Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq60400 161 2e-35
seq65241 154 2e-33
seq1871 145 1e-30
seq2491 143 4e-30
seq2724 132 8e-27
seq528 123 4e-24
seq1826 116 6e-22
seq936 87.8 3e-13
>seq60400
Length=1650
Score = 161 bits (178), Expect = 2e-35
Identities = 190/253 (75%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507
|||| ||| |||| |||||||| || |||||||||||||||||| | ||||| ||||||
Sbjct 385 AGAT-TCTGAGAGACAACATCCAGGGTATCACCAAGCCAGCTATCAGACGTCTCGCTCGT 443
Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567
|||||||| ||||||||| |||| | || |||| ||||||| |||| ||| | |||
Sbjct 444 CGTGGTGGTGTCAAGCGTATCTCAGCCATGATCTACGAAGAGACACGTGGTGTCCTCAAG 503
Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAA 16626
|||||| | | || || | ||||||| || || || ||||||||||| || | ||
Sbjct 504 TCTTTCCTCGAATCAGTCATTCGTGATGCTGTTACA-TACACCGAGCACGCAAAGAGAAA 562
Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686
||| ||||| ||| |||| | || || || |||| | || ||||| | | |||||
Sbjct 563 GACCGTCACTTCCTTGGACGTTGTGTACGCTCTGAAGAGACAGGGCCGAACACTCTATGG 622
Query 16687 TTTTGGAAGTTAA 16699
||| || |||||
Sbjct 623 TTTCGGTGGTTAA 635
>seq65241
Length=1441
Score = 154 bits (170), Expect = 2e-33
Identities = 193/262 (74%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || || | ||||| | || || |||||||| || ||||| ||||| || |
Sbjct 265 CGCCAAGCGCCACCGAAAGATCT-TGCGCGACAACATCCAGGGTATCACGAAGCCCGCCA 207
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| | ||||||||||||| || ||||||||| |||| | || |||| || ||||
Sbjct 206 TCCGAAGATTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGCCATGATCTACGAGGAGA 147
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | ||| | |||| |||||| || || |||| |||||| || ||| ||||
Sbjct 146 CGCGCGGTGTCCTCAAGACCTTCCTTGAGGGTGTCATCCGTGATGCCGTCACCTACACCG 87
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||| | || ||||||| ||| | || || ||||
Sbjct 86 AGCACGCCAAGCGCAAGACCGTCACATCCCTCGACGTCGTCTACGCACTCAAGCGACAAG 27
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | || ||||| ||
Sbjct 26 GCCGCACCCTCTACGGTTTCGG 5
>seq1871
Length=70747
Score = 145 bits (160), Expect = 1e-30
Identities = 176/240 (73%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
||||||||||| |||||||||||||| || || || ||| |||| | ||||| || |||
Sbjct 64390 GATAACATCCAGGGAATCACCAAGCCTGCCATTCGGCGTTTGGCGAGGCGTGGCGGGGTC 64331
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || || | |||| || |||| |||| || | ||||||||||| ||
Sbjct 64330 AAGCGTATCAGCGGCCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCCTGGAG 64271
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | || ||| | ||| |||||||||||| || |||||||| ||| ||
Sbjct 64270 AACGTGATTCGCGACGCTGTGACCTACACCGAGCACGCTCGCCGCAAGACTGTTACCGCC 64211
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | || ||||| |||| | || ||| | | | |||||||||||| | |||
Sbjct 64210 ATGGATGTTGTTTATGCTCTGAAGAGGCAGGGCAGGACTCTCTATGGTTTTGGAGGCTAA 64151
Score = 145 bits (160), Expect = 1e-30
Identities = 176/240 (73%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
||||||||||| ||||| |||||||| || || || ||| |||| | ||||| ||||||
Sbjct 67327 GATAACATCCAGGGAATTACCAAGCCTGCCATTCGGCGTTTGGCCAGGCGTGGCGGAGTC 67268
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || || | |||| || |||| |||| || | ||||||||| | ||
