Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq10846 113 4e-20
seq12926 96.9 3e-15
seq11477 96.9 3e-15
seq124414 95.1 1e-14
seq1750 95.1 1e-14
seq13269 86.0 5e-12
seq3441 86.0 5e-12
>seq10846
Length=19378
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||||||||| || || | || |||||||||||||| | || ||| |
Sbjct 11503 AATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 11444
Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|| ||| ||| | || ||| || || || ||||| || |||| || ||
Sbjct 11443 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 11384
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|| || || |||| ||| ||||| || || ||||||| | |||| | || ||||| ||
Sbjct 11383 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACCTTAGCTGATTACAA 11324
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514
||||||||| ||||| || | || ||||| || |||||||||||||||
Sbjct 11323 CATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGGAA 11274
>seq12926
Length=15191
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341
||| ||||| || || || ||||| || || ||||||||||| ||| | || ||||
Sbjct 527 AAAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAG 468
Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400
| |||||| | | |||| || || || || || || |||||| | ||| |
Sbjct 467 CTCCGACACCATAG-ACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGG 409
Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460
| ||||| || || || | || || |||||||| || || | ||| | |||||||
Sbjct 408 ACCAGCAGAGGCTCATCTTCGCCGGTAAACAATTGGAGGACGGTCGCACCCTCGCCGATT 349
Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|||||||||| || || || ||| | ||| |||||||||| | || |||||
Sbjct 348 ATAACATTCAGAAGGAATCGACTCTGCATTTGGTGTTGAGGCTCCGTGGAGG 297
>seq11477
Length=17588
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341
||| ||||| || || || ||||| || || ||||||||||| ||| | || ||||
Sbjct 517 AAAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAG 458
Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400
| |||||| | | |||| || || || || || || |||||| | ||| |
Sbjct 457 CTCCGACACCATAG-ACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGG 399
Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460
| ||||| || || || | || || ||||| ||||| || | ||| | |||||||
Sbjct 398 ACCAGCAGAGGCTCATCTTCGCCGGAAAACAGTTAGAGGACGGTCGCACCCTCGCCGATT 339
Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|||||||||| || || || ||| | ||| |||||||||| | || |||||
Sbjct 338 ATAACATTCAGAAGGAATCGACTCTGCATTTGGTGTTGAGGCTCCGTGGAGG 287
>seq124414
Length=715
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || ||||| ||||| ||||| ||||| ||||| ||| | || || | |
Sbjct 514 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 455
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|| ||| ||| |||| || ||| ||||| || || ||||| |||| |||||
Sbjct 454 GATACTATTG-ACAATGTGAAAGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGATCA 396
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|||||| || |||| || || |||||||| ||||||| ||| | ||||| || ||
Sbjct 395 GCAAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTGCCGACTACAA 336
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495
|| || ||||||||||| | || |||||
Sbjct 335 TATCCAGAAAGAGTCTACCCTCCACTTGGTG 305
>seq1750
Length=74028
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| ||||| ||||| || ||||| || || |||||||| | ||| ||| |
Sbjct 61782 ATGCAGATTTTCGTCAAGACACTCACTGGGAAGACCATTACTCTTGAAGTTGAGAGTTCC 61841
Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405
|| || | | | || || |||||| || ||||||||| | ||| ||||||
Sbjct 61842 GATACCATAGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 61901
Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465
|| || | |||| ||| || || ||| | || |||| | ||| ||||||||||||||
Sbjct 61902 CAGAGGTTGATTTTTGCTGGAAAGCAACTTGAGGATGGCCGAACTCTGGCCGATTATAAC 61961
Query 115466 ATTCAAAAAGAGTCTAC 115482
||||| || ||||||||
Sbjct 61962 ATTCAGAAGGAGTCTAC 61978
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| ||||| || || || || || || || ||||| |||| ||| |
Sbjct 62237 AATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACTATTACTCTCGAGGTTGAGAGCTC 62296
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| ||| |||| || ||| ||||||| ||||| ||||| | || || |
Sbjct 62297 TGACACAATTG-ACAACGTCAAAGCAAAAATTCAGGATAAGGAAGGTATTCCACCAGACC 62355
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
| || || || || | ||| || ||||| | || || | || || |||| || ||||
Sbjct 62356 AACAGAGGCTGATATTTGCTGGAAAACAGCTGGAGGAGGGCAGGACTTTGGCTGACTATA 62415
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|||| || |||||||||||| | ||| |||| | || | || |||||
Sbjct 62416 ACATCCAGAAAGAGTCTACTCTTCATTTGGTTCTCAGGCTTCGTGGAGG 62464
>seq13269
Length=14915
Score = 86.0 bits (94), Expect = 5e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| ||||| || || || || || || ||||| ||| | || ||| |
Sbjct 13893 AATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAGAGCTC 13952
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
|| || ||| |||| || || ||||||| ||||||||||| | || || |
Sbjct 13953 TGATACAATTG-ACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACC 14011
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
| || || || || | || || ||||| | || |||| || || |||| || ||||
Sbjct 14012 AACAGAGGCTGATATTCGCTGGAAAACAGCTCGAGGATGGCAGGACTTTGGCTGACTATA 14071
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514
|||| || |||||||||||| | ||| |||| | || | || |||||||
Sbjct 14072 ACATCCAGAAAGAGTCTACTCTTCATTTGGTTCTCAGGCTTCGTGGAGGAA 14122
>seq3441
Length=50379
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || ||||| ||||| ||||| ||||| ||||| ||| | || || | |
Sbjct 15057 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 14998
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|| ||| ||| |||| || ||| ||||| || || || || |||| |||||
Sbjct 14997 GATACTATTG-ACAATGTGAAAGCGAAAATCCAGGACAAGGAGGGAATCCCACCAGATCA 14939
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|||||| || |||| || || |||||||| ||||||| ||| | ||||| || ||
Sbjct 14938 GCAAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTGCCGACTACAA 14879
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495
|| || |||||||| || | || |||||
Sbjct 14878 TATCCAGAAAGAGTCCACCCTCCACTTGGTG 14848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424651490654680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |