Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq10846 113 4e-20 seq12926 96.9 3e-15 seq11477 96.9 3e-15 seq124414 95.1 1e-14 seq1750 95.1 1e-14 seq13269 86.0 5e-12 seq3441 86.0 5e-12 >seq10846 Length=19378 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || | || |||||||||||||| | || ||| | Sbjct 11503 AATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 11444 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| | || ||| || || || ||||| || |||| || || Sbjct 11443 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 11384 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || || || |||| ||| ||||| || || ||||||| | |||| | || ||||| || Sbjct 11383 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACCTTAGCTGATTACAA 11324 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||| ||||| || | || ||||| || ||||||||||||||| Sbjct 11323 CATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGGAA 11274 >seq12926 Length=15191 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| ||||| || || || ||||| || || ||||||||||| ||| | || |||| Sbjct 527 AAAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAG 468 Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 | |||||| | | |||| || || || || || || |||||| | ||| | Sbjct 467 CTCCGACACCATAG-ACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGG 409 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 | ||||| || || || | || || |||||||| || || | ||| | ||||||| Sbjct 408 ACCAGCAGAGGCTCATCTTCGCCGGTAAACAATTGGAGGACGGTCGCACCCTCGCCGATT 349 Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||| || || || ||| | ||| |||||||||| | || ||||| Sbjct 348 ATAACATTCAGAAGGAATCGACTCTGCATTTGGTGTTGAGGCTCCGTGGAGG 297 >seq11477 Length=17588 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| ||||| || || || ||||| || || ||||||||||| ||| | || |||| Sbjct 517 AAAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAG 458 Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 | |||||| | | |||| || || || || || || |||||| | ||| | Sbjct 457 CTCCGACACCATAG-ACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGG 399 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 | ||||| || || || | || || ||||| ||||| || | ||| | ||||||| Sbjct 398 ACCAGCAGAGGCTCATCTTCGCCGGAAAACAGTTAGAGGACGGTCGCACCCTCGCCGATT 339 Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||| || || || ||| | ||| |||||||||| | || ||||| Sbjct 338 ATAACATTCAGAAGGAATCGACTCTGCATTTGGTGTTGAGGCTCCGTGGAGG 287 >seq124414 Length=715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| ||||| ||||| ||||| ||| | || || | | Sbjct 514 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 455 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| |||| || ||| ||||| || || ||||| |||| ||||| Sbjct 454 GATACTATTG-ACAATGTGAAAGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGATCA 396 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || |||| || || |||||||| ||||||| ||| | ||||| || || Sbjct 395 GCAAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTGCCGACTACAA 336 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 || || ||||||||||| | || ||||| Sbjct 335 TATCCAGAAAGAGTCTACCCTCCACTTGGTG 305 >seq1750 Length=74028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || || |||||||| | ||| ||| | Sbjct 61782 ATGCAGATTTTCGTCAAGACACTCACTGGGAAGACCATTACTCTTGAAGTTGAGAGTTCC 61841 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | | || || |||||| || ||||||||| | ||| |||||| Sbjct 61842 GATACCATAGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 61901 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | |||| ||| || || ||| | || |||| | ||| |||||||||||||| Sbjct 61902 CAGAGGTTGATTTTTGCTGGAAAGCAACTTGAGGATGGCCGAACTCTGGCCGATTATAAC 61961 Query 115466 ATTCAAAAAGAGTCTAC 115482 ||||| || |||||||| Sbjct 61962 ATTCAGAAGGAGTCTAC 61978 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || || || || || || ||||| |||| ||| | Sbjct 62237 AATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACTATTACTCTCGAGGTTGAGAGCTC 62296 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || ||| ||||||| ||||| ||||| | || || | Sbjct 62297 TGACACAATTG-ACAACGTCAAAGCAAAAATTCAGGATAAGGAAGGTATTCCACCAGACC 62355 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || || || || | ||| || ||||| | || || | || || |||| || |||| Sbjct 62356 AACAGAGGCTGATATTTGCTGGAAAACAGCTGGAGGAGGGCAGGACTTTGGCTGACTATA 62415 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| || |||||||||||| | ||| |||| | || | || ||||| Sbjct 62416 ACATCCAGAAAGAGTCTACTCTTCATTTGGTTCTCAGGCTTCGTGGAGG 62464 >seq13269 Length=14915 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || || || || || ||||| ||| | || ||| | Sbjct 13893 AATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAGAGCTC 13952 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || ||| |||| || || ||||||| ||||||||||| | || || | Sbjct 13953 TGATACAATTG-ACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACC 14011 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || || || || | || || ||||| | || |||| || || |||| || |||| Sbjct 14012 AACAGAGGCTGATATTCGCTGGAAAACAGCTCGAGGATGGCAGGACTTTGGCTGACTATA 14071 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||| || |||||||||||| | ||| |||| | || | || ||||||| Sbjct 14072 ACATCCAGAAAGAGTCTACTCTTCATTTGGTTCTCAGGCTTCGTGGAGGAA 14122 >seq3441 Length=50379 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| ||||| ||||| ||||| ||| | || || | | Sbjct 15057 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 14998 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| |||| || ||| ||||| || || || || |||| ||||| Sbjct 14997 GATACTATTG-ACAATGTGAAAGCGAAAATCCAGGACAAGGAGGGAATCCCACCAGATCA 14939 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || |||| || || |||||||| ||||||| ||| | ||||| || || Sbjct 14938 GCAAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTGCCGACTACAA 14879 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 || || |||||||| || | || ||||| Sbjct 14878 TATCCAGAAAGAGTCCACCCTCCACTTGGTG 14848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424651490654680