Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq60400 161 2e-35 seq65241 154 2e-33 seq1871 145 1e-30 seq2491 143 4e-30 seq2724 132 8e-27 seq528 123 4e-24 seq1826 116 6e-22 seq936 87.8 3e-13 >seq60400 Length=1650 Score = 161 bits (178), Expect = 2e-35 Identities = 190/253 (75%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| ||| |||| |||||||| || |||||||||||||||||| | ||||| |||||| Sbjct 385 AGAT-TCTGAGAGACAACATCCAGGGTATCACCAAGCCAGCTATCAGACGTCTCGCTCGT 443 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 |||||||| ||||||||| |||| | || |||| ||||||| |||| ||| | ||| Sbjct 444 CGTGGTGGTGTCAAGCGTATCTCAGCCATGATCTACGAAGAGACACGTGGTGTCCTCAAG 503 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAA 16626 |||||| | | || || | ||||||| || || || ||||||||||| || | || Sbjct 504 TCTTTCCTCGAATCAGTCATTCGTGATGCTGTTACA-TACACCGAGCACGCAAAGAGAAA 562 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686 ||| ||||| ||| |||| | || || || |||| | || ||||| | | ||||| Sbjct 563 GACCGTCACTTCCTTGGACGTTGTGTACGCTCTGAAGAGACAGGGCCGAACACTCTATGG 622 Query 16687 TTTTGGAAGTTAA 16699 ||| || ||||| Sbjct 623 TTTCGGTGGTTAA 635 >seq65241 Length=1441 Score = 154 bits (170), Expect = 2e-33 Identities = 193/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | ||||| | || || |||||||| || ||||| ||||| || | Sbjct 265 CGCCAAGCGCCACCGAAAGATCT-TGCGCGACAACATCCAGGGTATCACGAAGCCCGCCA 207 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||||||||||| || ||||||||| |||| | || |||| || |||| Sbjct 206 TCCGAAGATTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGCCATGATCTACGAGGAGA 147 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | |||| |||||| || || |||| |||||| || ||| |||| Sbjct 146 CGCGCGGTGTCCTCAAGACCTTCCTTGAGGGTGTCATCCGTGATGCCGTCACCTACACCG 87 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||| | || ||||||| ||| | || || |||| Sbjct 86 AGCACGCCAAGCGCAAGACCGTCACATCCCTCGACGTCGTCTACGCACTCAAGCGACAAG 27 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | || ||||| || Sbjct 26 GCCGCACCCTCTACGGTTTCGG 5 >seq1871 Length=70747 Score = 145 bits (160), Expect = 1e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| |||||||||||||| || || || ||| |||| | ||||| || ||| Sbjct 64390 GATAACATCCAGGGAATCACCAAGCCTGCCATTCGGCGTTTGGCGAGGCGTGGCGGGGTC 64331 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| |||| || | ||||||||||| || Sbjct 64330 AAGCGTATCAGCGGCCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCCTGGAG 64271 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | || ||| | ||| |||||||||||| || |||||||| ||| || Sbjct 64270 AACGTGATTCGCGACGCTGTGACCTACACCGAGCACGCTCGCCGCAAGACTGTTACCGCC 64211 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| |||| | || ||| | | | |||||||||||| | ||| Sbjct 64210 ATGGATGTTGTTTATGCTCTGAAGAGGCAGGGCAGGACTCTCTATGGTTTTGGAGGCTAA 64151 Score = 145 bits (160), Expect = 1e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| |||||||| || || || ||| |||| | ||||| |||||| Sbjct 67327 GATAACATCCAGGGAATTACCAAGCCTGCCATTCGGCGTTTGGCCAGGCGTGGCGGAGTC 67268 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| |||| || | ||||||||| | || Sbjct 67267 AAGCGTATCAGCGGGCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCTTGGAG 67208 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | ||| |||||||||||| || |||||||| ||| || Sbjct 67207 AACGTGATTCGCGATGCTGTGACCTACACCGAGCACGCTCGCCGCAAGACTGTTACCGCC 67148 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || ||||| | || ||| | | ||||||| ||||| ||||| Sbjct 67147 ATGGATGTTGTTTACGCTTTGAAGAGGCAGGGCAGGACTCTTTATGGATTTGGGGGTTAA 67088 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || ||||| || || || ||| ||||| | ||||| |||||| Sbjct 11938 GATAACATCCAGGGAATTACGAAGCCTGCCATTCGGCGTTTGGCTAGGCGTGGCGGAGTC 11997 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| |||| || | ||||||||| | || Sbjct 11998 AAGCGTATCAGCGGGCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCTTGGAG 12057 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | ||| |||||||||||| || |||||||| || | Sbjct 12058 AACGTGATTCGTGATGCTGTGACCTACACCGAGCACGCTCGCCGCAAGACTGTTACTGCT 12117 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || || || ||||| | || ||| | | | ||||||||||| |||| Sbjct 12118 ATGGATGTTGTTTACGCTTTGAAGAGGCAGGGCAGGACTCTCTATGGTTTTGGGGGTTA 12176 Score = 131 bits (144), Expect = 3e-26 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || ||||| || || || |||||||| | ||||| |||||| Sbjct 60877 GATAACATCCAGGGAATTACGAAGCCTGCCATTCGGCGTCTGGCGAGGCGTGGCGGAGTC 60818 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| |||| || | ||||||||||| || Sbjct 60817 AAGCGTATCAGCGGGCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCCTGGAG 