Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq78534 163 4e-35
seq57685 136 5e-27
seq11270 127 3e-24
seq588 89.7 7e-13
>seq78534
Length=1057
Score = 163 bits (180), Expect = 4e-35
Identities = 532/807 (66%), Gaps = 32/807 (4%)
Strand=Plus/Minus
Query 62528 GCTTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAAC 62586
||||| ||||||||||||| | | | || || || || || || || ||||| ||
Sbjct 882 GCTTCGGGGCTATCAAATGGC-ATTCGCAAAGCCATGAATGCATCAGCCAAACCTTGTAC 824
Query 62587 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAAT 62645
||| | || || || | ||||||| | || | |||| ||||| || | ||||||
Sbjct 823 ACCCAGGCCAATGGGACGATGTCTCATGTT-GCTCTTTCGTGCTTCGGGCACAGGATAGA 765
Query 62646 AATTAATATCTATAATTTTATTGAGATTTC-TGACAATTACTTTGACCACATCCTTCAGT 62704
| || || | ||||| || || | || | || || | || |||| |||| | || |
Sbjct 764 AGTTGATGTTGATAATCTTGTTCAAGTTGCGTGTCA-TGACCTTGATGACATTATGCAAT 706
Query 62705 TTGAGAAAATCAAA-------TCGCCCATCTATTACAAACATGTT--CAATGCAACAGAT 62755
||||||| | ||| || | | ||||| || | || || |||||
Sbjct 705 CCCTGAAAATCGTAGATTCCTTCGGCCTGGT-TGACAAA--TGCTGGCAGTGAGACAGAC 649
Query 62756 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62815
|| ||||| ||||| || || |||| | | | | ||| | || || || ||||| ||
Sbjct 648 GCGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATTTCGGTGCAGAGG 589
Query 62816 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 62875
|| ||||||| ||||| | || | ||| || ||||| ||| || ||||| ||
Sbjct 588 TTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCTTTG 529
Query 62876 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 62935
|| || ||||||||| | ||||| ||| |||||| || || || || | ||| | | |
Sbjct 528 TACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCATACCACA-GTTT 470
Query 62936 C-GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCG 62991
| ||||||| ||| | | | | |||| || ||| || ||| || ||||
Sbjct 469 CTGAGCCTTAATTGTC---TGGCGGCCCTTTCCTGCCTTCTCATATTTGGTGAACAAGGC 413
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTC---CAGTCCAGGACATTCATCCGGACACATCAA 63048
||||| ||||| || | || ||| || ||||||||||||| ||||||||||
Sbjct 412 CTCGAATTCGTCGCCGTAG-CA--GTCAGACAAACCAGGACATTCATTGGGACACATCAG 356
Query 63049 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108
| ||| ||| | | | | ||||| ||||| || || ||||||||||| |||||
Sbjct 355 TGTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCAGAGAGCGTA 296
Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168
|| |||||||||| ||| ||| || || || |||||| | | | ||| || |
Sbjct 295 GAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTGAGCCACTC 236
Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228
| | ||||| ||||| || || | ||| ||||| | | || || | ||||| ||
Sbjct 235 GAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTCTCTTGTTGCC 176
Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288
|| ||||| | ||| | ||| ||||| | | | |||| || ||| || | | ||| ||
Sbjct 175 GCCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGGCGTCAGACCGTT 116
Query 63289 GGATGTACCATTGGTCCCTGAGATATA 63315
|| || || || || || | ||| ||
Sbjct 115 CGAAGTGCCGTTTGTACCCGCGATGTA 89
>seq57685
Length=1792
Score = 136 bits (150), Expect = 5e-27
Identities = 400/609 (66%), Gaps = 8/609 (1%)
Strand=Plus/Plus
Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052
|||||||| || || | || | | || ||||| || || | ||| ||||||| || |
Sbjct 1186 TCGAACTCATCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAGCGTC 1245
Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63111
|| ||||| | | || || || ||||| || ||||| |||||||| || || ||| ||
Sbjct 1246 CAATCTCCATTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGC-ATAGAA 1304
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
|| || | | | ||||| || || ||||| |||||| ||||| || |
Sbjct 1305 GAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGCGAA 1364
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
| ||||| ||||| || || | ||| ||||| | | || || || ||||| || ||
Sbjct 1365 GACATCAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGGGACGCTTGTTGCCACC 1424
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
|| || | || | ||| || || || | || | | |||||| | | |||||||||
Sbjct 1425 TTGGTCGACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGGA 1484
Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGA 63349
||| |||||||| || || || ||| | ||||| || || ||| |
Sbjct 1485 TGTGCCATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGAACGTTG--AAC 1542
Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409
