Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_006938.1 Length=63649 Score E Sequences producing significant alignments: (Bits) Value seq89734 158 5e-34 seq67250 154 6e-33 >seq89734 Length=855 Score = 158 bits (174), Expect = 5e-34 Identities = 158/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 7915 CTCCTGGTCGTTGACGAGTGTTCGATGGTCGACATGCAGGTCGGTCAAGACCTCCTCTCC 7974 ||| | ||| | |||||||| ||||||||||| | |||| || ||||| || || Sbjct 198 CTCATCGTCATCGACGAGTGCTCGATGGTCGATTCCGACCTCGGCCACGACCTGCTGTCG 257 Query 7975 TTCGACGTCCCCATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAGGT 8034 |||||| || | || ||||||||||||||||| ||||| ||||| || || || Sbjct 258 TTCGACAAGCCGGTGCTGGTGCTCGGCGACCCGGCGCAGCTGCCGCCGGTGCGCGGCGGC 317 Query 8035 GGCTTCTTCACGGAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCAAG 8094 ||||||||||| |||||| |||| ||| |||||||||| || ||||||||||||||||| Sbjct 318 GGCTTCTTCACCGAGGCCGAGCCCGACGTGATGCTGACCGAGGTCCACCGCCAGGCCAAG 377 Query 8095 GACAACCCCATCATCGAGATGGCGA 8119 ||| |||| ||| | ||||||| Sbjct 378 GACGACCCGATCGTGCGCATGGCGA 402 >seq67250 Length=1371 Score = 154 bits (170), Expect = 6e-33 Identities = 311/457 (68%), Gaps = 12/457 (3%) Strand=Plus/Minus Query 7927 GACGAGTGTTCGATGGTCGACATGCAGGTCGGTCAAGACCTCCTCTCCTTCGACGTCCCC 7986 ||||| || |||||||| ||| | | |||| | |||||||| ||||||| | ||| Sbjct 685 GACGAATGCTCGATGGTGGACGAGGAACTCGGCCGCGACCTCCTGTCCTTCGGCAAGCCC 626 Query 7987 ATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAGGTGGCTTCTTCACG 8046 |||| ||||| |||||| | || ||||| |||||||| | ||| || ||||||||||| Sbjct 625 GTCCTGGTGCTGGGCGACACCGCGCAGCTGCCGCCCGTGAAGGGCGGCGGCTTCTTCACC 566 Query 8047 GAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCAAGGACAACCCCATC 8106 || ||| |||| ||| |||||||||| || | || |||||||| ||||| |||||| Sbjct 565 GACGCCGAGCCCGACGTGATGCTGACCGAGGTGCATCGCCAGGCGGCCGACAATCCCATC 506 Query 8107 ATCGAGATGGCGACCCGCGTCCGCGAGGACAGAGGTCTGCCCCTGGGCTCCTATGGAGAC 8166 ||| ||| ||| || ||||||| | | |||| || ||| ||||||| || Sbjct 505 ATCCGCATGTCGATGACGGTGCGCGAGGGTGGCCGGCTGCAGCTCGGCGCCTATGGCGAG 446 Query 8167 TCGGCCGTGCACCGATTTGGGACGCCAATGGAGGACATCGCACGT----CGAGCCGACCA 8222 | |||| ||| || | || |||| | ||| ||| | ||||||| Sbjct 445 AGCGGGGTGCTCCGCCGTG---CCGAGATCGAGG-CGCCGCGCGTGATGCAGTCCGACCA 390 Query 8223 GCTTATATGCGGCCGCAACAAGACGCGTCGAGCGGCGAATAAGAGGATCCGCCAGTTCAA 8282 | | | |||| ||||||||| || || || || | || ||| | | Sbjct 389 GGTGCTGGTCGGCATCAACAAGACCCGGCGCGCCTACAACGGCCGCATGCGCACGCTGCT 330 Query 8283 GGGC--TTCGAGGGAGACCTCCCGGTGGTCGGCGACCGGCTCGTCTGCCTGTCCAATGAC 8340 |||| ||| || ||| |||| | ||||||| |||||| |||||| ||| ||| Sbjct 329 GGGCCATTC--CGGCGACAAGCCGGAGATCGGCGAGAAGCTCGTGTGCCTGCGCAACGAC 272 Query 8341 CACGAGGAGGGCCTGCTCAACGGCCAGATCTGGATCG 8377 | || ||||||||||||||||| | |||||||| Sbjct 271 AAGAAGAAGGGCCTGCTCAACGGCGGCACCTGGATCG 235 Score = 95.1 bits (104), Expect = 5e-15 Identities = 160/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 7481 CCCAACAGAACACGGCCCTGA--GCCGGGTCGACGAGTGGCTGGCATCCGGCCACTCCCC 7538 |||| ||| || |||| |||| |||| |||| | |||||| | || || || Sbjct 999 CCCAGCAGGACGCGGCGCTGAAAGCCGTGTCGGCC--TGGCTGAAGGCGGGGGACCGGCC 942 Query 7539 CATATTCCGGCTCTTCGGCTACGCGGGGACGGGCAAGACCACGCTGGCCAAGCACCTGGC 7598 | ||||| || |||||||| || || || ||||||||||||||||| ||||| | || Sbjct 941 GGTCTTCCGCCTGTTCGGCTATGCCGGCACCGGCAAGACCACGCTGGCGAAGCAGATCGC 882 Query 7599 CGAGGGCGTCTCGGGCCGAGTGAAGTTCGCCGCGTACACTGGCAAGGCGGCCCAGGTCCT 7658 ||||| || ||||| || |||| || ||||| |||||||| |||| ||| || Sbjct 881 CGAGGACGCGCCGGGCGAGGTCGCCTTCGGGGCCTACACGGGCAAGGCCGCCCTGGTGCT 822 Query 7659 CAGCGAGAAGGGCTGCCCG---GCCACCACAATACACAAGCTGATCTAC 7704 | |||||||||| | ||| |||| || || | |||||||| Sbjct 821 GAAGTCCAAGGGCTGCCGGGGCGCCTCCACCATCCATTCGATGATCTAC 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203220593744690