Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11270 237 3e-57 seq57685 196 9e-45 seq35533 174 3e-38 seq99200 147 4e-30 seq79654 87.8 3e-12 >seq11270 Length=18388 Score = 237 bits (262), Expect = 3e-57 Identities = 574/864 (66%), Gaps = 20/864 (2%) Strand=Plus/Minus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || ||| ||| |||||| |||||||||||||| || ||| ||||||||| |||| Sbjct 6049 AGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCAGAGG 5990 Query 42349 AGATTGACCTGGCCAAGGAC--ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTT 42406 || | || || || ||| ||| | |||||| || | || ||| | | Sbjct 5989 AGGTCGATCTCTCCGGCGACTTACGTCA--CTGGGAAAACCTAACCGACGGCGAGAGGCA 5932 Query 42407 TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCT 42466 ||| ||| || | || ||||||||||||||||| |||||||| || ||||| || Sbjct 5931 CTTCGTCACTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTTTGGAGAATCT 5872 Query 42467 GGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTC 42524 |||| ||||||||||| ||||| || | ||| ||||| ||| ||||| |||||| Sbjct 5871 GGCCGGAAGGTTCATGAAGGAGGTCCA--AGTTTCGGAGGCTCGCGCTTTCTATGGCTTC 5814 Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 ||||| || || ||||| | |||||||| ||||| ||||| | || || ||| Sbjct 5813 CAGATTGCGATCGAGAATATCCACTCTGAAATGTACAGTCTCTTGCTCGAGACCTATATC 5754 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 ||| | | |||| ||| |||||||| | || |||||||| | || ||| | | Sbjct 5753 AAGGACTCGGCCGAGAAGAACCGGCTGTTCCACGCGATGGAGACCGTTCCTTGCGTGGCG 5694 Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 |||||||| || ||||| || |||||||| | || | | |||||| ||||||| Sbjct 5693 AAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGG---CGGAGAATCGTTCGCCGAGAGG 5637 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 || | || || || |||||| ||||| |||||||| || |||| | | || || Sbjct 5636 CTCATCGCTTTCGCCTGCGTCGAAGGCATTTTCTTCTCCGGTAGCTTCTGCGCGATATTT 5577 Query 42765 TGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 ||||| || || | || |||||||| | |||||||| ||||| | ||| | Sbjct 5576 TGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGAGTTGATCTCGCGA 5517 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 ||||| || || || | || || || ||||| || | | | ||| || |||| Sbjct 5516 GACGAAGGCCTCCACTGCGATTTCGCGTGCCTGCTCTACAC------TCTCTTGCGCAAG 5463 Query 42885 CCCTCGA---AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 || ||||||| || || ||| | || || ||||| || |||| |||| Sbjct 5462 AAGCTGAGCGAGGAGCGCGTGAAGGGGATCGTTCGCGACGCGGTGGATATAGAGAGGGAG 5403 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 || | | |||||||| | |||| || |||||| ||| || ||| || || Sbjct 5402 TTTGTGTGCGACGCGCTGCCCTGCGCGTTGGTTGGGATGAACGGCGATCTGATGAGCCAG 5343 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 |||||| ||| || || ||| || || || | |||| || ||||||| Sbjct 5342 TACATCGAGTTTGTGGCTGACAGGCTTTTGGGCGCGTTGGGGTGTGGCAAAATCTACAAT 5283 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 | | ||| || || | |||||| || |||||| | || |||||||| || ||| Sbjct 5282 GTTCAGAACCCATTTGATTGGATGGAGCTGATTTCGTTGCAAGGAAAGACCAATTTCTTC 5223 Query 43122 GAGAAGCGCGTCGCCGACTACCAG 43145 |||||| | || | || |||||| Sbjct 5222 GAGAAGAGAGTTGGGGAGTACCAG 5199 >seq57685 Length=1792 Score = 196 bits (216), Expect = 9e-45 Identities = 847/1324 (64%), Gaps = 53/1324 (4%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || || ||| | |||| || || Sbjct 372 GTTGACGACCTGGAACTCGCCGGCCAAGACACGACGAGAGTAAATGTTGGAAGTGTATGG 431 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| || ||||| ||||||| || ||||||||||| || | || Sbjct 432 CTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTCGAGGCAGTCGGCATAGGTGCGAC 491 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTG-GATGCGGAGTCT-GAGCTCGTTCCAGTCC 244267 || ||| || | |||||||| || | ||| | || || ||| ||||||||||| Sbjct 492 AAGAAGAGAATTTCGGACGCCGTGG-TCAGCGAT-CTTAGCCTTGAGAGCGTTCCAGTCC 549 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || |||||| | | | | ||||||||||| | || ||| | ||||| Sbjct 550 CA---------GAGGTCAGTGGGAGTCACACCCCACATGTCGTATTGAAGCT-CGCCTTG 599 Query 244328 CTGA-CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT 244386 | | | || ||||||||||||| ||| ||||| | ||||| | || Sbjct 600 CGAAACAGGAGAGCCCTCGTAGGTCTCGTAAGGACCAAGTTCTTTGGCCAAATCGCACGA 659 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT- 244445 | ||| || |||| ||||||||||||||||||| |||| | | || |||| Sbjct 660 GGCAGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGTTGACGAGCCTC 719 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 || | || ||| || |||| || || ||| | || || || || ||||| || | Sbjct 720 TGGAG-AGTCGAATGGCATGCGCAGAGCCAAGAATGCATCCGCGAGACCTTGCACACCAA 