e-17 seq731 104 1e-17 seq226 104 1e-17 seq38226 102 4e-17 seq25899 102 4e-17 seq15953 102 4e-17 seq2730 102 4e-17 seq1563 102 4e-17 seq1072 102 4e-17 seq490 102 4e-17 seq125543 100 1e-16 seq71870 100 1e-16 seq19100 100 1e-16 seq3969 100 1e-16 seq2217 96.9 2e-15 seq10380 86.0 3e-12 >seq5378 Length=37266 Score = 122 bits (134), Expect = 5e-23 Identities = 89/103 (86%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAAT--CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| |||| ||| | ||||| || | ||||||||| | | ||||||||| ||||||| Sbjct 15694 AAATAAAGAAATAAAAGAAAATACCATAATGGCCCATGCAGGTATCGAACCTGCGACCTT 15753 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| ||||||||||||||| |||| Sbjct 15754 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 15796 >seq4718 Length=41220 Score = 116 bits (128), Expect = 2e-21 Identities = 86/100 (86%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 |||||| || |||||||| ||| ||||||||| | | |||||||| ||||||||||| Sbjct 37766 ATATAGGTTTCATAAAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 37823 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||| |||| |||||||||| ||||| Sbjct 37824 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 37863 >seq603 Length=108363 Score = 111 bits (122), Expect = 8e-20 Identities = 85/100 (85%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 || ||| || ||| || |||| | ||||||||||| | | |||||||| |||||||||| Sbjct 50389 AAAATAAAAATAA-AATAAATTAGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 50447 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| |||| |||||||||| |||| Sbjct 50448 GTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 50487 >seq4293 Length=43494 Score = 107 bits (118), Expect = 1e-18 Identities = 77/88 (88%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 27558 TAAAAAATAAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 27617 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| |||||||||| |||| Sbjct 27618 ACGCTCTAACCAGCTGAGCTAATAGGCC 27645 >seq24 Length=230074 Score = 107 bits (118), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 11432 TATAGAATTAATAAAAA--ATCA----AATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 ||||||| ||||| || |||| || ||||||||| | | |||||||| |||||| Sbjct 142024 TATAGAAAAAATAAGAATAATCACCAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCT 141965 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||||| |||| |||||||||| ||||| Sbjct 141964 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 141920 >seq452 Length=120561 Score = 105 bits (116), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 37754 AAATCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 37813 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 37814 CCAACTGAGCTAATAGGCC 37832 >seq81070 Length=1007 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 279 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 338 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 339 TGAGCTAATAGGCC 352 >seq43725 Length=3509 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || |||| ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1414 AAAAAGAAATTTTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1355 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 1354 GACGCTCTAACCAGCTGAGCTAATAGGCC 1326 >seq9396 Length=22205 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || |||| ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 9125 AAAAAGAAATTTTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 9066 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 9065 GACGCTCTAACCAGCTGAGCTAATAGGCC 9037 >seq731 Length=103636 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 39367 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 39426 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 39427 TGAGCTAATAGGCC 39440 >seq226 Length=144386 Score = 104 bits (114), Expect = 1e-17 Identities = 81/97 (84%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATT----GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 || ||| | ||||| ||||| |||||||| | | || ||||| ||||||||||||| Sbjct 20195 AAGTAAAATAAAATAAAATTTTTTGGCCCATGCAGGTCTCAAACCTGCGACCTTCGCGTT 20136 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| ||||||||||||||| |||| Sbjct 20135 ATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 20099 >seq38226 Length=2286 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 159 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 100 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 99 TGAGCTAATAGGCCG 85 >seq25899 Length=4718 Score = 102 bits (112), Expect = 4e-17 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1813 AATAGAAAAGGAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1870 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 1871 GACGCTCTAACCAGCTGAGCTAATAGGCC 1899 >seq15953 Length=11798 Score = 102 bits (112), Expect = 4e-17 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 11630 AAAAAGTTAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 11687 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||| ||||| Sbjct 11688 GCTCTAACCAGCTGAGCTAATAGGCCG 11714 >seq2730 Length=57236 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 28216 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 28157 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 28156 CAGCTGAGCTAATAGGCC 28139 >seq1563 Length=75918 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 31545 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 31486 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 31485 CAGCTGAGCTAATAGGCC 31468 >seq1072 Length=88849 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 25022 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 24963 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 24962 CTGAGCTAATAGGCC 24948 >seq490 Length=115734 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | | |||||| ||||||||||||||||||||||||||||| || Sbjct 55573 AAAATGGCCCATGCAGGTCTTGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 55514 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 55513 CAACTGAGCTAATAGGCC 55496 >seq125543 Length=12181 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 171 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 230 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 231 TGAGCTAATAGGCC 244 >seq71870 Length=1227 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 747 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 688 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 687 TGAGCTAATAGGCC 674 >seq19100 Length=8307 Score = 100 bits (110), Expect = 1e-16 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11446 AAAATCAA-AT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || ||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 6424 AATATCAACATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 6365 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 6364 GCTCTAACCAGCTGAGCTAATAGGCC 6339 >seq3969 Length=49845 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 5821 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 5880 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5881 TGAGCTAATAGGCC 5894 >seq2217 Length=69114 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| | || Sbjct 41026 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAATCAG 40967 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 40966 CTGAGCTAATAGGCC 40952 >seq10380 Length=19883 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| || |||||||||||||||||| || || | |||||| Sbjct 426 TGGCCCATGCAGGTTTCGAACCTGCGGCCTTCGCGTTATTAGCACAACTCTTTGACCAAC 485 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 486 TGAGCTAATAGGCC 499 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261065462009764