Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq78534 167 3e-36
seq57685 127 3e-24
seq11270 125 9e-24
seq588 84.2 3e-11
>seq78534
Length=1057
Score = 167 bits (184), Expect = 3e-36
Identities = 386/573 (67%), Gaps = 14/573 (2%)
Strand=Plus/Minus
Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954
||||| || ||||| ||||| || || |||| | | | | ||| | || || || |||
Sbjct 654 ACAGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGTG 595
Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014
|| || || ||||||| ||||| | || | ||| || ||||| ||| || |||
Sbjct 594 CAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCA 535
Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074
|| || || || ||||||||| | ||||| ||| |||||| || || || || | |||
Sbjct 534 TCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCAC 475
Query 63075 ACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCT--CTT-TCGTATAGTGTATA 63130
| | || ||||||| ||| | | | | | || || ||| || ||| || |
Sbjct 474 A-GTTTCTGAGCCTTAATTGTC---TGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGAA 419
Query 63131 CAATCGTTCGAACTCGTCTCCCCAAACATTGTC---CAATCCAGGACATTCATCCGGACA 63187
||| ||||| ||||| || | || ||| ||| ||||||||||||| |||||
Sbjct 418 CAAGGCCTCGAATTCGTCGCCGTAG-CA--GTCAGACAAACCAGGACATTCATTGGGACA 362
Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247
||||| | ||| ||| | | | | ||||| ||||| || || ||||||||||| ||
Sbjct 361 CATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAG 302
Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307
||| || |||||||||| ||| ||| || || || |||||| | | | |||
Sbjct 301 AGCGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAG 242
Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367
|| | | | ||||| ||||| || || | ||| ||||| | | || || | ||
Sbjct 241 CCACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTT 182
Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427
||| || || ||||| | ||| | ||| ||||| | | | |||| || ||| || | |
Sbjct 181 GTTGCCGCCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAG 122
Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATA 63460
|||||| || | || || ||||| | ||| ||
Sbjct 121 ACCGTTCGAAGTGCCGTTTGTACCCGCGATGTA 89
>seq57685
Length=1792
Score = 127 bits (140), Expect = 3e-24
Identities = 380/579 (66%), Gaps = 8/579 (1%)
Strand=Plus/Plus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
||||| || || | ||| ||||||| || ||| ||||| | | || || || |||||
Sbjct 1216 CCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCATTCTGCTCGACACGCTTCATG 1275
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286
|| ||||| |||||||| || || ||| || || || | | | ||||| || ||
Sbjct 1276 AAAAGATCGGGAATCCAGAGTGC-ATAGAAGAGGTCACGAGCACGGACCTCCTCCTTGCC 1334
Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346
||||| |||||| ||||| || | | ||||| ||||| || || | ||| ||
Sbjct 1335 GTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTACAT 1394
Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406
||| | | || || || ||||| || || || || | || | ||| || || || |
Sbjct 1395 GGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACATAACGAGCAGTATTGTTGAA 1454
Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466
|| | | |||||| | | ||| || ||| | |||||||| ||| || || ||
Sbjct 1455 GACACGAAGCATTGGTACCAGACCATTGGATGTGCCATTGGTGCCGCCAATGTACGAACC 1514
Query 63467 ACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524
| | ||||| || || |||| || || || || || | || ||||| | |
Sbjct 1515 AGTCGCACGGATGCGGTGAACGTTGAAC--CCGATGCCGCCAGCATTCTTCGAGATCATT 1572
Query 63525 GCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGA 63584
||||| || | || || ||||||||||| ||||| || || | | || | ||
Sbjct 1573 GCGCAGGTCTTGAGTGTATCGTAGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGG 1632
Query 63585 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644
|| ||| | || || | ||| || ||| | || | || || |||||||||
Sbjct 1633 AAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGCACTGAAGAGTGTCGGCGAAGCGTGC 1692
Query 63645 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703
|| || | || | || | |||| ||||| ||||| || || | || ||||||
Sbjct 1693 GTGAAGTACTTGTTTGACATGTAG-TTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCC 1751
Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63742
|||||| || || ||||||||||| | ||| ||||||||
Sbjct 1752 ATGAATGCCAACGGCGACACGCATGATCATCTGCTGAGG 1790
>seq11270
Length=18388
Score = 125 bits (138), Expect = 9e-24
Identities = 381/581 (66%), Gaps = 12/581 (2%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| |||||||||||||| || || ||||||| || | |||||||| || || |
Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|||||||||| || |||||||| ||||||||||| | ||| || || |||||
Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTACCGGAGAAGAAA 5607
Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCAT 33478
|| ||||| || ||| || || || || || ||||| | ||| | ||| |||
Sbjct 5608 ATGCCTTCGAC-GCAGGCGAAAGCGATGAGCCTCTCGGC-GAACGATTCTCCGCCGTC-- 5663
Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538
|||||| | ||||| ||||||||||| || ||||| | || || || || |
Sbjct 5664 -GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGT 5722
Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598
|| || ||| || || || || | ||| || |||| ||| ||||| ||||
Sbjct 5723 GGAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACA 5782
Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658
|||| || || || || || || || ||||| || || |||||| | |||||| | ||
Sbjct 5783 TTTCAGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAA 5842
Query 33659 TCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717
|| || || | || | | |||| |||| ||| || || || ||||| |||
Sbjct 5843 CTTGGACCTC-CTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCG 5901
Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33777
|| || || || | || || | | || | | ||| | ||||| || | |||
Sbjct 5902 GCGAAGAAGGCGAGCACGTGAGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAG 5961
Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837
| | | || || | ||| || || || | ||||| || || ||||| |||||
Sbjct 5962 TGACGTAAGTCGCCGGAGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTC 6021
Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878
|| ||||| | |||||| || || || || ||||| ||
Sbjct 6022 TTGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 6062
>seq588
Length=109198
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671
|| || ||||| || | || |||||||| || || ||||| | ||| | | || |
Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881
Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730
|| || | ||| |||| || ||||| | ||| |||||||| || | || | ||||||
Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822
Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790
|||||||||||| ||||| || | ||| | | ||||| | ||| || | || |
Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762
Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838
||||| |||||||| || | || |||||||| || || || ||
Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621906963831240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |