Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq86780 327 5e-85 seq62508 327 5e-85 seq109977 324 7e-84 seq94261 273 1e-68 seq114502 226 1e-54 seq109048 102 4e-17 >seq86780 Length=899 Score = 327 bits (362), Expect = 5e-85 Identities = 500/705 (71%), Gaps = 13/705 (2%) Strand=Plus/Minus Query 65465 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCGGTGGCC 65524 || || ||||||||||| ||||| || || ||| | || || |||||||| | ||| Sbjct 882 GTCGAGATCTACGGCCCCGAATCGTCGGGCAAGACCACGCTCGCGCTCCACGCCATCGCC 823 Query 65525 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 65584 | |||||||||||||| |||| |||||| | | | || || ||||| | || || || Sbjct 822 GAGGCGCAGAAGGCCGGCGGCACCGCCGCGTTCGTGGATGCCGAGCATGCGCTCGATCCG 763 Query 65585 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGAC-AACCTCGTGGTGGTTCAGCCGGACAC 65643 | ||||||||| ||| || || || ||||| || ||| | || ||||| ||||| Sbjct 762 GTCTACGCCAAGAAGCTGGGCGTCAACATCGACGAAGCTCATCGTCAGCCAGCCCGACAC 703 Query 65644 TGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGT 65703 ||||||||||| |||||||||| ||| || || ||| || | | | | | Sbjct 702 GGGCGAGCAGGCGCTGGAGATCGCGGACACGCTGGTGCGGTCGAACGCGTCGACGTGC-T 644 Query 65704 CGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGA 65763 || | || || || ||||| ||||||||||| || ||| |||| ||||| || || || Sbjct 643 GGTGATCGATTCGGTCGCGGCGCTGGTGCCGCGGGCGGAGATCGAGGGCGAGATGGGCGA 584 Query 65764 CAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCAC 65823 ||| || |||||||| || |||||||| ||| ||||| |||||||| |||| || | Sbjct 583 CAGCCATGTCGGCCTCCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGATCACGGGATC 524 Query 65824 CATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAA 65883 ||| | || |||| |||||| | ||| |||||||| | ||| ||||||||| Sbjct 523 GATCAGCCGCTCCAAGACGCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGG--- 467 Query 65884 CGTGGGCTACGGC---CCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 65940 |||| |||||| ||| || || |||||||||||||| || | | ||||||||| Sbjct 466 CGTGATGTACGGCAATCCG---GACACGACCACGGGCGGCAACGCGCTCAAGTTCTACGC 410 Query 65941 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGATGAGGCTGTCG 65999 || |||||| | || |||| |||| || | || ||||| | || || |||| Sbjct 409 GTCCGTCCGCCTCGACATCCGCCGCA-CGGGCCAGATCAAGGATCGTGACGATATCGTCG 351 Query 66000 GCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCG 66059 ||||| || || ||||||||||||||||||||| | || |||||| | | | || Sbjct 350 GCAACACGACGCGCGTGAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGTCG 291 Query 66060 AGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCG 66119 ||||| | || |||| || |||||| | || | || ||| ||||||| || | || Sbjct 290 AGTTCGACATCATGTATGGCGAGGGCGTGTCCAAGGTGGGCGAGATCCTCGATCTCGGCG 231 Query 66120 TGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66164 | | ||| ||||| |||| |||||||| ||||||| |||| Sbjct 230 TCAAGGCGGGGCTGGTCGAGAAATCGGGCGCGTGGTTCAGCTACG 186 >seq62508 Length=1551 Score = 327 bits (362), Expect = 5e-85 Identities = 528/753 (70%), Gaps = 17/753 (2%) Strand=Plus/Minus Query 65420 CTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGC 65479 |||||| ||| |||||| |||| || ||| | ||||| ||| | || |||| || Sbjct 1319 CTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGTGTGATCGAGGTCTATGGT 1260 Query 65480 CCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCGGTGGCCAATGCGCAGAAGGCC 65539 || || || || || ||| | || || || |||| | ||| | |||||||| | Sbjct 1259 CCCGAGTCGTCGGGCAAGACGACGCTCGCGCTGCACGTCATCGCCGAGTCGCAGAAGAAC 1200 Query 65540 GGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCG 65599 || |||| ||||||| | ||||||| |||||| | || ||||| | || |||||| Sbjct 1199 GGCGGCACTGCCGCCTTCGTCGACGCCGAGCACGCGCTCGACCCGGTCTATGCCAAGAAA 1140 Query 65600 CTCGGT-GTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCT 65658 || || || || |||| | || | ||| ||||| ||||| ||||| ||||| || Sbjct 1139 CTTGGGCGTCAACATCGATGAGCTGATCGTGTCGCAGCCCGACACCGGCGAACAGGCGCT 1080 Query 65659 GGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGT 65718 ||||||||| ||| || ||| || || | | | | | || || || || || Sbjct 1079 GGAGATCGTCGACACGCTGGTCCGCTCCAACGCGATCGACGTGCTGGTGGTCGATTCGGT 1020 Query 65719 GGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCT 65778 || || |||||||||||||| ||| |||| ||||| || || ||||| ||||||||||| Sbjct 1019 CGCCGCGCTGGTGCCGCGCGCGGAGATCGAGGGCGAGATGGGCGACAGCCACGTCGGCCT 960 Query 65779 GCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCAC--- 65835 || ||||| || ||||||||| | |||||||||| || ||| | ||| | || | Sbjct 959 TCAGGCGCGGCTGATGTCGCAGAGCTTGCGCAAGCTGACGGGCTCGATCAGCCGCTCGCG 900 Query 65836 CAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGG 65895 | || | ||| ||| |||||||| | ||| |||||||||| ||| ||||| Sbjct 899 CTGCATGGTGA---TCTTCATCAACCAGCTCCGCATGAAGATCGGC---GTGATGTACGG 846 Query 65896 CCCGAAC---GAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCAT 65952 | ||| ||||| ||||| |||||||| || ||| ||||||||||| || ||| | Sbjct 845 C---AACCCGGAGACGACCACCGGCGGCAACGCGCTGAAATTCTACGCCTCGGTTCGCCT 789 Query 65953 GGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCG 66012 || |||| |||| || | | ||||| |||| |||| ||||||||| ||||| Sbjct 788 CGACATCCGCCGCACCGGCGCGATCAAGGATCGCGACGAGGTCGTCGGCAACGCGACCCG 729 Query 66013 GGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGT 66072 |||||||| |||||||||||| | || |||||| | | | ||||||| | || | Sbjct 728 CGTGAAGGTGGTCAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCAT 669 Query 66073 GTACGGGGAGGGCATCTCGCGTGA-GGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCC 66131 |||||| |||||| | || || | ||| |||||||||| | ||| | || | Sbjct 668 GTACGGCGAGGGCGTTCAGCAAGATCGGCGAGATCCTCGACCTCGGCGTCAAGGCCGGGC 609 Query 66132 TGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66164 |||| ||||||||||||| ||||||| |||| Sbjct 608 TGGTCGAGAAGTCGGGCGCGTGGTTCAGCTACG 576 >seq109977 Length=599 Score = 324 bits (358), Expect = 7e-84 Identities = 375/502 (75%), Gaps = 5/502 (1%) Strand=Plus/Minus Query 65700 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 65759 |||||||| | ||||| || || ||||| ||||||||||||||| |||| ||||| || | Sbjct 581 TCGTCGTCATCGACTCCGTCGCAGCCCTCGTGCCGCGCGCCGAGATCGAGGGCGAGATGG 522 Query 65760 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTG 65819 | ||| |||||||||||| || || || |||||||||||||| | ||||||||||| | Sbjct 521 