Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq57685 457 2e-123
seq78534 196 1e-44
seq3602 102 2e-16
seq11270 87.8 5e-12
seq588 87.8 5e-12
>seq57685
Length=1792
Score = 457 bits (506), Expect = 2e-123
Identities = 1153/1726 (67%), Gaps = 40/1726 (2%)
Strand=Plus/Minus
Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513
|| ||||| ||| | |||||||| || |||| || ||| || |||| | || || ||
Sbjct 1790 CCTCAGCAGATGATCATGCGTGTCGCCGTTGGCATTCATGGCGAGGATATCGAGGCTGCC 1731
Query 363514 ATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAATGT 363571
|| || || || || || | | || | ||| ||||||||||| |||| ||| | |
Sbjct 1730 ATCGAGACCTACAA-CTAC-ATGTCAAACAAGTACTTCACGCACGCTTCGCCGACACTCT 1673
Query 363572 ACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACG 363631
|| |||||| |||| || |||||| || | || ||||| || | | | ||||| |
Sbjct 1672 TCAGTGCTGGTACTCCCAACCCACAGCTGGCCTCCTGCTTCCTCATCGACGTCAAGGAGG 1613
Query 363632 ATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAG 363691
| |||||||||||||| || ||||| |||| || || | || || |||||||| |
Sbjct 1612 ACAGCATCGAGGGTATCTACGATACACTCAAGACCTGCGCAATGATCTCGAAGAATGCTG 1553
Query 363692 GCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCAC 363749
|||| || || | | || || || | ||||| || | || ||||| |||||||
Sbjct 1552 GCGGCATCGGGTTCAACGTTC-ACCGCATCCGTGCGACTGGTTCGT-ACATTGGCGGCAC 1495
Query 363750 -AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGT 363808
| || | | || ||||| ||||| || ||||||||||| || |||||||||| | |
Sbjct 1494 CAATGGCACA-TCCAATGGTCTGGTACCAATGCTTCGTGTCTTCAACAATACTGCTCGTT 1436
Query 363809 ACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATC 363868
| |||||||| ||||| ||||| || || ||||| ||||| |||||||| |
Sbjct 1435 ATGTCGACCAAGGTGGCAACAAGCGTCCCGGCGCCTTTGCCATGTACCTCGAGCCATGGC 1376
Query 363869 ATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTG 363928
| || ||| | || | || || || || || || ||| || || ||||| | ||||
Sbjct 1375 ACGCTGATGTCTTCGCCTTCCTGGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTG 1316
Query 363929 CACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAG 363988
| ||||| || ||||||||||| ||| || | || | ||| |||||||| || || ||||
Sbjct 1315 CTCGTGACCTCTTCTATGCACTCTGGATTCCCGATCTTTTCATGAAGCGTGTCGA-GCAG 1257
Query 363989 GTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGT 364047
|| ||||| | || | ||||| |||| || || |||||| | || || | ||
Sbjct 1256 AATGGAGATTGGACGCTGATGTGCCCGAACGAGTGCCCTGGTCTTGCTGACGTCTATGGC 1197
Query 364048 GACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATT 364107
|| || | | ||||| ||| | ||||| || |||||| | |||| |||| ||
Sbjct 1196 GATGAGTTCGAGGCTCTCTACAACAAGTACGAGAAGGAGGGTCGTGGTCGTGAGACCGTT 1137
Query 364108 CCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT 364167
| ||||||||||||||||| |||||| | || | |||| ||||| || | || |
Sbjct 1136 CGCGCACAGAAGCTATGGTACGCCATCCTCGAGGCTCAGACAGAGACTGGCAATCCTTTC 1077
Query 364168 ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227
||| | ||||||||| | ||||||||||| ||| ||| || |||| ||| |||| |
Sbjct 1076 ATGCTCTACAAAGATGCTTGCAACCGCAAAAGCAATCAGAAGAACCTCGGTGTCATTC-G 1018
Query 364228 CAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATG 364286
||| ||| || || || ||||| ||||| || || ||||| || ||| ||| || ||
Sbjct 1017 CAGCTCCAATCTCTGCACAGAGATCATTGAGTATACTGCTCCTGATGAGGTTGCTGTTTG 958
Query 364287 TAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--AAAAG----ATGGTACTTTTGACCA 364340
||| | || || | || ||||| | | ||| | | | | | |||| |||
Sbjct 957 CAACTTGGCTTCTCTGGCACTTCCTACCTATGTCGACATGGCCAACGAGTCTTTCGACTT 898
Query 364341 CCAGCATCTTTATGACGTAACCTATCATG-CTACTT--GCAATCTCGACAAGGTTATCGA 364397
