Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq57685 457 2e-123 seq78534 196 1e-44 seq3602 102 2e-16 seq11270 87.8 5e-12 seq588 87.8 5e-12 >seq57685 Length=1792 Score = 457 bits (506), Expect = 2e-123 Identities = 1153/1726 (67%), Gaps = 40/1726 (2%) Strand=Plus/Minus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||| | |||||||| || |||| || ||| || |||| | || || || Sbjct 1790 CCTCAGCAGATGATCATGCGTGTCGCCGTTGGCATTCATGGCGAGGATATCGAGGCTGCC 1731 Query 363514 ATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAATGT 363571 || || || || || || | | || | ||| ||||||||||| |||| ||| | | Sbjct 1730 ATCGAGACCTACAA-CTAC-ATGTCAAACAAGTACTTCACGCACGCTTCGCCGACACTCT 1673 Query 363572 ACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACG 363631 || |||||| |||| || |||||| || | || ||||| || | | | ||||| | Sbjct 1672 TCAGTGCTGGTACTCCCAACCCACAGCTGGCCTCCTGCTTCCTCATCGACGTCAAGGAGG 1613 Query 363632 ATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAG 363691 | |||||||||||||| || ||||| |||| || || | || || |||||||| | Sbjct 1612 ACAGCATCGAGGGTATCTACGATACACTCAAGACCTGCGCAATGATCTCGAAGAATGCTG 1553 Query 363692 GCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCAC 363749 |||| || || | | || || || | ||||| || | || ||||| ||||||| Sbjct 1552 GCGGCATCGGGTTCAACGTTC-ACCGCATCCGTGCGACTGGTTCGT-ACATTGGCGGCAC 1495 Query 363750 -AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGT 363808 | || | | || ||||| ||||| || ||||||||||| || |||||||||| | | Sbjct 1494 CAATGGCACA-TCCAATGGTCTGGTACCAATGCTTCGTGTCTTCAACAATACTGCTCGTT 1436 Query 363809 ACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATC 363868 | |||||||| ||||| ||||| || || ||||| ||||| |||||||| | Sbjct 1435 ATGTCGACCAAGGTGGCAACAAGCGTCCCGGCGCCTTTGCCATGTACCTCGAGCCATGGC 1376 Query 363869 ATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTG 363928 | || ||| | || | || || || || || || ||| || || ||||| | |||| Sbjct 1375 ACGCTGATGTCTTCGCCTTCCTGGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTG 1316 Query 363929 CACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAG 363988 | ||||| || ||||||||||| ||| || | || | ||| |||||||| || || |||| Sbjct 1315 CTCGTGACCTCTTCTATGCACTCTGGATTCCCGATCTTTTCATGAAGCGTGTCGA-GCAG 1257 Query 363989 GTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGT 364047 || ||||| | || | ||||| |||| || || |||||| | || || | || Sbjct 1256 AATGGAGATTGGACGCTGATGTGCCCGAACGAGTGCCCTGGTCTTGCTGACGTCTATGGC 1197 Query 364048 GACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATT 364107 || || | | ||||| ||| | ||||| || |||||| | |||| |||| || Sbjct 1196 GATGAGTTCGAGGCTCTCTACAACAAGTACGAGAAGGAGGGTCGTGGTCGTGAGACCGTT 1137 Query 364108 CCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT 364167 | ||||||||||||||||| |||||| | || | |||| ||||| || | || | Sbjct 1136 CGCGCACAGAAGCTATGGTACGCCATCCTCGAGGCTCAGACAGAGACTGGCAATCCTTTC 1077 Query 364168 ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227 ||| | ||||||||| | ||||||||||| ||| ||| || |||| ||| |||| | Sbjct 1076 ATGCTCTACAAAGATGCTTGCAACCGCAAAAGCAATCAGAAGAACCTCGGTGTCATTC-G 1018 Query 364228 CAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATG 364286 ||| ||| || || || ||||| ||||| || || ||||| || ||| ||| || || Sbjct 1017 CAGCTCCAATCTCTGCACAGAGATCATTGAGTATACTGCTCCTGATGAGGTTGCTGTTTG 958 Query 364287 TAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--AAAAG----ATGGTACTTTTGACCA 364340 ||| | || || | || ||||| | | ||| | | | | | |||| ||| Sbjct 957 CAACTTGGCTTCTCTGGCACTTCCTACCTATGTCGACATGGCCAACGAGTCTTTCGACTT 898 Query 364341 