Sbjct 67267 AAGCGTATCAGCGGGCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCTTGGAG 67208
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | |||||| | ||| |||||||||||| || |||||||| ||| ||
Sbjct 67207 AACGTGATTCGCGATGCTGTGACCTACACCGAGCACGCTCGCCGCAAGACTGTTACCGCC 67148
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | || || || ||||| | || ||| | | ||||||| ||||| |||||
Sbjct 67147 ATGGATGTTGTTTACGCTTTGAAGAGGCAGGGCAGGACTCTTTATGGATTTGGGGGTTAA 67088
Score = 138 bits (152), Expect = 2e-28
Identities = 174/239 (73%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
||||||||||| ||||| || ||||| || || || ||| ||||| | ||||| ||||||
Sbjct 11938 GATAACATCCAGGGAATTACGAAGCCTGCCATTCGGCGTTTGGCTAGGCGTGGCGGAGTC 11997
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || || | |||| || |||| |||| || | ||||||||| | ||
Sbjct 11998 AAGCGTATCAGCGGGCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCTTGGAG 12057
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | ||||||| | ||| |||||||||||| || |||||||| || |
Sbjct 12058 AACGTGATTCGTGATGCTGTGACCTACACCGAGCACGCTCGCCGCAAGACTGTTACTGCT 12117
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
|||||| | || || || ||||| | || ||| | | | ||||||||||| ||||
Sbjct 12118 ATGGATGTTGTTTACGCTTTGAAGAGGCAGGGCAGGACTCTCTATGGTTTTGGGGGTTA 12176
Score = 131 bits (144), Expect = 3e-26
Identities = 173/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
||||||||||| ||||| || ||||| || || || |||||||| | ||||| ||||||
Sbjct 60877 GATAACATCCAGGGAATTACGAAGCCTGCCATTCGGCGTCTGGCGAGGCGTGGCGGAGTC 60818
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || || | |||| || |||| |||| || | ||||||||||| ||
Sbjct 60817 AAGCGTATCAGCGGGCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCCTGGAG 60758
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | || ||| | ||| || ||||||||| || ||||| || || ||
Sbjct 60757 AACGTGATTCGCGACGCTGTGACCTACACTGAGCACGCTCGCCGCAAGACCGTTACTGCC 60698
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | || ||||| |||| | || ||| | | | |||||||||||| | |||
Sbjct 60697 ATGGATGTTGTTTATGCTCTGAAGAGGCAGGGCAGGACTCTCTATGGTTTTGGAGGCTAA 60638
>seq2491
Length=60936
Score = 143 bits (158), Expect = 4e-30
Identities = 180/247 (73%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| ||||||||||| |||||||| ||||| || || |||||| ||||||| | ||
Sbjct 54101 TCTTCGCGATAACATCCAGGGAATCACGAAGCCTGCGATTCGTCGTTTGGCTCGCAGGGG 54042
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|||||| |||||| || || || |||| || |||| |||| || | ||||||||
Sbjct 54041 TGGAGTGAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTT 53982
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| | ||| || |||| ||| || | ||| || |||||||| | | ||||| ||
Sbjct 53981 CTTGGAGAATGTGATCCGTGACGCCGTGACCTACACTGAGCACGCAAGGAGGAAGACCGT 53922
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| |||||||||| ||||| | ||||| | | | ||||| || ||
Sbjct 53921 GACGGCCATGGATGTCGTCTATGCCTTGAAGAGGCAAGGAAGGACTCTCTATGGGTTCGG 53862
Query 16693 AAGTTAA 16699
|||||
Sbjct 53861 CGGTTAA 53855
>seq2724
Length=59170
Score = 132 bits (146), Expect = 8e-27
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
||||| ||||||||||| |||||||||||||| || || || || ||||||| | |||
Sbjct 27666 CTTCGCGATAACATCCAGGGAATCACCAAGCCCGCGATTCGCCGATTGGCTCGCAGGGGT 27725
