Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq85577 87.8 7e-13 seq65589 84.2 9e-12 >seq85577 Length=924 Score = 87.8 bits (96), Expect = 7e-13 Identities = 209/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 11200 CACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAG 11259 ||| | |||||||||||| | ||||||||| | ||| ||||||| |||||||| | || Sbjct 496 CACGATCTCGGTGCTGTACTTGTCCTGGCCCTGCTGATCCTGCCATTTGCGGGTCTGCAG 555 Query 11260 GCTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAG 11319 ||| |||||||| |||| ||| ||||| |||||| | || | |||| | ||| || Sbjct 556 CGCGCCCTCGATGTAAACCTTGGACCCCTTGCGCAGGAAACGCTCGGCGACGTTGGCGAG 615 Query 11320 CC---GGCCAAAGAGCACGACCCGGTGCCACTCGGT-GCGCTCCTGCTGCTGGCCGGTCT 11375 | | |||| | ||||| ||||| ||||| |||| ||| ||||| | Sbjct 616 GCCTTCGTTGAAGATCGCGACCGAATGCCATTCGGTCTTTTTCCTTGCGCTCGCCGGAAT 675 Query 11376 GCTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCC-- 11433 ||| ||||| ||||| || || | || | | | || |||| ||||| Sbjct 676 TGCGGTCCTTCCACGACTCGCTGGTCGCGA---TGCGCAGGTTCACGACCTTGCCGCCGT 732 Query 11434 -CGGGGTAGATCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCA 11492 | || || | | || ||||| | || |||| |||||| | ||| |||||||| | Sbjct 733 TCTGGAACGAGCGCGATTCGGGATCGCGCCCGAGATTGCCGACGATGATGACCTTGTTGA 792 Query 11493 CTCCGCGTGCCAT 11505 | | || ||||| Sbjct 793 CGCTGCCCGCCAT 805 >seq65589 Length=857 Score = 84.2 bits (92), Expect = 9e-12 Identities = 138/196 (70%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 11197 GACCACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCG 11256 || ||| ||||||||| |||| | || |||| |||| | |||||| ||||| | Sbjct 404 GAGCACCACCTCGGTGGTGTACTTCTCGACGCCGGACTGGTCGGTCCACTTCCGGGTCTG 345 Query 11257 TAGGCTG-CCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGG 11315 | ||| |||||||||||||||| |||||||| |||||||| ||| | || | || Sbjct 344 CAA-CTGACCTTCGATGTAGACCTTCGAGCCCTTGCGCAGGTACTGCTCGGCCACCCGGG 286 Query 11316 CCAGCCGGCC---AAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGG 11372 ||| | | ||| ||||||| |||||||||||| ||||| ||| ||||| Sbjct 285 ACAGGTTGTCGTTGTAGATCACGACCGAGTGCCACTCGGTCTTCTCCTTGCGCTCGCCGG 226 Query 11373 TCTGCTTGTCTTTCCA 11388 |||||| ||||| Sbjct 225 AGGCCTTGTCCTTCCA 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208159739129524