Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq11270 237 3e-57
seq57685 196 9e-45
seq35533 174 3e-38
seq99200 147 4e-30
seq79654 87.8 3e-12
>seq11270
Length=18388
Score = 237 bits (262), Expect = 3e-57
Identities = 574/864 (66%), Gaps = 20/864 (2%)
Strand=Plus/Minus
Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348
|| ||| ||| |||||| |||||||||||||| || ||| ||||||||| ||||
Sbjct 6049 AGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCAGAGG 5990
Query 42349 AGATTGACCTGGCCAAGGAC--ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTT 42406
|| | || || || ||| ||| | |||||| || | || ||| | |
Sbjct 5989 AGGTCGATCTCTCCGGCGACTTACGTCA--CTGGGAAAACCTAACCGACGGCGAGAGGCA 5932
Query 42407 TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCT 42466
||| ||| || | || ||||||||||||||||| |||||||| || ||||| ||
Sbjct 5931 CTTCGTCACTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTTTGGAGAATCT 5872
Query 42467 GGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTC 42524
|||| ||||||||||| ||||| || | ||| ||||| ||| ||||| ||||||
Sbjct 5871 GGCCGGAAGGTTCATGAAGGAGGTCCA--AGTTTCGGAGGCTCGCGCTTTCTATGGCTTC 5814
Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584
||||| || || ||||| | |||||||| ||||| ||||| | || || |||
Sbjct 5813 CAGATTGCGATCGAGAATATCCACTCTGAAATGTACAGTCTCTTGCTCGAGACCTATATC 5754
Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644
||| | | |||| ||| |||||||| | || |||||||| | || ||| | |
Sbjct 5753 AAGGACTCGGCCGAGAAGAACCGGCTGTTCCACGCGATGGAGACCGTTCCTTGCGTGGCG 5694
Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704
|||||||| || ||||| || |||||||| | || | | |||||| |||||||
Sbjct 5693 AAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGG---CGGAGAATCGTTCGCCGAGAGG 5637
Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764
|| | || || || |||||| ||||| |||||||| || |||| | | || ||
Sbjct 5636 CTCATCGCTTTCGCCTGCGTCGAAGGCATTTTCTTCTCCGGTAGCTTCTGCGCGATATTT 5577
Query 42765 TGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
||||| || || | || |||||||| | |||||||| ||||| | ||| |
Sbjct 5576 TGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGAGTTGATCTCGCGA 5517
Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884
||||| || || || | || || || ||||| || | | | ||| || ||||
Sbjct 5516 GACGAAGGCCTCCACTGCGATTTCGCGTGCCTGCTCTACAC------TCTCTTGCGCAAG 5463
Query 42885 CCCTCGA---AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941
|| ||||||| || || ||| | || || ||||| || |||| ||||
Sbjct 5462 AAGCTGAGCGAGGAGCGCGTGAAGGGGATCGTTCGCGACGCGGTGGATATAGAGAGGGAG 5403
Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001
|| | | |||||||| | |||| || |||||| ||| || ||| || ||
Sbjct 5402 TTTGTGTGCGACGCGCTGCCCTGCGCGTTGGTTGGGATGAACGGCGATCTGATGAGCCAG 5343
Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061
|||||| ||| || || ||| || || || | |||| || |||||||
Sbjct 5342 TACATCGAGTTTGTGGCTGACAGGCTTTTGGGCGCGTTGGGGTGTGGCAAAATCTACAAT 5283
Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121
| | ||| || || | |||||| || |||||| | || |||||||| || |||
Sbjct 5282 GTTCAGAACCCATTTGATTGGATGGAGCTGATTTCGTTGCAAGGAAAGACCAATTTCTTC 5223
Query 43122 GAGAAGCGCGTCGCCGACTACCAG 43145
|||||| | || | || ||||||
Sbjct 5222 GAGAAGAGAGTTGGGGAGTACCAG 5199
>seq57685
Length=1792
Score = 196 bits (216), Expect = 9e-45
Identities = 847/1324 (64%), Gaps = 53/1324 (4%)
Strand=Plus/Plus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || ||||| ||||| || | || || || || ||| | |||| || ||
Sbjct 372 GTTGACGACCTGGAACTCGCCGGCCAAGACACGACGAGAGTAAATGTTGGAAGTGTATGG 431
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||||| || ||| || ||||| ||||||| || ||||||||||| || | ||
Sbjct 432 CTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTCGAGGCAGTCGGCATAGGTGCGAC 491
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTG-GATGCGGAGTCT-GAGCTCGTTCCAGTCC 244267
|| ||| || | |||||||| || | ||| | || || ||| |||||||||||
Sbjct 492 AAGAAGAGAATTTCGGACGCCGTGG-TCAGCGAT-CTTAGCCTTGAGAGCGTTCCAGTCC 549
Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327