GTGACTCTCACGTCGGCCTCCAAGCTCGACTCATGTCGCAGGCGCTTCGCAAGCTCACCG 462 Query 65820 GCACCATCT-CCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATC 65878 | || |||| ||| |||| || | ||| |||||||| |||||||||||||| Sbjct 461 GTGGTCTCAGCCAG-ACCCACACCACGATGATCTTCATCAACCAGCTGCGCGAGAAGATC 403 Query 65879 GGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTAC 65938 ||| ||| || |||| ||||||||| ||||||||||||| ||| ||||||| Sbjct 402 GGC---GTGTTCTTCGGCAGCCCCGAGACCACGGCGGGCGGCAAGGCGCTGAAGTTCTAC 346 Query 65939 GCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC 65998 || || || ||| | || |||| ||||||| || |||||| ||| || || ||| Sbjct 345 GCGTCCGTGCGCCTCGACATCCGCCGCATCGAGACGCTGAAGGACGGCACCGACGCGGTC 286 Query 65999 GGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCC 66058 |||||||||||||| || |||||||||||||||||| |||| ||||| | | ||| Sbjct 285 GGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGCAGGCC 226 Query 66059 GAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCC 66118 |||||| | || | ||||| | |||||||| || |||| | || ||||| | | | Sbjct 225 GAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGCGAGGGCAGCCTGATCGACTTCGGC 166 Query 66119 GTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTC 66178 || ||| ||| | || ||||||||||||||||||| || ||||| || | | | | Sbjct 165 GTCGAGCACGGCATCGTCAAGAAGTCGGGCGCCTGGTACACGTACGAGGGCGACCAGCTG 106 Query 66179 GCTCAGGGCAAGCCCAAGGCCG 66200 | ||||||||| ||||||| Sbjct 105 GGCCAGGGCAAGGAGAAGGCCG 84 >seq94261 Length=791 Score = 273 bits (302), Expect = 1e-68 Identities = 428/609 (70%), Gaps = 5/609 (1%) Strand=Plus/Plus Query 65551 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 65610 ||||| | | || || |||||| |||| || || |||||| |||||| || | Sbjct 6 CGCCTTCGTGGATGCCGAGCACGCCCTCGATCCGATCTACGCCCGCAAGCTCGGCGTCAA 65 Query 65611 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 65670 |||||| |||| || | ||||| ||||| ||||||||||| ||||||||| || Sbjct 66 TCTCGACGACCTGCTGATCTCGCAGCCCGACACCGGCGAGCAGGCGCTGGAGATCACCGA 125 Query 65671 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 65730 | || || || |||| | | | | | || || || || |||||||| ||| Sbjct 126 CACGCTGGTGCGCTCCGGCGCGATCGACGTGCTGGTGGTCGATTCGGTGGCGGCGCTGAC 185 Query 65731 GCC-GCGCGCCGAGCTCGAAGGCGACATCGGGGAC-AGTCACGTCGGCCTGCACGCGCGC 65788 ||| ||| |||||| |||| ||||| || || ||| || || |||||| || || ||| Sbjct 186 GCCCGCGGGCCGAGATCGAGGGCGAGATGGGCGACGAGCCAGCCCGGCCTCCAGGCCCGC 245 Query 65789 CTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACG 65848 || ||| |||||| ||||||||||||| || | ||||| || | ||| || | Sbjct 246 CTGATGAGCCAGGCCCTGCGCAAGCTCACCGGTTCGATCTCGCGCTCGAACTGCATGGTG 305 Query 65849 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 65908 ||| |||||||| | || |||||||||| ||| |||||| || ||||||| Sbjct 306 ATCTTCATCAACCAGATCCGGATGAAGATCGGC---GTGATGTACGGCTCGCCCGAGACC 362 Query 65909 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 65968 || || |||||||| || ||| |||||||||||| |||||| | || |||| |||||| Sbjct 363 ACGACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCATC 422 Query 65969 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 66028 | ||| |||||| |||| ||||| ||||||||| ||| || |||||||| ||| Sbjct 423 TCGACCCTGAAGGACCGCGACGAGGCGATCGGCAACCAGGTCCGCGTCAAGGTCGTGAAG 482 Query 66029 AACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 66088 |||||| | || |||||| | | | ||||||| | || ||| ||| |||||| | Sbjct 483 AACAAGGTCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCGTG 542 Query 66089 TCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGC 66148 ||| | | ||| || ||||||| | ||| | ||| | || ||||||| ||| Sbjct 543 TCGAAGGTCGGCGAGCTGATCGACCTCGGCGTCAAGGCCGGCATCGTCGAGAAGTCCGGC 602 Query 66149 GCCTGGTTC 66157 ||||||||| Sbjct 603 GCCTGGTTC 611 >seq114502 Length=552 Score = 226 bits (250), Expect = 1e-54 Identities = 391/561 (70%), Gaps = 24/561 (4%) Strand=Plus/Plus Query 65393 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 65452 || || || || |||| || | | | ||||| || ||||||||||| || | ||| Sbjct 1 GAGGTGATCCCGTCCGGGTCCCTGGGTTTGGACCTGGCGCTGGGCATCGGCGGCTTGCCG 60 Query 65453 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTC 65512 ||||||| | | || |||||||| || ||| || || ||| | || | ||| Sbjct 61 CGGGGCCGCATCATCGAGATCTACGGGCCGGAAAGCTCCGGCAAGACCACGTTGGCGCTC 120 Query 65513 CACGCGGTGGCCAATGCGCAGAAGGCC--GGTGGCAACGCCGCCTACATCGACGCTGAGC 65570 |||||| | ||| | |||||| ||| || |||| | |||| |||||| || |||| Sbjct 121 CACGCGATTGCCGAAGCGCAG--CGCCGGGGCGGCACCTGTGCCTTCATCGATGCGGAGC 178 Query 65571 ACTCCCTGGACCCTGAGTACGC---CAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGG 65627 || | |||||||| ||||| ||| ||| || |||||| | ||||||||| || Sbjct 179 ACGCGCTGGACCCGATCTACGCGCGCAA---GCTGGGCGTGGACGTGGACAACCTCCTGC 235 Query 65628 TGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 65687 || ||||||||| ||| |||||||| |||||||||| ||| || || || | Sbjct 236 TGAGCCAGCCGGACGGTGGTGAGCAGGCGCTGGAGATCGCAGACACGCTGGTTCGCTCGG 295 Query 65688 GCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 65747 ||| | | | | || || ||| || ||||| ||||||||||| || || || | Sbjct 296 GCGCCATCGACGTGCTGGTGGTGGACAGCGTCGCGGCGCTGGTGCCGCGGGCGGAACTGG 355 Query 65748 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 65807 ||||||| || || ||||| |||||||||||||| || || |||||| |||||| ||| Sbjct 356 AAGGCGAGATGGGCGACAGCCACGTCGGCCTGCATGCCCGGCTCATGAGCCAGGCCCTGC 415 Query 65808 GCAAGCTCACTGGCACCATCTCCAGCAC---CAACACGCTGACGCTCTGGGTCAACCAGT 65864 ||||||| || |||| | | | | | || || ||| | ||| |||||||| Sbjct 416 GCAAGCTGACGGGCAGCGTGGCGCGGTCGCGCACCATGCTCA---TCTTCCTCAACCAGA 472 Query 65865 TGCGCGAGAAGATCGGC--AACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAA 65922 | || |||||||||| | || ||| || |||||| ||||||||||||||||| Sbjct 473 TCCGGTTGAAGATCGGCGTGATGTCGGCAAC--CCCGAA----ACCACCACGGGCGGCAA 526 Query 65923 GGCTTTGAGGTTCTACGCCTC 65943 || ||| ||||||||| || Sbjct 527 CGCGCTGAAGTTCTACGCGTC 547 >seq109048 Length=609 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 59482 CTCAAGCAGCGCTCCTTCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAG 59541 |||||||||||||| ||||||||| |||||||| |||||||||||||||||| | || Sbjct 602 CTCAAGCAGCGCTCGTTCGAGACCCGTGAGGGCGAGAAGCGCACCGTCATCGAGCTCGAC 543 Query 59542 GTAGACGAGATCGGCCCGTCGCTG 59565 || || ||| |||||||||||||| Sbjct 542 GTCGAGGAGGTCGGCCCGTCGCTG 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237832948918876