||| | || |||| || | ||| | | | | || || ||||| | ||| |
Sbjct 897 CCAAAAGCTCCATGAAGT---CGTTCAGGTCGTCGTCAAGAACCTGAACAAGATCATCAA 841
Query 364398 CAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCCCGATTG 364456
|| ||| | |||||| | ||||| || || | || ||||||||||| ||||| || |
Sbjct 840 CATCAATCACTATCCAGTGCCTGAGGCTCGCAAG-TCCAATATGCGTCACCGCCCTATCG 782
Query 364457 GTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGC 364516
|||||||||| || || ||||| || | || || || ||| |||| || || |
Sbjct 781 GTCTTGGTGTGCAAGGTCTCGCGGATGCATTCTTGGCTCTGCGCATGCCATTCGACTCTC 722
Query 364517 CTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTG 364576
| || |||||| || || | ||||||| || || || || || || | ||||
Sbjct 721 CAGAGGCTCGTCAACTCAACATCCAGATCTTCGAGACCATCTACCACGCTGCTCTCACTG 662
Query 364577 CTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTT 364636
| ||||| |||||||| ||| || ||| || || ||||| || ||| |||
Sbjct 661 CCTCGTGCGATTTGGCCAAAGAACTTGGTCCTTACGAGACCTACGAGGGCTCTCCTGTTT 602
Query 364637 CGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGG 364696
|||| || | | || | || | ||| ||| || || ||| || ||| |||||
Sbjct 601 CGCAAGGCGAGCTTCAATACGACATGTGGGGTGTGACTCCCACTGACCTCTGGGACTGG- 543
Query 364697 ATACGCTACGTTCCAACGTTAAGA------AGCATGGTACTCGCAACTCCCTCGTTACAG 364750
|||| | ||| | ||||| | || || || || || || || |
Sbjct 542 -AACGC----TCTCAAGGCTAAGATCGCTGACCACGGCGTCCGAAATTCTCTTCTTGTCG 488
Query 364751 CGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGT 364810
| || ||||| || || || || | |||||| | || ||||||||||||||| || |
Sbjct 487 CACCTATGCCGACTGCCTCGACATCGCAGATCATGGGCTTCAACGAGTGCTTCGAGCCAT 428
Query 364811 TTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGT 364870
|| ||| |||| || || || || | |||| || || | ||| || || |
Sbjct 427 ACACTTCCAACATTTACTCTCGTCGTGTCTTGGCCGGCGAGTTCCAGGTCGTCAACCCTT 368
Query 364871 ACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCA 364930
|| |||||||||| || || || || ||| ||||| ||||||||| ||||
Sbjct 367 GGCTTCTCAAGGATCTCGTTGATCGTGGTCTCTGGTCTGACAACATGAAGAATCGCATCA 308
Query 364931 TCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTT 364990
|||||| | || || | ||| ||| || |||| || || || ||| || | |
Sbjct 307 TCGCCGACAGCGGATCCATTCAGCGCATCCCTAACATTCCCGATGACCTCAAGGCTCTCT 248
Query 364991 ACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTG 365050
|||| || || ||||| || | |||| || || | ||||| |||||||| ||||
Sbjct 247 ACAAGACTGTCTGGGAGATCAGCCAGCGACAAATCGTTCAGATGGCTGCCGATCGTGGTG 188
Query 365051 CTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGC 365110
| |||||| ||| |||||| | ||| | ||||| |||| ||| | ||||
Sbjct 187 CCTTTATCGATCAATCTCAGTCGCTCAACATTCACATGAAGGAGCCGACCATGGGCAAGA 128
Query 365111 TTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| || || ||||||||| || |||||| ||| || ||||| ||
Sbjct 127 TCACTTCAATGCATTTCGCTGGTTGGAAACTCGGACTCAAGACTGG 82
>seq78534
Length=1057
Score = 196 bits (216), Expect = 1e-44
Identities = 456/681 (67%), Gaps = 19/681 (3%)
Strand=Plus/Plus
Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711
||||| || |||| |||||| | ||||||||||| || |||||||||||| | |
Sbjct 4 GACACTCTCAAGACATGTGCTATGATTTCCAAGAACGCTGGCGGAATTGGTTTGAATGTG 63
Query 363712 CAC-AATGTTCGTGC-ACAGAA-CAGTTACATTCGCGGC-ACAGGGGGATACTCGAATGG 363767
||| || || | || |||| || ||||| ||||| ||| || ||||| ||
Sbjct 64 CACCAAAATTAGAGCCACAGGTTCA--TACAT-CGCGGGTACAAACGGCACTTCGAACGG 120
Query 363768 GCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGG 363827
||| || ||||| || || |||||||| ||||| |||||||||| || || ||
Sbjct 121 TCTGACGCCTATGCTGCGAGTCTTTGACAACACTGCTCGGTACGTCGATCAAGGCGGCAA 180
