Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq86895 105 2e-18 >seq86895 Length=897 Score = 105 bits (116), Expect = 2e-18 Identities = 213/308 (69%), Gaps = 15/308 (5%) Strand=Plus/Minus Query 39263 CCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATCG 39322 ||||||||||||||||| || ||||||||||| ||||| ||||| || | ||||| ||| Sbjct 872 CCGCCGCCGACGCGCTTGGTGGTGTAGAACAGCACGTAGGGCTTGGCGGAATACGGGTCG 813 Query 39323 CGCAGCACGCGAACCCCGATGCGGTCGATGATCAGA--TACGTCTGCTGGAAGTCGCCGA 39380 |||||||| || | ||| ||||||| || |||| || | | |||| ||||||| Sbjct 812 CGCAGCACCCGCAGGCCGGTGCGGTC--CGACCAGAGGTAGCCCCGGCGGAAATCGCCGA 755 Query 39381 AGAGAATCGGCGTCGAG--TTC--GCCGCCACATCCGGCATGTCCGGCACCTCGGTAACC 39436 || | || |||| | | || || | || ||||| || |||| || ||| Sbjct 754 AGGCGAGCG----CGAGGCTGCCGGCGGCGATGTCGGGCATCGCCTCGGCCTCCGTCACC 699 Query 39437 GGATAGCCCGCCAGCGTC-GCCGG-CTGCCCCGCTACGTACGACGGTTGCCAGAGAT-AG 39493 || |||| ||| ||| || || | | ||| || || ||| ||||||||| || Sbjct 698 GGGAAGCCGAGCAGGGTCTGCAGGCCCGGTCCGAGGCGGTCGGCGGCAGCCAGAGATAAG 639 Query 39494 TTCCCTTGGCCGTCCTTCAGCTTCCGCACCTGACGCTGCGTGTTGCGGTTCATCGCGAAG 39553 || || | | |||||| | ||| || | | | ||||||| ||| ||||| ||||| Sbjct 638 TTGCCCTCGTTGTCCTTGAACTTGCGGATCGCGCTCTGCGTGCGCCGGCTCATCACGAAG 579 Query 39554 CGGGCGTT 39561 | ||| || Sbjct 578 CCGGCATT 571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143190086711524