Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq10846 120 3e-22 seq12926 100 2e-16 seq8957 98.7 9e-16 seq11477 96.9 3e-15 seq16751 93.3 4e-14 seq1750 91.5 1e-13 seq13269 87.8 2e-12 >seq10846 Length=19378 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || ||||||||| | ||||| | || || ||| | Sbjct 11503 AATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 11444 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | |||||| ||||| |||||||| || || || || || || Sbjct 11443 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 11384 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||||| ||||||| | |||||||| | ||||||| |||| | | ||| ||||| | Sbjct 11383 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACCTT-AGCTGATTACA 11325 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||| || || || | || || ||| | ||||| |||||||| Sbjct 11324 ACATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGGA 11275 >seq12926 Length=15191 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| |||||| | || ||| | || || ||| | Sbjct 526 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAGC 467 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||| || | ||||| ||||| ||||| |||||||| || || || Sbjct 466 TCCGACACCATAGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGAC 407 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| || || | || ||| || ||| | || || | | | | || ||||||| Sbjct 406 CAGCAGAGGCTCATCTTCGCCGGTAAACAATTGGAGGACGGTCGCACCCTCGCCGATTAT 347 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 |||||||| || ||||| || | ||||| ||||| || Sbjct 346 AACATTCAGAAGGAATCGACTCTGCATTTGGTGTTGAG 309 >seq8957 Length=24100 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||||||||| |||||||| | || || ||| | | Sbjct 15505 ATGCAGATCTTTGTGAAAACCCTAACTGGAAAAACGATTACCTTGGAGGTAGAGAGCTCC 15446 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| ||||| || || || || || || || Sbjct 15445 GACACGATTGATAATGTCAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCGGACCAG 15386 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| |||||| | || || | | | | | || ||||| ||| Sbjct 15385 CAGAGGCTAATCTTCGCCGGGAAGCAATTAGAGGACGGCCGCACCCTCGCTGATTACAAC 15326 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || ||||| Sbjct 15325 ATTCAGAAGGAGTCTAC 15309 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || |||| ||| | || || ||| | | Sbjct 15733 ATGCAGATCTTCGTCAAAACCCTGACCGGTAAGACGATCACCTTGGAGGTGGAGAGCTCC 15674 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| ||||| || || || || || Sbjct 15673 GACACCATCGATAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 15614 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || |||||||||| | || || | | | | | || |||||| || Sbjct 15613 CAGAGACTCATCTTCGCCGGCAAGCAATTGGAGGAAGGCCGTACCCTCGCCGATTACAAT 15554 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| || || | ||| | ||| Sbjct 15553 ATCCAGAAAGAGTCAACTCTCCATCTCGTG 15524 >seq11477 Length=17588 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| |||||| | || ||| | || || ||| | Sbjct 516 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAGC 457 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||| || | ||||| ||||| ||||| |||||||| || || || Sbjct 456 TCCGACACCATAGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGAC 397 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| || || | || ||| || || | || || | | | | || ||||||| Sbjct 396 CAGCAGAGGCTCATCTTCGCCGGAAAACAGTTAGAGGACGGTCGCACCCTCGCCGATTAT 337 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 |||||||| || ||||| || | ||||| ||||| || Sbjct 336 AACATTCAGAAGGAATCGACTCTGCATTTGGTGTTGAG 299 >seq16751 Length=10463 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || ||||| ||| | ||||| | ||||| ||| | Sbjct 6748 AATGCAAATTTTTGTGAAGACCTTGACTGGTAAAACCATTACTTTGGAAGTTGAGAGCTC 6689 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | |||||| || ||| ||||| || || || || || || || Sbjct 6688 CGACACCATCGATAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGACCA 6629 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | |||||||| || ||||||| | | | | ||| || || Sbjct 6628 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCCTAGCCGACTACAA 6569 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| ||||| || | || | ||| | || | ||||| ||| Sbjct 6568 TATCCAAAAGGAATCCACCCTCCACCTGGTGCTCCGACTTAGAGGTGGA 6520 >seq1750 Length=74028 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | ||||| || | ||||| | ||||| ||| | Sbjct 61782 ATGCAGATTTTCGTCAAGACACTCACTGGGAAGACCATTACTCTTGAAGTTGAGAGTTCC 61841 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || || ||| |||||||||||||| || || ||||| Sbjct 61842 GATACCATAGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 61901 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | || |||||||| || |||| | ||| | |||||||||| Sbjct 61902 CAGAGGTTGATTTTTGCTGGAAAGCAACTTGAGGATGGCCGAACTCTGGCCGATTATAAC 61961 Query 24171 ATTCAAAAAGAATCTACA 24188 ||||| || || |||||| Sbjct 61962 ATTCAGAAGGAGTCTACA 61979 >seq13269 Length=14915 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | || ||||| | ||||| | ||||| ||| Sbjct 13438 ATGCAGATTTTTGTCAAGACACTCACCGGAAAGACCATTACTCTTGAAGTTGAGAGTTCT 13497 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || || ||| ||||||||||| || || || ||||| Sbjct 13498 GATACAATAGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 13557 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| || || ||||| || || |||| | ||| | |||||| ||| Sbjct 13558 CAGAGGCTGATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAAC 13617 Query 24171 ATTCAAAAAGAATCTACA 24188 ||||| || ||||||||| Sbjct 13618 ATTCAGAAGGAATCTACA 13635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429236014346295