|| |||||| | | | | ||||||||||| | || ||| | |||||
Sbjct 550 CA---------GAGGTCAGTGGGAGTCACACCCCACATGTCGTATTGAAGCT-CGCCTTG 599
Query 244328 CTGA-CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT 244386
| | | || ||||||||||||| ||| ||||| | ||||| | ||
Sbjct 600 CGAAACAGGAGAGCCCTCGTAGGTCTCGTAAGGACCAAGTTCTTTGGCCAAATCGCACGA 659
Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT- 244445
| ||| || |||| ||||||||||||||||||| |||| | | || ||||
Sbjct 660 GGCAGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGTTGACGAGCCTC 719
Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505
|| | || ||| || |||| || || ||| | || || || || ||||| || |
Sbjct 720 TGGAG-AGTCGAATGGCATGCGCAGAGCCAAGAATGCATCCGCGAGACCTTGCACACCAA 778
Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTTCGGGCACGGGGTAAAAGT 244562
||||| || | ||| ||| | ||||| | || || || ||||| || || |
Sbjct 779 GACCGATAGGGCGGTGACGCATATTGGA---CTTGCGAGCCTCAGGCACTGGATAGTGAT 835
Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622
|| || ||| | |||||| ||||| | || | | ||||| || ||| |
Sbjct 836 TGATGTTGATGATCTTGTTCAGGTTCTTGACGACGACCTGAACGACTTCATGGAGCTTTT 895
Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGC 244680
| |||||| | | || | ||| ||| || || | || | || ||
Sbjct 896 GGAAGTCGAAA------GACTCGTTGGCCATGTCGA------CATAG--GTAGGAAGTGC 941
Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740
| |||| |||||| || || ||||| || | || |||| | ||||| ||
Sbjct 942 CAGAGAAGCCAAGTTGCAAACAGCAACCTCATCAGGAGCAGTATACTCAATGATCTCTGT 1001
Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800
|||||| || || ||| || |||| || |||||| ||| |||||| ||
Sbjct 1002 GCAGAGATTGGAGCTGCGAATGACACCGAGGTTCTTCTGATTGCTTTTGCGGTTGCAAGC 1061
Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860
|| |||||||||||||| || || ||||| ||| || |||||| | || |||
Sbjct 1062 ATCTTTGTAGAGCATGAAAGGATTGCCAGTCTCTGTCTGAGCCTCGAGGATGGCGTACCA 1121
Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920
|| | | || || ||| ||| | ||||| |||||| | |||| ||
Sbjct 1122 TAGCTTCTGTGCGCGAACGGTCTCACGACCACGACCCTCCTTCTCGTACTTGTTGTAGAG 1181
Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980
||||||||||| ||| |||| || | || || |||||| ||||||||| ||
Sbjct 1182 AGCCTCGAACTCATCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAG 1241
Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040
|||| || || | || ||| | || |||||| || ||||| |||||||| || |
Sbjct 1242 CGTCCAATCTCCATTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGCATA 1301
Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100
||||||||| | | | ||| ||| ||| |||||| | || |||| ||| |
Sbjct 1302 GAAGAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGC 1361
Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160
||||| || ||||||| ||||| | ||| | || | ||||||||| |||||||||||
Sbjct 1362 GAAGACATCAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGGGACGCTTGTTGCC 1421
Query 245161 TCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGC 245216
|| ||||| | | | ||||| |||||||| || || | || || | |
Sbjct 1422 ACCTTGGTCGA----CATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGAC 1477
Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGA 245273
| || || ||| |||||||| ||||| | || | || | || ||| |
Sbjct 1478 CATTGGATGTGCCATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGAACGT 1537
Query 245274 TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333
|| || || | ||||| || | ||| ||||| | |||||| |||||| || ||
Sbjct 1538 TGAAC---CCGATGCCGCCAGCATTCTTCGAGATCATTGCGCAGGTCTTGAGTGTATCGT 1594
Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCT 245393
|| ||||| ||||||||| ||| | || || || |||||||||| |||||| || |
Sbjct 1595 AGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGT 1654
Query 245394 TGGG 245397
||||
Sbjct 1655 TGGG 1658
>seq35533
Length=2598
Score = 174 bits (192), Expect = 3e-38
Identities = 262/363 (72%), Gaps = 11/363 (3%)
Strand=Plus/Minus
Query 42762 TTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820
|||||||||||| || ||| || ||||| || ||||||||||| ||||| ||||||
