Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq78534 167 3e-36 seq57685 127 3e-24 seq11270 125 9e-24 seq588 84.2 3e-11 >seq78534 Length=1057 Score = 167 bits (184), Expect = 3e-36 Identities = 386/573 (67%), Gaps = 14/573 (2%) Strand=Plus/Minus Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 ||||| || ||||| ||||| || || |||| | | | | ||| | || || || ||| Sbjct 654 ACAGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGTG 595 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || || || ||||||| ||||| | || | ||| || ||||| ||| || ||| Sbjct 594 CAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCA 535 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074 || || || || ||||||||| | ||||| ||| |||||| || || || || | ||| Sbjct 534 TCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCAC 475 Query 63075 ACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCT--CTT-TCGTATAGTGTATA 63130 | | || ||||||| ||| | | | | | || || ||| || ||| || | Sbjct 474 A-GTTTCTGAGCCTTAATTGTC---TGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGAA 419 Query 63131 CAATCGTTCGAACTCGTCTCCCCAAACATTGTC---CAATCCAGGACATTCATCCGGACA 63187 ||| ||||| ||||| || | || ||| ||| ||||||||||||| ||||| Sbjct 418 CAAGGCCTCGAATTCGTCGCCGTAG-CA--GTCAGACAAACCAGGACATTCATTGGGACA 362 Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 ||||| | ||| ||| | | | | ||||| ||||| || || ||||||||||| || Sbjct 361 CATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAG 302 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 ||| || |||||||||| ||| ||| || || || |||||| | | | ||| Sbjct 301 AGCGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAG 242 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 || | | | ||||| ||||| || || | ||| ||||| | | || || | || Sbjct 241 CCACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTT 182 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 ||| || || ||||| | ||| | ||| ||||| | | | |||| || ||| || | | Sbjct 181 GTTGCCGCCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAG 122 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATA 63460 |||||| || | || || ||||| | ||| || Sbjct 121 ACCGTTCGAAGTGCCGTTTGTACCCGCGATGTA 89 >seq57685 Length=1792 Score = 127 bits (140), Expect = 3e-24 Identities = 380/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | ||| ||||||| || ||| ||||| | | || || || ||||| Sbjct 1216 CCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCATTCTGCTCGACACGCTTCATG 1275 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 || ||||| |||||||| || || ||| || || || | | | ||||| || || Sbjct 1276 AAAAGATCGGGAATCCAGAGTGC-ATAGAAGAGGTCACGAGCACGGACCTCCTCCTTGCC 1334 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 ||||| |||||| ||||| || | | ||||| ||||| || || | ||| || Sbjct 1335 GTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTACAT 1394 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 ||| | | || || || ||||| || || || || | || | ||| || || || | Sbjct 1395 GGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACATAACGAGCAGTATTGTTGAA 1454 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 || | | |||||| | | ||| || ||| | |||||||| ||| || || || Sbjct 1455 GACACGAAGCATTGGTACCAGACCATTGGATGTGCCATTGGTGCCGCCAATGTACGAACC 1514 Query 63467 ACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524 | | ||||| || || |||| || || || || || | || ||||| | | Sbjct 1515 AGTCGCACGGATGCGGTGAACGTTGAAC--CCGATGCCGCCAGCATTCTTCGAGATCATT 1572 Query 63525 GCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGA 63584 ||||| || | || || ||||||||||| ||||| || || | | || | || Sbjct 1573 GCGCAGGTCTTGAGTGTATCGTAGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGG 1632 Query 63585 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644 || ||| | || || | ||| || ||| | || | || || ||||||||| Sbjct 1633 AAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGCACTGAAGAGTGTCGGCGAAGCGTGC 1692 Query 63645 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703 || || | || | || | |||| ||||| ||||| || || | || |||||| Sbjct 1693 GTGAAGTACTTGTTTGACATGTAG-TTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCC 1751 Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63742 |||||| || || ||||||||||| | ||| |||||||| Sbjct 1752 ATGAATGCCAACGGCGACACGCATGATCATCTGCTGAGG 1790 >seq11270 Length=18388 Score = 125 bits (138), Expect = 9e-24 Identities = 381/581 (66%), Gaps = 12/581 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||||||||| || || ||||||| || | |||||||| || || | Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||||| || |||||||| ||||||||||| | ||| || || ||||| Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTACCGGAGAAGAAA 5607 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCAT 33478 || ||||| || ||| || || || || || ||||| | ||| | ||| ||| Sbjct 5608 ATGCCTTCGAC-GCAGGCGAAAGCGATGAGCCTCTCGGC-GAACGATTCTCCGCCGTC-- 5663 Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 |||||| | ||||| ||||||||||| || ||||| | || || || || | Sbjct 5664 -GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGT 5722 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 || || ||| || || || || | ||| || |||| ||| ||||| |||| Sbjct 5723 GGAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACA 5782 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 |||| || || || || || || || ||||| || || |||||| | |||||| | || Sbjct 5783 TTTCAGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAA 5842 Query 33659 TCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 || || || | || | | |||| |||| ||| || || || ||||| ||| Sbjct 5843 CTTGGACCTC-CTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCG 5901 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33777 || || || || | || || | | || | | ||| | ||||| || | ||| Sbjct 5902 GCGAAGAAGGCGAGCACGTGAGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAG 5961 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 | | | || || | ||| || || || | ||||| || || ||||| ||||| Sbjct 5962 TGACGTAAGTCGCCGGAGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTC 6021 Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || ||||| | |||||| || || || || ||||| || Sbjct 6022 TTGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 6062 >seq588 Length=109198 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | || |||||||| || || ||||| | ||| | | || | Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||| |||| || ||||| | ||| |||||||| || | || | |||||| Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| ||||| || | ||| | | ||||| | ||| || | || | Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| |||||||| || | || |||||||| || || || || Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621906963831240