Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq16751 109 4e-19 seq10846 104 2e-17 seq1584 104 2e-17 seq23762 100 2e-16 seq13269 100 2e-16 seq3871 96.9 2e-15 seq50277 87.8 1e-12 >seq16751 Length=10463 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || || || || |||||||| ||| |||| ||| | | Sbjct 6292 AATGCAGATTTTTGTGAAGACTTTGACCGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 6233 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || | ||| || || || || || ||| | || | |||| Sbjct 6232 AGACACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 6173 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || ||||||||||| || || ||||| |||||| || ||| | || |||||||| Sbjct 6172 ACAAAGGCTTATCTTTGCAGGAAAGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 6113 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| |||||||| ||||| |||||| |||| Sbjct 6112 TATCCAGAAGGAGTCTACCCTTCATCTGGT 6083 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || || || |||||||| ||||| |||| || | Sbjct 6520 AATGCAAATTTTTGTTAAGACCTTGACTGGCAAAACAATTACTTTGGAGGTTGAGAGTTC 6461 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| || || || || |||||| | || | |||| Sbjct 6460 AGATACTATCGATAATGTTAAAGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGACCA 6401 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || || ||||||||||| || | |||||| || || | ||||||||||| Sbjct 6400 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCCGATTACAA 6341 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| ||||| || || || || |||| | ||||| || || ||| Sbjct 6340 TATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGTTTGCGTGGTGGA 6292 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| ||||| ||||| |||||||| || |||||| || ||| |||| |||| Sbjct 5948 ACCAGCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATT 5889 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||||| || ||||| |||||||| || Sbjct 5888 ACAATATCCAAAAGGAGTCTACTCTGCA 5861 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || || || || ||||||||||| ||||| || | | Sbjct 6748 AATGCAAATTTTTGTGAAGACCTTGACTGGTAAAACCATTACTTTGGAAGTTGAGAGCTC 6689 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || |||||| || || |||||| | || | |||| Sbjct 6688 CGACACCATCGATAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGACCA 6629 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | |||||||||||||| || || |||||| || | ||||| ||||| Sbjct 6628 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCCTAGCCGACTACAA 6569 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| || |||||||| || || || |||| Sbjct 6568 TATCCAAAAGGAATCCACCCTCCACCTGGT 6539 >seq10846 Length=19378 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || | || || || || || |||||||| ||| |||| ||| | | Sbjct 11275 AATGCAGATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 11216 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || | ||| ||| || || || || ||| |||| | |||| Sbjct 11215 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATACCACCAGACCA 11156 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || ||||| ||||| ||||| || || |||||| || ||| | || |||||||| Sbjct 11155 GCAAAGGCTTATTTTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 11096 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| |||||||| ||||| |||||| |||| Sbjct 11095 TATACAGAAGGAGTCTACCCTTCATCTGGT 11066 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || || || || ||||||||||| |||| || | | Sbjct 11503 AATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 11444 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || || || || ||||||||| | || |||| Sbjct 11443 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 11384 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || || ||||||||||| || | |||||| || ||| | || |||||||| Sbjct 11383 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACCTTAGCTGATTACAA 11324 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| ||||| || || || || |||| | || || ||||||||| Sbjct 11323 CATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGGA 11275 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || |||| || || || || || ||||| ||| |||| ||| | Sbjct 11047 AATGCAGATTTTCGTTAAGACCTTGACTGGTAAGACCATAACCTTGGAGGTTGAAAGTTC 10988 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||| ||| || || ||||| | ||| | | || Sbjct 10987 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCAGATCA 10928 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| ||||| ||||| |||||||| || |||||| || ||| |||| |||||||| Sbjct 10927 GCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATTACAA 10868 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||| || ||||| |||||||| || Sbjct 10867 TATCCAAAAGGAGTCTACTCTGCA 10844 >seq1584 Length=77134 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||| | || ||| | || || || || || |||||||| ||| |||| ||| | | Sbjct 61731 AATGTAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 61672 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || | ||| || || || || || ||| | || | |||| Sbjct 61671 AGACACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 61612 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || |||||||||| || |||||||| |||||| || ||| | || |||||||| Sbjct 61611 ACAAAGGGTTATCTTTGCAGGAAAACAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 61552 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| |||||||| ||||| |||||| |||| Sbjct 61551 TATCCAGAAGGAGTCTACCCTTCATCTGGT 61522 >seq23762 Length=5545 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || || || || |||||||| ||| |||| ||| | | Sbjct 880 AATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 939 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || | ||| || || || || || ||| | || || |||| Sbjct 940 AGACACTATTGACAATGTCAAGGCCAAGATACAAGACAAGGAAGGTATCCCACTAGACCA 999 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || ||||||||||| || | ||||| |||||| || ||| | || |||||||| Sbjct 1000 ACAAAGGCTTATCTTTGCAGGAACGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 1059 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||| || ||||| ||||| |||||| Sbjct 1060 TATCCAAAAGGAGTCTACCCTTCAT 1084 >seq13269 Length=14915 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || | || ||||| ||||| ||| | || || | | Sbjct 13893 AATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAGAGCTC 13952 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || ||||| ||||||| |||||||| ||| | || | |||| Sbjct 13953 TGATACAATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 14012 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || || || ||||| ||||| || || ||| | ||| |||| || || || Sbjct 14013 ACAGAGGCTGATATTCGCTGGAAAACAGCTCGAGGATGGCAGGACTTTGGCTGACTATAA 14072 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| || |||||||||||| |||| Sbjct 14073 CATCCAGAAAGAGTCTACTCTTCATTTGGT 14102 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || | || || || ||||| ||| | || ||| | | Sbjct 14121 AATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTC 14180 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || |||| ||| ||| ||||| || || | ||| | || Sbjct 14181 TGATACCATAGATAATGTTAAAGCAAAGATTCAAGATAAGGAAGGGATTCCTCCGGATCA 14240 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| |||||||| || ||| ||| |||| |||||||| Sbjct 14241 GCAGAGGCTCATCTTTGCTGGAAAACAACTTGAGGATGGCCGCACTCTGGCTGATTACAA 14300 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||| || || ||| | || | ||| | || || || Sbjct 14301 TATTCAGAAGGAATCAACACTCCATCTTGTTCTCCGTCTTCGTGGTGG 14348 >seq3871 Length=46552 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || || || || |||||||| ||| |||| ||| | | Sbjct 27095 AATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 27154 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || || || || || ||| | || || |||| Sbjct 27155 AGGCACTATTGACAATGTCAAGGCTAAGATACAAGACAAGGAAGGTATCCCACTAGACCA 27214 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || |||||||||| || || ||||| |||||| || ||| | | |||||||| Sbjct 27215 ACAAAGGCTTATCTTTGTAGGAAAGCAACTTGAAGATGGAAGGACTCTTGTAGATTACAA 27274 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| || ||||| ||||| |||||| |||| || Sbjct 27275 TATCCAAAAGGAGTCTACCCTTCATCTGGTGTT 27307 >seq50277 Length=901 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| ||||| ||||| |||||||| || |||||| || ||| |||| |||| Sbjct 797 ACCAGCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATT 738 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||||| || ||||| |||||||| || Sbjct 737 ACAATATCCAAAAGGAGTCTACTCTGCA 710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357541731305506