Sbjct 2598 TTCTGGCTCAAGAAGCGTGGTCTC-ATGCCTGGTCTCACCTTCTCCAACGAGCTCATCTC 2540
Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880
| |||||||| |||| | ||||| || ||| | || | ||| ||||| | |
Sbjct 2539 TCGTGACGAGGGCATGCACACTGACTTCGCTTGCTTGCTCTACTCA---CACCTGCAGAA 2483
Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940
|||||| | ||| || || | ||||||||| |||||||| | |||||| | ||
Sbjct 2482 GAAGCCCGACACACAGCTCGTACGCGACATCATCACAGAGGCCGTCGCCATCGAGCAAGA 2423
Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999
||||||||| | | |||||| ||| |||| ||||||||||| | || ||||||
Sbjct 2422 GTTCCTCACTGATGCTCTGCCC-TGTGCCCTACTCGGCATGAACGCCACACTTATGTGCC 2364
Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTCAGCCGCCTCTA 43057
|||||||| | | |||||| |||| || || || ||| | ||||||| | |||
Sbjct 2363 AGTACATCGAATTCGTCGCAGACCGCCTTCTCGTCGCC--CTCGGTCTCACAAAGCACTA 2306
Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117
|||| | || || ||||| || ||||| ||||||||| || | ||||||||||||||
Sbjct 2305 CAACGTTACATGTCCATTCGATTTCATGGACAACATCTCGCTGAATGGCAAGACCAACTT 2246
Query 43118 TTT 43120
||
Sbjct 2245 CTT 2243
>seq99200
Length=725
Score = 147 bits (162), Expect = 4e-30
Identities = 305/443 (69%), Gaps = 12/443 (3%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| || |||||||| ||||||||||| || ||||| |||||||| | | || ||| |
Sbjct 644 CTTGCTTTCTTCGCTGCCTCTGACGGTATTGTCAACGAGAACCTTGTCGAGAGATTCTCG 585
Query 42483 AAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541
|||||||| |||| ||||| || ||||| || || |||||||| || |||||
Sbjct 584 GGTGAGGTGCAAGTACCA-GAGGCTCGATGCTTTTATGGTTTCCAGATCATGATGGAGAA 526
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA-GC 42600
| ||||| || ||||| | |||||| ||||| || | | | ||
Sbjct 525 TATCCACTCCGAAATGTACAGCT---TGCTCATTGA-TACATTTGTGAAAGAGCCAAAGC 470
Query 42601 -GTAACGGG--CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657
| ||| | || ||| | || || || || || || |||||| |||||||| || |
Sbjct 469 AGAAACAGTACCTCTTCGATGCTATCGACACTATTCCATGCATCCGCAAGAAGGCTGAGT 410
Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717
||||| | | |||||| | || | |||| | | | ||||| || ||
Sbjct 409 GGGCGTTGAGATGGATCTCTGATAAGGAAAGCAGTTTCGCCCAACGTCTGGTGGCATTCG 350
Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777
||||||| ||||||||||||||||| || | ||||||||||| |||||||||||| |||
Sbjct 349 CCGCCGTTGAGGGCATCTTCTTCTCCGGGTCTTTCGCCTCCATTTTCTGGCTCAAGAAGA 290
Query 42778 -AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836
|||| || ||||| || || || ||||| ||||| || ||| | || || || ||
Sbjct 289 GAGGTCTC-ATGCCTGGTCTGACATTCTCCAACGAGCTGATCTCTCGTGATGAAGGTATG 231
Query 42837 CATAGGGACTTTGCCTGCCTCCT 42859
|| | || || |||||||| ||
Sbjct 230 CACACAGATTTCGCCTGCCTGCT 208
>seq79654
Length=1036
Score = 87.8 bits (96), Expect = 3e-12
Identities = 202/297 (68%), Gaps = 8/297 (3%)
Strand=Plus/Plus
Query 243869 AGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTG 243928
|| || |||||||| |||||||||||||||| | | |||| |||| | || || | | |
Sbjct 276 AGGAACAGGTTGAGCGACTGGCTCTGGTCGATGTACGGCGACCGCGCCGCCGCGAGGTCG 335
Query 243929 ATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGG 243988
||||| ||||||| | | || ||||||| |||||| | ||||| || |||||
Sbjct 336 ATGAGCGCCTTCTGCGGCAGTTCCCACGCCGTGCGGTAGATCGCCTTGACGTCGTCGGGC 395
Query 243989 AACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT-GCGCATGTTATC 244047
| ||| ||| ||||||||| |||| | | ||| | | | || ||| | | |
Sbjct 396 AGCCCGACGAGCCCCTGCACCGACCCCTCG-GAACGCTTGACGGCGTCGCGGGTCTCGGC 454
Query 244048 GTTCCACAGGCCCAAGCG-CTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACT 244106
|||| | |||| |||| || ||| | ||||| ||||| ||| | | ||||
Sbjct 455 CGTCCAGA-GCCCGAGCGCCTTGAGCTCGCGCACCAGCGAGCTGTTGACCTGCAGGAACT 513
Query 244107 CTCCCGACAGCACGCGGCGCTGGTAGAGGTTG--CTGCTGAGCGGCTCGATGCTCTC 244161
| ||||| ||| ||||| | | |||||| | || |||||||||||| |||
Sbjct 514 CCCCCGAGAGCGTCTCGCGCTTGAACAGGTTGGACACCT--GCGGCTCGATGCACTC 568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 942762283382640
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