Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq99200 167 3e-36 seq72010 136 4e-27 seq4265 95.1 1e-14 seq127942 93.3 5e-14 seq4176 93.3 5e-14 seq32 93.3 5e-14 seq43879 91.5 2e-13 seq9493 91.5 2e-13 seq132655 89.7 6e-13 seq8069 89.7 6e-13 seq6159 89.7 6e-13 seq5190 89.7 6e-13 seq812 89.7 6e-13 seq7039 87.8 2e-12 seq45484 84.2 2e-11 seq10841 84.2 2e-11 seq120868 82.4 8e-11 seq14014 82.4 8e-11 seq7215 82.4 8e-11 seq6010 82.4 8e-11 seq1896 82.4 8e-11 >seq99200 Length=725 Score = 167 bits (184), Expect = 3e-36 Identities = 348/517 (67%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || || || || || | |||||| || || || |||| ||| ||| |||||| | Sbjct 213 GCAGGCGAAATCTGTGTGCATACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAG 272 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || |||| ||||||||||| || || || || ||| || || || || Sbjct 273 ACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAA 332 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA----TTTGCGGAATTAC 93266 || || || ||||| || |||||||| | ||||| ||| ||| ||| | ||| Sbjct 333 GATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGGGCGAAACTGCTTTCC----TTAT 388 Query 93267 TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 ||||||| | || ||||| || || || || || || || | || ||||||| Sbjct 389 CAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGGATGCATGGAATAGTGTCGATAG 448 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 | | || ||||| | | || | | ||| | ||||||| || | || | Sbjct 449 CATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAAATGTATCAATGAGCAAGCTGT 508 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 ||||||| || |||| ||||||||| || ||||| || || || |||| ||| || | Sbjct 509 ACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAACCATAAAAGCATCGAGCCTCTG 568 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | ||||| || || |||||||| || || || || ||||| ||||| || || | Sbjct 569 GTACTTGCACCTCACCCGAGAATCTCTCGACAAGGTTCTCGTTGACAATACCGTCAGAGG 628 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTAT 93563 | || || ||||| | | || ||||| | | ||||||| || || ||| || | Sbjct 629 CAGCGAAGAAAGCAAGGACGTGTGAGATAAAGTATCTCTCATCGTCGTTGAGCTTGTTGT 688 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTC 93600 ||| ||| | ||||||||| ||||| || ||||| Sbjct 689 GCCAGTCGTGCATATCTTTTGAGAGATCCACCTCTTC 725 >seq72010 Length=1221 Score = 136 bits (150), Expect = 4e-27 Identities = 201/284 (71%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 93365 TATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAAT 93424 || |||||||| | ||||| ||||| ||||| |||| ||||| || || ||||| Sbjct 996 TAGGTATCGATCAGGAGAGAGTACATCTCAGAGTGGATGTTCTCGATCATGATCTGGAAA 937 Query 93425 CCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTT 93484 || ||||| || | |||||| | | || ||||| || |||| ||| | | || Sbjct 936 CCATAGAAGCAACGAGCTTCTGGTACTTGAACTTCACCTGAGAATCGCTCGAGCAAGTTC 877 Query 93485 TCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTC 93544 || || || ||||||||||| || || || || || | | || ||||| | | Sbjct 876 TCGTTTACGATACCATCGGAGGCAGCGAAGAAGGCGAGAACGTGAGAGATAAAGTAACGC 817 Query 93545 TCATCATCTTTAA---GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCG 93601 |||||||| |||| | || | ||| ||| ||||| || || |||||||| ||||| Sbjct 816 TCATCATCGTTAAGACGGTTGTTCCAGTCGTGAAGATCCTTGGATAGATCGACCTCTTCA 757 Query 93602 ACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||||||| || |||||||||||||| |||||||| | ||| || Sbjct 756 GCAGTCCAGAAGGATGCTTCTGCTTTCTTGTACATTTGCCAGAT 713 >seq4265 Length=44339 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 27647 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 27706 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| ||||||| || || || |||||| || Sbjct 27707 TGGGTTCAAATCCCACTTCTGACAATTTTTTCTTCTTATTTTTATT 27752 >seq127942 Length=710 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 61 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 120 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 121 GCGTGGGTTCAAATCCCACTTCTGACAA 148 >seq4176 Length=44336 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/112 (79%), Gaps = 8/112 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 7509 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 7568 Query 126324 TGGGTTCGAACCCCACACCTGAC-----AAATTATTA-TTGGAATTTTTGTT 126369 ||||||| || ||||| ||||| ||||| ||| |||| |||||| || Sbjct 7569 TGGGTTCAAATCCCACTTCTGACATTTAAAATTTTTATTTGGTATTTTTATT 7620 >seq32 Length=225041 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGG 126319 || ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 154746 TAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAG 154687 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||| || ||||| |||||||| Sbjct 154686 GGCGTGGGTTCAAATCCCACTTCTGACAAA 154657 >seq43879 Length=1815 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||||| | | || Sbjct 163 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGA 104 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 103 GCGTGGGTTCAAATCCCACTTCTGACA 77 >seq9493 Length=24853 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||||| | | || Sbjct 21589 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGA 21530 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 21529 GCGTGGGTTCAAATCCCACTTCTGACA 21503 >seq132655 Length=2692 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 2013 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1954 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 ||||||| || ||||| ||||||| | |||| Sbjct 1953 TGGGTTCAAATCCCACTTCTGACAATATTTTAT 1921 >seq8069 Length=29165 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 15253 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 15194 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 ||||||| || ||||| ||||||| | |||| Sbjct 15193 TGGGTTCAAATCCCACTTCTGACAATATTTTAT 15161 >seq6159 Length=33383 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/106 (80%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 26632 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 26575 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| ||||||| || || || ||||||| Sbjct 26574 GCGTGGGTTCAAATCCCACTTCTGACAATTTGTT-TTATAATTTTT 26530 >seq5190 Length=38520 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 8222 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 8281 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| || ||||| ||||||| Sbjct 8282 GTGGGTTCAAATCCCACTTCTGACAA 8307 >seq812 Length=98815 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 71021 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 71080 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 71081 TGGGTTCAAATCCCACTTCTGACAAA 71106 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 73890 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 73947 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 73948 GGGCGTGGGTTCAAATCCCACTTCTGACA 73976 >seq7039 Length=29452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 9533 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 9476 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| |||||| || Sbjct 9475 GGGTTCAAATCCCACAGCTGTCAAATTTTT 9446 >seq45484 Length=1479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1141 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAG 1084 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1083 GGCGTGGGTTCAAATCCCACTTCTGACA 1056 >seq10841 Length=19175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 18100 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAG 18043 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 18042 GGCGTGGGTTCAAATCCCACTTCTGACA 18015 >seq120868 Length=2215 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 462 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 405 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 404 TTCAAATCCCACAGCTGTCAAGTT 381 >seq14014 Length=14003 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 9401 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 9344 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 9343 TTCAAATCCCACAGCTGTCAAGTT 9320 >seq7215 Length=28830 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 15376 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 15319 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 15318 TTCAAATCCCACAGCTGTCAATTT 15295 >seq6010 Length=33938 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 301 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 244 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 243 TTCAAATCCCACAGCTGTCAAA 222 >seq1896 Length=71110 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 29629 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 29572 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 29571 TTCAAATCCCACAGCTGTCAAGTT 29548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555930919032360