CCAGCATCTTTATGACGTAACCTATCATG-CTACTT--GCAATCTCGACAAGGTTATCGA 364397 ||| | || |||| || | ||| | | | | || || ||||| | ||| | Sbjct 897 CCAAAAGCTCCATGAAGT---CGTTCAGGTCGTCGTCAAGAACCTGAACAAGATCATCAA 841 Query 364398 CAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCCCGATTG 364456 || ||| | |||||| | ||||| || || | || ||||||||||| ||||| || | Sbjct 840 CATCAATCACTATCCAGTGCCTGAGGCTCGCAAG-TCCAATATGCGTCACCGCCCTATCG 782 Query 364457 GTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGC 364516 |||||||||| || || ||||| || | || || || ||| |||| || || | Sbjct 781 GTCTTGGTGTGCAAGGTCTCGCGGATGCATTCTTGGCTCTGCGCATGCCATTCGACTCTC 722 Query 364517 CTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTG 364576 | || |||||| || || | ||||||| || || || || || || | |||| Sbjct 721 CAGAGGCTCGTCAACTCAACATCCAGATCTTCGAGACCATCTACCACGCTGCTCTCACTG 662 Query 364577 CTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTT 364636 | ||||| |||||||| ||| || ||| || || ||||| || ||| ||| Sbjct 661 CCTCGTGCGATTTGGCCAAAGAACTTGGTCCTTACGAGACCTACGAGGGCTCTCCTGTTT 602 Query 364637 CGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGG 364696 |||| || | | || | || | ||| ||| || || ||| || ||| ||||| Sbjct 601 CGCAAGGCGAGCTTCAATACGACATGTGGGGTGTGACTCCCACTGACCTCTGGGACTGG- 543 Query 364697 ATACGCTACGTTCCAACGTTAAGA------AGCATGGTACTCGCAACTCCCTCGTTACAG 364750 |||| | ||| | ||||| | || || || || || || || | Sbjct 542 -AACGC----TCTCAAGGCTAAGATCGCTGACCACGGCGTCCGAAATTCTCTTCTTGTCG 488 Query 364751 CGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGT 364810 | || ||||| || || || || | |||||| | || ||||||||||||||| || | Sbjct 487 CACCTATGCCGACTGCCTCGACATCGCAGATCATGGGCTTCAACGAGTGCTTCGAGCCAT 428 Query 364811 TTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGT 364870 || ||| |||| || || || || | |||| || || | ||| || || | Sbjct 427 ACACTTCCAACATTTACTCTCGTCGTGTCTTGGCCGGCGAGTTCCAGGTCGTCAACCCTT 368 Query 364871 ACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCA 364930 || |||||||||| || || || || ||| ||||| ||||||||| |||| Sbjct 367 GGCTTCTCAAGGATCTCGTTGATCGTGGTCTCTGGTCTGACAACATGAAGAATCGCATCA 308 Query 364931 TCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTT 364990 |||||| | || || | ||| ||| || |||| || || || ||| || | | Sbjct 307 TCGCCGACAGCGGATCCATTCAGCGCATCCCTAACATTCCCGATGACCTCAAGGCTCTCT 248 Query 364991 ACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTG 365050 |||| || || ||||| || | |||| || || | ||||| |||||||| |||| Sbjct 247 ACAAGACTGTCTGGGAGATCAGCCAGCGACAAATCGTTCAGATGGCTGCCGATCGTGGTG 188 Query 365051 CTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGC 365110 | |||||| ||| |||||| | ||| | ||||| |||| ||| | |||| Sbjct 187 CCTTTATCGATCAATCTCAGTCGCTCAACATTCACATGAAGGAGCCGACCATGGGCAAGA 128 Query 365111 TTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | || || ||||||||| || |||||| ||| || ||||| || Sbjct 127 TCACTTCAATGCATTTCGCTGGTTGGAAACTCGGACTCAAGACTGG 82 >seq78534 Length=1057 Score = 196 bits (216), Expect = 1e-44 Identities = 456/681 (67%), Gaps = 19/681 (3%) Strand=Plus/Plus Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711 ||||| || |||| |||||| | ||||||||||| || |||||||||||| | | Sbjct 4 GACACTCTCAAGACATGTGCTATGATTTCCAAGAACGCTGGCGGAATTGGTTTGAATGTG 63 Query 363712 CAC-AATGTTCGTGC-ACAGAA-CAGTTACATTCGCGGC-ACAGGGGGATACTCGAATGG 363767 ||| || || | || |||| || ||||| ||||| ||| || ||||| || Sbjct 64 CACCAAAATTAGAGCCACAGGTTCA--TACAT-CGCGGGTACAAACGGCACTTCGAACGG 120 Query 363768 GCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGG 363827 ||| || ||||| || || |||||||| ||||| |||||||||| || || || Sbjct 