Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq124414 113 4e-20 seq3441 104 2e-17 seq23762 96.9 3e-15 seq16751 96.9 3e-15 seq10846 96.9 3e-15 seq13269 82.4 6e-11 >seq124414 Length=715 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| | || || || ||||| ||| | || ||| | | Sbjct 514 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 455 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| ||||| ||||| ||||| | || ||||| Sbjct 454 GATACTATTGACAATGTGAAAGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAG 395 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||||||| |||| || || ||||||||||||||| | |||| | ||||| || ||| Sbjct 394 CAAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTGCCGACTACAAT 335 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| ||||| || || || ||| | ||||| || ||||| Sbjct 334 ATCCAGAAAGAGTCTACCCTCCACTTGGTGCTTCGTCTCCGTGGTGG 288 >seq3441 Length=50379 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| | || || || ||||| ||| | || ||| | | Sbjct 15057 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 14998 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| ||||| ||||| || || | || ||||| Sbjct 14997 GATACTATTGACAATGTGAAAGCGAAAATCCAGGACAAGGAGGGAATCCCACCAGATCAG 14938 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||||||| |||| || || ||||||||||||||| | |||| | ||||| || ||| Sbjct 14937 CAAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTGCCGACTACAAT 14878 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || || || ||| | ||||| || ||||| Sbjct 14877 ATCCAGAAAGAGTCCACCCTCCACTTGGTGCTTCGTCTCCGTGGTGG 14831 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || |||| || ||||| || || ||||| ||| Sbjct 14374 AATGCAAATTTTTGTGAAGACCTTGACTGGAAAAACTATAACATTGGAAGTTGAAAGTTC 14315 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATC 111304 ||| || ||| | || || ||| || |||||||| || | |||| || | | Sbjct 14314 TGATACTATTGATAATGTCAAGGCAAAGATACAAGACAAAGAGGG-GATCCCTCCGGACC 14256 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 | || ||||| || | ||| ||||| || |||||||| ||| | || ||||||| Sbjct 14255 AGCAGAGGCTGATATTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTTGCTGATTATA 14196 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| ||||| ||||| ||||| || || ||| | |||||||| ||||| Sbjct 14195 ATATCCAAAAGGAATCGACACTTCACTTGGTGCTTCGTCTGCGTGGTGG 14147 >seq23762 Length=5545 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| |||||||| || || |||| || |||||||| ||| |||| ||| | Sbjct 880 AATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 939 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || ||| | | || || || || ||||| ||||| | || | || || Sbjct 940 AGACACTATTGACAATGTCAAGGCCAAGATACAAGACAAGGAAGGTATCCCACTAGACCA 999 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||||||||| | ||| || | ||| | |||||| | ||| | || ||||| || Sbjct 1000 ACAAAGGCTTATCTTTGCAGGAACGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 1059 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| || ||||| || ||| ||||| |||| || | ||||| Sbjct 1060 TATCCAAAAGGAGTCTACCCTTCATCTAGTGCTGCGCCTTCATGGTGG 1107 >seq16751 Length=10463 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| |||||||| || || ||||||| |||||||| ||| |||| ||| | Sbjct 6292 AATGCAGATTTTTGTGAAGACTTTGACCGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 6233 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || ||| | | || || || || ||||| ||||| | || || || Sbjct 6232 AGACACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 6173 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||||||||| | ||| || || ||| | |||||| | ||| | || ||||| || Sbjct 6172 ACAAAGGCTTATCTTTGCAGGAAAGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 6113 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || || ||||| || ||| | ||| |||| || || ||||| Sbjct 6112 TATCCAGAAGGAGTCTACCCTTCATCTGGTGCTGCGCCTTCGTGGTGG 6065 >seq10846 Length=19378 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| ||||| || || || |||| || |||||||| ||| |||| ||| | Sbjct 11275 AATGCAGATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 11216 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || ||| | | || || ||| || ||||| ||||| | || || || Sbjct 11215 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATACCACCAGACCA 11156 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||||||| ||| ||||| || | |||||| | ||| | || ||||| || Sbjct 11155 GCAAAGGCTTATTTTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 11096 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||| || || ||||| || ||| | ||| | || || || ||||| Sbjct 11095 TATACAGAAGGAGTCTACCCTTCATCTGGTGCTTCGCCTTCGTGGTGG 11048 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || |||| || ||||||||||| |||| || | Sbjct 11503 AATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 11444 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || ||| | || ||| || || |||||||| || | || || || Sbjct 11443 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 11384 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| ||||| |||| ||| ||||| || ||||||||| | ||| | || ||||| || Sbjct 11383 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACCTTAGCTGATTACAA 11324 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || || ||| |||| |||| || || Sbjct 11323 CATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGG 11276 >seq13269 Length=14915 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| ||||||||||| || |||| || || ||||| ||| | || ||| | Sbjct 14121 AATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTC 14180 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || ||| ||| ||| || || ||||| |||| ||||| Sbjct 14181 TGATACCATAGATAATGTTAAAGCAAAGATTCAAGATAAGGAAGGGATTCCTCCGGATCA 14240 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| || | ||| || |||||| | || ||| ||| |||| ||||| || Sbjct 14241 GCAGAGGCTCATCTTTGCTGGAAAACAACTTGAGGATGGCCGCACTCTGGCTGATTACAA 14300 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || ||||| ||||| ||| | || | ||||| || ||||| Sbjct 14301 TATTCAGAAGGAATCAACACTCCATCTTGTTCTCCGTCTTCGTGGTGG 14348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422351241833800