60758 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | || ||| | ||| || ||||||||| || ||||| || || || Sbjct 60757 AACGTGATTCGCGACGCTGTGACCTACACTGAGCACGCTCGCCGCAAGACCGTTACTGCC 60698 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| |||| | || ||| | | | |||||||||||| | ||| Sbjct 60697 ATGGATGTTGTTTATGCTCTGAAGAGGCAGGGCAGGACTCTCTATGGTTTTGGAGGCTAA 60638 >seq2491 Length=60936 Score = 143 bits (158), Expect = 4e-30 Identities = 180/247 (73%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| |||||||| ||||| || || |||||| ||||||| | || Sbjct 54101 TCTTCGCGATAACATCCAGGGAATCACGAAGCCTGCGATTCGTCGTTTGGCTCGCAGGGG 54042 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| |||||| || || || |||| || |||| |||| || | |||||||| Sbjct 54041 TGGAGTGAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTT 53982 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || |||| ||| || | ||| || |||||||| | | ||||| || Sbjct 53981 CTTGGAGAATGTGATCCGTGACGCCGTGACCTACACTGAGCACGCAAGGAGGAAGACCGT 53922 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| |||||||||| ||||| | ||||| | | | ||||| || || Sbjct 53921 GACGGCCATGGATGTCGTCTATGCCTTGAAGAGGCAAGGAAGGACTCTCTATGGGTTCGG 53862 Query 16693 AAGTTAA 16699 ||||| Sbjct 53861 CGGTTAA 53855 >seq2724 Length=59170 Score = 132 bits (146), Expect = 8e-27 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| |||||||||||||| || || || || ||||||| | ||| Sbjct 27666 CTTCGCGATAACATCCAGGGAATCACCAAGCCCGCGATTCGCCGATTGGCTCGCAGGGGT 27725 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || || || |||| || |||| |||| || | ||||||||| Sbjct 27726 GGAGTGAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTC 27785 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | || || | ||| || |||||||||| | ||||| || Sbjct 27786 TTGGAGAACGTGATTCGCGACGCCGTGACCTACACTGAGCACGCTAGGAGGAAGACCGTG 27845 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||||| |||||||||| ||||| | ||||| Sbjct 27846 ACGGCCATGGACGTCGTCTATGCCTTGAAGAGGCAAGG 27883 >seq528 Length=113145 Score = 123 bits (136), Expect = 4e-24 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| |||||||| ||||| || || |||||| |||||||| | || Sbjct 109069 TCTCCGTGATAACATCCAGGGAATCACAAAGCCTGCCATTCGTCGTTTGGCTCGTAGAGG 109010 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| |||||| || || | |||| || |||| |||| || | |||||||| Sbjct 109009 AGGAGTGAAGCGTATCAGCGGTCTCATCTACGAGGAGACACGTGGAGTGCTCAAGATCTT 108950 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| || ||| || ||| | || || |||||||| || |||||||| Sbjct 108949 TCTCGAGAATGTGATCAGGGACGCTGTGACTTACACTGAGCACGCGCGTCGCAAGACTGT 108890 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| |||| ||||| | || | || ||| | | | ||||| ||||| Sbjct 108889 GACTGCCATGGATGTCGTGTATGCTCTCAAGAGGCAGGGCAGGACCTTGTATGGGTTTGG 108830 Query 16693 AAGTTA 16698 |||| Sbjct 108829 GGGTTA 108824 >seq1826 Length=69982 Score = 116 bits (128), Expect = 6e-22 Identities = 174/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||||| ||||||||||| || ||||| ||||| || ||||||||| ||||||| | || Sbjct 53727 TCTTCATGATAACATCCAGGGGATCACAAAGCCTGCGATCCGTCGTTTGGCTCGCAGGGG 53786 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| ||| || ||| || | | | || |||| ||| | | |||||||| Sbjct 53787 TGGAGTGAAGTGTATCTGCGGTCTAATTCACGAGGAGACATGTGGCATCCTCAAGATCTT 53846 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| ||| ||||||||||| | ||| || ||||||| | | ||||| | Sbjct 53847 TTTGGAGAACGTGATCCATGATGCCGTGACCTACACTGAGCACGAAAGGAGGAAGACCAT 53906 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| |||||||||| ||||| | ||||| | | | ||||| || || Sbjct 53907 GACGGCCATGGATGTCGTCTATGCCTTGAAGAGGCAAGGAAGGACTCTCTATGGGTTCGG 53966 Query 16693 AAGTTAA 16699 ||||| Sbjct 53967 TGGTTAA 53973 >seq936 Length=93997 Score = 87.8 bits (96), Expect = 3e-13 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || |||||||| |||||||| || || | |||| | | || |||| Sbjct 62533 GAGATAACATTCAGGGAATCACAAAGCCAGCCATTCGGAGATTGGCGAGGAGAGGAGGAG 62474 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||| | || || | |||| ||||| | | | || | ||||||||| | Sbjct 62473 TCAAGAGGATCAGCGGCCTCATCTACGAAGAAACCAGAGGAGTCCTCAAGATCTTCTTGG 62414 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | |||||| | || || |||||||||| | || ||||| ||| Sbjct 62413 AGAACGTGATTCGTGATGCCGTGACTTACACTGAGCACGCTAGGAGGAAAACTGTGACCG 62354 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | ||||| || | || | || || | | | ||||||||||| ||| Sbjct 62353 CCATGGATGTGGTCTACGCGCTCAAGAGGCAGGGAAGGACCCTGTATGGTTTTGGGGGTT 62294 Query 16698 AAT 16700 || Sbjct 62293 GAT 62291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78953058642177