121 TCTGACGCCTATGCTGCGAGTCTTTGACAACACTGCTCGGTACGTCGATCAAGGCGGCAA 180 Query 363828 AAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTT 363887 ||| | ||| || || || || || || ||||| || || ||| | || |||| Sbjct 181 CAAGAGACCAGGTGCCTTCGCCATTTACCTTGAGCCATGGCACGCTGATGTATTCGAGTG 240 Query 363888 TCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGC 363947 || | | | || ||| || ||||| ||| | | || | ||||| ||||| || Sbjct 241 GCTCAACTTGAGAAAGAACCACGGCAAAGAAGAAGTCAGAGCCAGAGATCTCTTCTACGC 300 Query 363948 ACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT------TGGTC 364001 || ||| || |||||| || |||||||| || || |||||| ||| | Sbjct 301 TCTCTGGATTCCTGACCTATTCATGAAGCGAGTAGAA------AAGAATGCAGACTGGAC 354 Query 364002 ACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGC 364061 ||| | || || | |||||||| ||| | || || | || ||||| | | || Sbjct 355 ACTGATGTGTCCCAATGAATGTCCTGGTTTGTCTGACTGCTACGGCGACGAATTCGAGGC 414 Query 364062 TCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCT 364121 | | | || ||||| || ||||||| || |||||||| || ||||| || Sbjct 415 CTTGTTCACCAAATATGAGAAGGCAGGAAAGGGCCGCCAGACAATTAAGGCTCAGAAACT 474 Query 364122 ATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGA 364181 |||| ||||||||| || | |||| |||||| || | || | ||| |||||||||| Sbjct 475 GTGGTATGCCATCATTGAGGCTCAGACTGAGACTGGCAATCCATTCATGCTGTACAAAGA 534 Query 364182 TTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATG 364241 | | |||||||||||| |||||| || |||| || || || || |||||| || Sbjct 535 TGCCTGCAACCGCAAGAGCAACCAAAAGAACCTGGGAACGATCAAGTCATCCAACCTCTG 594 Query 364242 TACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGAT 364301 ||||| || ||||| || || ||||| || || || || || || || ||||| | Sbjct 595 CACCGAAATCATTGAGTATACTGCTCCAGATGAAGTCGCAGTTTGCAATCTCGCGTCTGT 654 Query 364302 CGCGCTTCCGGCGTTTGTAAA 364322 | | || || || ||||| || Sbjct 655 CTCACTGCCAGCATTTGTCAA 675 >seq3602 Length=49096 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | ||| ||| || || |||||||||||||| |||||||||| Sbjct 5906 CAGTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGGTCTGCTGATACA 5965 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 |||||||||||||| |||||| ||||| ||| ||| || | || || | || ||||| Sbjct 5966 GGTCTTGGTGTTCCATTTAATGTTGCATCTTATGCATTATTGACGTGTATGATTGCTCA 6024 >seq11270 Length=18388 Score = 87.8 bits (96), Expect = 5e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 || |||||||| |||||||| || ||||| | |||||||||||||||||||||| || Sbjct 5276 AACCCATTTGATTGGATGGAGCTGATTTCGTTGCAAGGAAAGACCAATTTCTTCGAGAAG 5217 Query 22918 AGAGTTGGTGAATACCAAAAAGC 22940 |||||||| || ||||| || || Sbjct 5216 AGAGTTGGGGAGTACCAGAAGGC 5194 >seq588 Length=109198 Score = 87.8 bits (96), Expect = 5e-12 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || ||| || || || || | ||| || | || | Sbjct 13044 TTGCTTCCTTGTGTGCATGAAAGATGATAGTATTGAAGGCATATATGAGACTTTAAAAGA 13103 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | ||| ||| ||| || ||||||||||| || | |||||| ||||||| Sbjct 13104 GTGTGCTATCATTAGCAAATCTGCTGGAGGAATTGGTGTCTCAGTTCACAATATTCGTGC 13163 Query 363726 -ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 |||| |||||| ||||| || || | |||| | || ||||| | ||||| ||||| Sbjct 13164 TACAG-GCAGTTATATTCGTGGAACAAATGGGACA-TCTAATGGCATTGTTCCAATGCTA 13221 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || || || | ||||||| | || || || || || || || ||| | ||||| Sbjct 13222 CGGGTATTCAATGATACTGCACGATATGTTGATCAAGGGGGTGGCAAGAGGAAAGG 13277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301122768166598