|| || || || || | || ||||| | |||||| || | ||||| ||||| |||
Sbjct 1543 CCGATGCCGCCAGCATTCTTCGAGATCATTGCGCAGGTCTTGAGTGTATCGTAGATACCC 1602
Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469
|| || || || ||| | | || | || || ||| | || || | |||
Sbjct 1603 TCGATGCTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGTTGGGAGTA 1662
Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTA 63528
|| ||| | || | || || |||||||| || || | || | || | |||| |||||
Sbjct 1663 CCAGCACTGAAGAGTGTCGGCGAAGCGTGCGTGAAGTACTTGTTTGACATGTAG-TTGTA 1721
Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588
||||| || || | || |||||| |||||| || || ||||||||||| | |||
Sbjct 1722 GGTCTCGATGGCAGCCTCGATATCCTCGCCATGAATGCCAACGGCGACACGCATGATCAT 1781
Query 63589 GTGCTGAGG 63597
||||||||
Sbjct 1782 CTGCTGAGG 1790
>seq11270
Length=18388
Score = 127 bits (140), Expect = 3e-24
Identities = 379/580 (65%), Gaps = 10/580 (2%)
Strand=Plus/Plus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| |||||||||||||| || || ||||||| || || |||||||| || || |
Sbjct 5488 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 5547
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779
|||||||||| || |||||||| ||||||||||| | |||| | | | || || |||||
Sbjct 5548 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAA 5606
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCAT 32835
||| ||||| || || || || || || ||||| | ||| | ||| |||
Sbjct 5607 AATGCCTTCGACGCAGGCGAAAGCGATGAGCCTCTCGGC-GAACGATTCTCCGCCGTC-- 5663
Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895
|||||| | ||||| ||||||||||| || ||||| | ||||| || || |
Sbjct 5664 -GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGT 5722
Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955
|| || ||| || || || || | ||| || || | ||| ||||| ||||
Sbjct 5723 GGAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACA 5782
Query 32956 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAA 33015
|||| || || || || || || || || || || || ||||| | |||||| | ||
Sbjct 5783 TTTCAGAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAA 5842
Query 33016 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 33075
|| || || | || | | | || | ||| || || || ||||| ||| |
Sbjct 5843 CTTGGACCTCCTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGG 5902
Query 33076 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33135
| || || || | || || | | || | | ||| | ||||| || | ||| |
Sbjct 5903 CGAAGAAGGCGAGCACGTGAGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAGT 5962
Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33195
| | || || | ||| || || || | ||||| || || ||||| ||||| |
Sbjct 5963 GACGTAAGTCGCCGGAGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCT 6022
Query 33196 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235
| ||||| | |||||| || | || ||||| || || ||
Sbjct 6023 TGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 6062
>seq588
Length=109198
Score = 89.7 bits (98), Expect = 7e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
|| || ||||| || | || |||||||| ||||| ||||| | ||| | | || |
Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881
Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | ||| |||| || ||||| | ||| |||||||| || | || | ||||||
Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATTAA 12822
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||||||||| ||||| || | ||| | | ||||| | ||| || | || |
Sbjct 12821 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAG 12762
Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
||||| |||||||| || | || |||||||| || || || ||
Sbjct 12761 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714
Score = 89.7 bits (98), Expect = 7e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
|| || ||||| | |||| || || | ||| | || | | |||||||| ||| |||
Sbjct 13262 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 13203
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|| ||||| ||||| || || ||||| || || | ||||||||||| || |||
Sbjct 13202 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGAG 13143
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| ||| ||||| || || ||| || | || || |||||| || ||||| |||
Sbjct 13142 ACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATATG 13083
Query 63407 CCCTCTATACTATCATCCATCATG 63430
|| || ||||||||||| |||||
Sbjct 13082 CCTTCAATACTATCATCTTTCATG 13059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 632573921684400
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