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| |||||| || || || |||| || |||| |||| || | |||||||||
Sbjct 27726 GGAGTGAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTC 27785
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
| ||| ||| || | || || | ||| || |||||||||| | ||||| ||
Sbjct 27786 TTGGAGAACGTGATTCGCGACGCCGTGACCTACACTGAGCACGCTAGGAGGAAGACCGTG 27845
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| ||||||| |||||||||| ||||| | |||||
Sbjct 27846 ACGGCCATGGACGTCGTCTATGCCTTGAAGAGGCAAGG 27883
>seq528
Length=113145
Score = 123 bits (136), Expect = 4e-24
Identities = 175/246 (71%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
||| || ||||||||||| |||||||| ||||| || || |||||| |||||||| | ||
Sbjct 109069 TCTCCGTGATAACATCCAGGGAATCACAAAGCCTGCCATTCGTCGTTTGGCTCGTAGAGG 109010
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||||| |||||| || || | |||| || |||| |||| || | ||||||||
Sbjct 109009 AGGAGTGAAGCGTATCAGCGGTCTCATCTACGAGGAGACACGTGGAGTGCTCAAGATCTT 108950
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| ||| || ||| || ||| | || || |||||||| || ||||||||
Sbjct 108949 TCTCGAGAATGTGATCAGGGACGCTGTGACTTACACTGAGCACGCGCGTCGCAAGACTGT 108890
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| |||| ||||| | || | || ||| | | | ||||| |||||
Sbjct 108889 GACTGCCATGGATGTCGTGTATGCTCTCAAGAGGCAGGGCAGGACCTTGTATGGGTTTGG 108830
Query 16693 AAGTTA 16698
||||
Sbjct 108829 GGGTTA 108824
>seq1826
Length=69982
Score = 116 bits (128), Expect = 6e-22
Identities = 174/247 (70%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
||||| ||||||||||| || ||||| ||||| || ||||||||| ||||||| | ||
Sbjct 53727 TCTTCATGATAACATCCAGGGGATCACAAAGCCTGCGATCCGTCGTTTGGCTCGCAGGGG 53786
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|||||| ||| || ||| || | | | || |||| ||| | | ||||||||
Sbjct 53787 TGGAGTGAAGTGTATCTGCGGTCTAATTCACGAGGAGACATGTGGCATCCTCAAGATCTT 53846
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| ||| ||| ||||||||||| | ||| || ||||||| | | ||||| |
Sbjct 53847 TTTGGAGAACGTGATCCATGATGCCGTGACCTACACTGAGCACGAAAGGAGGAAGACCAT 53906
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| |||||||||| ||||| | ||||| | | | ||||| || ||
Sbjct 53907 GACGGCCATGGATGTCGTCTATGCCTTGAAGAGGCAAGGAAGGACTCTCTATGGGTTCGG 53966
Query 16693 AAGTTAA 16699
|||||
Sbjct 53967 TGGTTAA 53973
>seq936
Length=93997
Score = 87.8 bits (96), Expect = 3e-13
Identities = 165/243 (68%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||| || |||||||| |||||||| || || | |||| | | || ||||
Sbjct 62533 GAGATAACATTCAGGGAATCACAAAGCCAGCCATTCGGAGATTGGCGAGGAGAGGAGGAG 62474
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
||||| | || || | |||| ||||| | | | || | ||||||||| |
Sbjct 62473 TCAAGAGGATCAGCGGCCTCATCTACGAAGAAACCAGAGGAGTCCTCAAGATCTTCTTGG 62414
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | |||||| | || || |||||||||| | || ||||| |||
Sbjct 62413 AGAACGTGATTCGTGATGCCGTGACTTACACTGAGCACGCTAGGAGGAAAACTGTGACCG 62354
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | ||||| || | || | || || | | | ||||||||||| |||
Sbjct 62353 CCATGGATGTGGTCTACGCGCTCAAGAGGCAGGGAAGGACCCTGTATGGTTTTGGGGGTT 62294
Query 16698 AAT 16700
||
Sbjct 62293 GAT 62291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78953058642177
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