Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq16726 143 5e-29 seq3297 95.1 2e-14 seq34118 93.3 9e-14 seq8383 89.7 1e-12 seq123931 87.8 4e-12 seq58475 87.8 4e-12 seq57822 87.8 4e-12 seq26598 87.8 4e-12 seq19136 87.8 4e-12 seq16521 87.8 4e-12 seq8973 87.8 4e-12 seq6095 87.8 4e-12 seq4505 87.8 4e-12 seq3968 87.8 4e-12 seq3188 87.8 4e-12 seq2068 87.8 4e-12 seq1673 87.8 4e-12 seq1447 87.8 4e-12 seq1215 87.8 4e-12 seq870 87.8 4e-12 >seq16726 Length=10427 Score = 143 bits (158), Expect = 5e-29 Identities = 207/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 |||||| || |||||||||| || | || || | ||| | || | |||||||| Sbjct 2215 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCAATGGCAGATCTTCAGAGGTCTATTCC 2156 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | | |||| |||||||| ||||| || | || || || || | | |||||| | Sbjct 2155 CTCCATGGTTGATGGCCTGAAGCCTGGCCAAAGGAAAATTCTTTTCTGCTCTTTCAAGAG 2096 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 |||| | || | ||| || || || ||||||||||||||||| || || ||| | Sbjct 2095 GAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCAGC 2036 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || ||||| |||||||||||||| | || |||| | || |||||||| |||||||| Sbjct 2035 TTATCATCATGGTGAGCAGAGTCTTGCGAGTACCATCATCGGAATGGCACAAGACTATGT 1976 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||| |||||||| ||| |||| | || || || || ||||| ||||| Sbjct 1975 GGGCTCCAACAACATTAACCTGCTTCAACCAAATGGCCAATTTGGCACTCGT 1924 >seq3297 Length=52244 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 46124 AGATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 46065 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 46064 CGAGCCCCAC 46055 >seq34118 Length=2799 Score = 93.3 bits (102), Expect = 9e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 |||| || |||| ||||| || |||||||| || ||||| |||| ||||||||||| Sbjct 2597 TCATCGGTGCCAACGGTGCAGGCAAGTCTACACTCATCAAGATCCTCACTGGCGAGACG- 2655 Query 280234 AGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | |||| ||| | | | |||||||||||| |||| || | ||| || ||| Sbjct 2656 ATTCCACAATCTGGTAGGGTCGAGAAGCATCCCAATCTGCGTATCGGATACATCAAGCAG 2715 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||| || | ||| |||| | ||| |||| | |||||| || ||||| | || ||| Sbjct 2716 CACGCACTCGAGCACGTCGAAATGCACATGGAAAAGACTCCGAATCAATATTTACAATGG 2775 Query 280353 CGCTATGC 280360 ||||| || Sbjct 2776 CGCTACGC 2783 >seq8383 Length=25451 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 9712 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9653 Query 142564 CCCACATCGGGC 142575 |||||| |||| Sbjct 9652 CCCACAGTGGGC 9641 >seq123931 Length=1761 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1641 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1700 Query 142563 CCCCAC 142568 |||||| Sbjct 1701 CCCCAC 1706 >seq58475 Length=1747 Score = 87.8 bits (96), Expect = 4e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| ||| |||| ||| || || ||||||| ||||| ||||||||| Sbjct 808 GGTGAGGATCTCTGTAACTGCACATTCAATCTGGCCTATGGTGCTAAGATCCTGCTAAAC 867 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || || | |||||||||| | || || ||||| | || || |||||| | Sbjct 868 AACACAAATCTTCGCCTCAAGCGTGGTCAGCGTTACGGTCTATTGGGCCCTAATGGATCT 927 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || || | ||| || ||||| ||||| || | || |||| || || || || ||| Sbjct 928 GGCAAAACCACCCTCATGCGTGCCATCAACAATGAGCAAGTGGAGGGCTTCCCCAA-GCA 986 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || ||||| |||||||| ||||||| Sbjct 987 GAGCGAGGTCAAGACTGTCTATGTTGAGCACGATCTCGACTC 1028 >seq57822 Length=2348 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 262 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 203 Query 142563 CCCCAC 142568 |||||| Sbjct 202 CCCCAC 197 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 505 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 446 Query 142564 CCCAC 142568 ||||| Sbjct 445 CCCAC 441 >seq26598 Length=4495 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3194 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3135 Query 142563 CCCCAC 142568 |||||| Sbjct 3134 CCCCAC 3129 >seq19136 Length=8672 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6998 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7057 Query 142563 CCCCAC 142568 |||||| Sbjct 7058 CCCCAC 7063 >seq16521 Length=11114 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8987 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9046 Query 142563 CCCCAC 142568 |||||| Sbjct 9047 CCCCAC 9052 >seq8973 Length=23401 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2715 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2656 Query 142563 CCCCAC 142568 |||||| Sbjct 2655 CCCCAC 2650 >seq6095 Length=33603 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 20962 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20903 Query 142563 CCCCAC 142568 |||||| Sbjct 20902 CCCCAC 20897 >seq4505 Length=42050 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 34843 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 34902 Query 142563 CCCCAC 142568 |||||| Sbjct 34903 CCCCAC 34908 >seq3968 Length=45572 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4177 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4236 Query 142563 CCCCAC 142568 |||||| Sbjct 4237 CCCCAC 4242 >seq3188 Length=57336 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 29117 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 29176 Query 142563 CCCCAC 142568 |||||| Sbjct 29177 CCCCAC 29182 >seq2068 Length=66107 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 26538 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 26479 Query 142563 CCCCAC 142568 |||||| Sbjct 26478 CCCCAC 26473 >seq1673 Length=73678 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8376 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8317 Query 142563 CCCCAC 142568 |||||| Sbjct 8316 CCCCAC 8311 >seq1447 Length=82073 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 37774 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 37833 Query 142563 CCCCAC 142568 |||||| Sbjct 37834 CCCCAC 37839 >seq1215 Length=84607 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 67771 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 67712 Query 142563 CCCCAC 142568 |||||| Sbjct 67711 CCCCAC 67706 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 68012 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 67953 Query 142564 CCCAC 142568 ||||| Sbjct 67952 CCCAC 67948 >seq870 Length=95227 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 35666 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 35607 Query 142563 CCCCAC 142568 |||||| Sbjct 35606 CCCCAC 35601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026077545218349