Query 363828 AAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTT 363887
||| | ||| || || || || || || ||||| || || ||| | || ||||
Sbjct 181 CAAGAGACCAGGTGCCTTCGCCATTTACCTTGAGCCATGGCACGCTGATGTATTCGAGTG 240
Query 363888 TCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGC 363947
|| | | | || ||| || ||||| ||| | | || | ||||| ||||| ||
Sbjct 241 GCTCAACTTGAGAAAGAACCACGGCAAAGAAGAAGTCAGAGCCAGAGATCTCTTCTACGC 300
Query 363948 ACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT------TGGTC 364001
|| ||| || |||||| || |||||||| || || |||||| ||| |
Sbjct 301 TCTCTGGATTCCTGACCTATTCATGAAGCGAGTAGAA------AAGAATGCAGACTGGAC 354
Query 364002 ACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGC 364061
||| | || || | |||||||| ||| | || || | || ||||| | | ||
Sbjct 355 ACTGATGTGTCCCAATGAATGTCCTGGTTTGTCTGACTGCTACGGCGACGAATTCGAGGC 414
Query 364062 TCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCT 364121
| | | || ||||| || ||||||| || |||||||| || ||||| ||
Sbjct 415 CTTGTTCACCAAATATGAGAAGGCAGGAAAGGGCCGCCAGACAATTAAGGCTCAGAAACT 474
Query 364122 ATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGA 364181
|||| ||||||||| || | |||| |||||| || | || | ||| ||||||||||
Sbjct 475 GTGGTATGCCATCATTGAGGCTCAGACTGAGACTGGCAATCCATTCATGCTGTACAAAGA 534
Query 364182 TTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATG 364241
| | |||||||||||| |||||| || |||| || || || || |||||| ||
Sbjct 535 TGCCTGCAACCGCAAGAGCAACCAAAAGAACCTGGGAACGATCAAGTCATCCAACCTCTG 594
Query 364242 TACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGAT 364301
||||| || ||||| || || ||||| || || || || || || || ||||| |
Sbjct 595 CACCGAAATCATTGAGTATACTGCTCCAGATGAAGTCGCAGTTTGCAATCTCGCGTCTGT 654
Query 364302 CGCGCTTCCGGCGTTTGTAAA 364322
| | || || || ||||| ||
Sbjct 655 CTCACTGCCAGCATTTGTCAA 675
>seq3602
Length=49096
Score = 102 bits (112), Expect = 2e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761
|||||||||||| | | ||| ||| || || |||||||||||||| ||||||||||
Sbjct 5906 CAGTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGGTCTGCTGATACA 5965
Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820
|||||||||||||| |||||| ||||| ||| ||| || | || || | || |||||
Sbjct 5966 GGTCTTGGTGTTCCATTTAATGTTGCATCTTATGCATTATTGACGTGTATGATTGCTCA 6024
>seq11270
Length=18388
Score = 87.8 bits (96), Expect = 5e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917
|| |||||||| |||||||| || ||||| | |||||||||||||||||||||| ||
Sbjct 5276 AACCCATTTGATTGGATGGAGCTGATTTCGTTGCAAGGAAAGACCAATTTCTTCGAGAAG 5217
Query 22918 AGAGTTGGTGAATACCAAAAAGC 22940
|||||||| || ||||| || ||
Sbjct 5216 AGAGTTGGGGAGTACCAGAAGGC 5194
>seq588
Length=109198
Score = 87.8 bits (96), Expect = 5e-12
Identities = 164/236 (69%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665
|||||| ||| | ||||| || ||| || || || || | ||| || | || |
Sbjct 13044 TTGCTTCCTTGTGTGCATGAAAGATGATAGTATTGAAGGCATATATGAGACTTTAAAAGA 13103
Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725
|||||| | ||| ||| ||| || ||||||||||| || | |||||| |||||||
Sbjct 13104 GTGTGCTATCATTAGCAAATCTGCTGGAGGAATTGGTGTCTCAGTTCACAATATTCGTGC 13163
Query 363726 -ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783
|||| |||||| ||||| || || | |||| | || ||||| | ||||| |||||
Sbjct 13164 TACAG-GCAGTTATATTCGTGGAACAAATGGGACA-TCTAATGGCATTGTTCCAATGCTA 13221
Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839
|| || || | ||||||| | || || || || || || || ||| | |||||
Sbjct 13222 CGGGTATTCAATGATACTGCACGATATGTTGATCAAGGGGGTGGCAAGAGGAAAGG 13277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1301122768166598
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |