Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq78534 163 4e-35 seq57685 136 5e-27 seq11270 127 3e-24 seq588 89.7 7e-13 >seq78534 Length=1057 Score = 163 bits (180), Expect = 4e-35 Identities = 532/807 (66%), Gaps = 32/807 (4%) Strand=Plus/Minus Query 62528 GCTTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAAC 62586 ||||| ||||||||||||| | | | || || || || || || || ||||| || Sbjct 882 GCTTCGGGGCTATCAAATGGC-ATTCGCAAAGCCATGAATGCATCAGCCAAACCTTGTAC 824 Query 62587 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAAT 62645 ||| | || || || | ||||||| | || | |||| ||||| || | |||||| Sbjct 823 ACCCAGGCCAATGGGACGATGTCTCATGTT-GCTCTTTCGTGCTTCGGGCACAGGATAGA 765 Query 62646 AATTAATATCTATAATTTTATTGAGATTTC-TGACAATTACTTTGACCACATCCTTCAGT 62704 | || || | ||||| || || | || | || || | || |||| |||| | || | Sbjct 764 AGTTGATGTTGATAATCTTGTTCAAGTTGCGTGTCA-TGACCTTGATGACATTATGCAAT 706 Query 62705 TTGAGAAAATCAAA-------TCGCCCATCTATTACAAACATGTT--CAATGCAACAGAT 62755 ||||||| | ||| || | | ||||| || | || || ||||| Sbjct 705 CCCTGAAAATCGTAGATTCCTTCGGCCTGGT-TGACAAA--TGCTGGCAGTGAGACAGAC 649 Query 62756 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62815 || ||||| ||||| || || |||| | | | | ||| | || || || ||||| || Sbjct 648 GCGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGTGCAGAGG 589 Query 62816 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 62875 || ||||||| ||||| | || | ||| || ||||| ||| || ||||| || Sbjct 588 TTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCTTTG 529 Query 62876 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 62935 || || ||||||||| | ||||| ||| |||||| || || || || | ||| | | | Sbjct 528 TACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCACA-GTTT 470 Query 62936 C-GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCG 62991 | ||||||| ||| | | | | |||| || ||| || ||| || |||| Sbjct 469 CTGAGCCTTAATTGTC---TGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGAACAAGGC 413 Query 62992 TTCGAACTCGTCTCCCCAAACATTGTC---CAGTCCAGGACATTCATCCGGACACATCAA 63048 ||||| ||||| || | || ||| || ||||||||||||| |||||||||| Sbjct 412 CTCGAATTCGTCGCCGTAG-CA--GTCAGACAAACCAGGACATTCATTGGGACACATCAG 356 Query 63049 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 | ||| ||| | | | | ||||| ||||| || || ||||||||||| ||||| Sbjct 355 TGTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAGAGCGTA 296 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 || |||||||||| ||| ||| || || || |||||| | | | ||| || | Sbjct 295 GAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAGCCACTC 236 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | | ||||| ||||| || || | ||| ||||| | | || || | ||||| || Sbjct 235 GAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTTGTTGCC 176 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 || ||||| | ||| | ||| ||||| | | | |||| || ||| || | | ||| || Sbjct 175 GCCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAGACCGTT 116 Query 63289 GGATGTACCATTGGTCCCTGAGATATA 63315 || || || || || || | ||| || Sbjct 115 CGAAGTGCCGTTTGTACCCGCGATGTA 89 >seq57685 Length=1792 Score = 136 bits (150), Expect = 5e-27 Identities = 400/609 (66%), Gaps = 8/609 (1%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 |||||||| || || | || | | || ||||| || || | ||| ||||||| || | Sbjct 1186 TCGAACTCATCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAGCGTC 1245 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63111 || ||||| | | || || || ||||| || ||||| |||||||| || || ||| || Sbjct 1246 CAATCTCCATTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGC-ATAGAA 1304 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || || | | | ||||| || || ||||| |||||| ||||| || | Sbjct 1305 GAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGCGAA 1364 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||||| ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 1365 GACATCAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGGGACGCTTGTTGCCACC 1424 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 || || | || | ||| || || || | || | | |||||| | | ||||||||| Sbjct 1425 TTGGTCGACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGGA 1484 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGA 63349 ||| |||||||| || || || ||| | ||||| || || ||| | Sbjct 1485 TGTGCCATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGAACGTTG--AAC 1542 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || || || | || ||||| | |||||| || | ||||| ||||| ||| Sbjct 1543 CCGATGCCGCCAGCATTCTTCGAGATCATTGCGCAGGTCTTGAGTGTATCGTAGATACCC 1602 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || || || || ||| | | || | || || ||| | || || | ||| Sbjct 1603 TCGATGCTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGTTGGGAGTA 1662 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTA 63528 || ||| | || | || || |||||||| || || | || | || | |||| ||||| Sbjct 1663 CCAGCACTGAAGAGTGTCGGCGAAGCGTGCGTGAAGTACTTGTTTGACATGTAG-TTGTA 1721 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||| || || | || |||||| |||||| || || ||||||||||| | ||| Sbjct 1722 GGTCTCGATGGCAGCCTCGATATCCTCGCCATGAATGCCAACGGCGACACGCATGATCAT 1781 Query 63589 GTGCTGAGG 63597 |||||||| Sbjct 1782 CTGCTGAGG 1790 >seq11270 Length=18388 Score = 127 bits (140), Expect = 3e-24 Identities = 379/580 (65%), Gaps = 10/580 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||||||||| || || ||||||| || || |||||||| || || | Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||||| || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCAT 32835 ||| ||||| || || || || || || ||||| | ||| | ||| ||| Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGC-GAACGATTCTCCGCCGTC-- 5663 Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 |||||| | ||||| ||||||||||| || ||||| | ||||| || || | Sbjct 5664 -GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGT 5722 Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955 || || ||| || || || || | ||| || || | ||| ||||| |||| Sbjct 5723 GGAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACA 5782 Query 32956 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAA 33015 |||| || || || || || || || || || || || ||||| | |||||| | || Sbjct 5783 TTTCAGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAA 5842 Query 33016 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 33075 || || || | || | | | || | ||| || || || ||||| ||| | Sbjct 5843 CTTGGACCTCCTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGG 5902 Query 33076 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33135 | || || || | || || | | || | | ||| | ||||| || | ||| | Sbjct 5903 CGAAGAAGGCGAGCACGTGAGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAGT 5962 Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33195 | | || || | ||| || || || | ||||| || || ||||| ||||| | Sbjct 5963 GACGTAAGTCGCCGGAGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCT 6022 Query 33196 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 | ||||| | |||||| || | || ||||| || || || Sbjct 6023 TGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 6062 >seq588 Length=109198 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | || |||||||| ||||| ||||| | ||| | | || | Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||| |||| || ||||| | ||| |||||||| || | || | |||||| Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| ||||| || | ||| | | ||||| | ||| || | || | Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| |||||||| || | || |||||||| || || || || Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | |||| || || | ||| | || | | |||||||| ||| ||| Sbjct 13262 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 13203 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || || ||||| || || | ||||||||||| || ||| Sbjct 13202 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGAG 13143 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| || | || || |||||| || ||||| ||| Sbjct 13142 ACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATATG 13083 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 13082 CCTTCAATACTATCATCTTTCATG 13059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632573921684400