778 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTTCGGGCACGGGGTAAAAGT 244562 ||||| || | ||| ||| | ||||| | || || || ||||| || || | Sbjct 779 GACCGATAGGGCGGTGACGCATATTGGA---CTTGCGAGCCTCAGGCACTGGATAGTGAT 835 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622 || || ||| | |||||| ||||| | || | | ||||| || ||| | Sbjct 836 TGATGTTGATGATCTTGTTCAGGTTCTTGACGACGACCTGAACGACTTCATGGAGCTTTT 895 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGC 244680 | |||||| | | || | ||| ||| || || | || | || || Sbjct 896 GGAAGTCGAAA------GACTCGTTGGCCATGTCGA------CATAG--GTAGGAAGTGC 941 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 | |||| |||||| || || ||||| || | || |||| | ||||| || Sbjct 942 CAGAGAAGCCAAGTTGCAAACAGCAACCTCATCAGGAGCAGTATACTCAATGATCTCTGT 1001 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 |||||| || || ||| || |||| || |||||| ||| |||||| || Sbjct 1002 GCAGAGATTGGAGCTGCGAATGACACCGAGGTTCTTCTGATTGCTTTTGCGGTTGCAAGC 1061 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 || |||||||||||||| || || ||||| ||| || |||||| | || ||| Sbjct 1062 ATCTTTGTAGAGCATGAAAGGATTGCCAGTCTCTGTCTGAGCCTCGAGGATGGCGTACCA 1121 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 || | | || || ||| ||| | ||||| |||||| | |||| || Sbjct 1122 TAGCTTCTGTGCGCGAACGGTCTCACGACCACGACCCTCCTTCTCGTACTTGTTGTAGAG 1181 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 ||||||||||| ||| |||| || | || || |||||| ||||||||| || Sbjct 1182 AGCCTCGAACTCATCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAG 1241 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 |||| || || | || ||| | || |||||| || ||||| |||||||| || | Sbjct 1242 CGTCCAATCTCCATTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGCATA 1301 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 ||||||||| | | | ||| ||| ||| |||||| | || |||| ||| | Sbjct 1302 GAAGAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGC 1361 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 ||||| || ||||||| ||||| | ||| | || | ||||||||| ||||||||||| Sbjct 1362 GAAGACATCAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGGGACGCTTGTTGCC 1421 Query 245161 TCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGC 245216 || ||||| | | | ||||| |||||||| || || | || || | | Sbjct 1422 ACCTTGGTCGA----CATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGAC 1477 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGA 245273 | || || ||| |||||||| ||||| | || | || | || ||| | Sbjct 1478 CATTGGATGTGCCATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGAACGT 1537 Query 245274 TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 || || || | ||||| || | ||| ||||| | |||||| |||||| || || Sbjct 1538 TGAAC---CCGATGCCGCCAGCATTCTTCGAGATCATTGCGCAGGTCTTGAGTGTATCGT 1594 Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCT 245393 || ||||| ||||||||| ||| | || || || |||||||||| |||||| || | Sbjct 1595 AGATACCCTCGATGCTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGT 1654 Query 245394 TGGG 245397 |||| Sbjct 1655 TGGG 1658 >seq35533 Length=2598 Score = 174 bits (192), Expect = 3e-38 Identities = 262/363 (72%), Gaps = 11/363 (3%) Strand=Plus/Minus Query 42762 TTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 |||||||||||| || ||| || ||||| || ||||||||||| ||||| |||||| Sbjct 2598 TTCTGGCTCAAGAAGCGTGGTCTC-ATGCCTGGTCTCACCTTCTCCAACGAGCTCATCTC 2540 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 | |||||||| |||| | ||||| || ||| | || | ||| ||||| | | Sbjct 2539 TCGTGACGAGGGCATGCACACTGACTTCGCTTGCTTGCTCTACTCA---CACCTGCAGAA 2483 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 |||||| | ||| || || | ||||||||| |||||||| | |||||| | || Sbjct 2482 GAAGCCCGACACACAGCTCGTACGCGACATCATCACAGAGGCCGTCGCCATCGAGCAAGA 2423 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||||||| | | |||||| ||| |||| ||||||||||| | || |||||| Sbjct 2422 GTTCCTCACTGATGCTCTGCCC-TGTGCCCTACTCGGCATGAACGCCACACTTATGTGCC 2364 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTCAGCCGCCTCTA 43057 |||||||| | | |||||| |||| || || || ||| | ||||||| | ||| Sbjct 2363 AGTACATCGAATTCGTCGCAGACCGCCTTCTCGTCGCC--CTCGGTCTCACAAAGCACTA 2306 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| | || || ||||| || ||||| ||||||||| || | |||||||||||||| Sbjct 2305 CAACGTTACATGTCCATTCGATTTCATGGACAACATCTCGCTGAATGGCAAGACCAACTT 2246 Query 43118 TTT 43120 || Sbjct 2245 CTT 2243 >seq99200 Length=725 Score = 147 bits (162), Expect = 4e-30 Identities = 305/443 (69%), Gaps = 12/443 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||| ||||||||||| || ||||| |||||||| | | || ||| | Sbjct 644 CTTGCTTTCTTCGCTGCCTCTGACGGTATTGTCAACGAGAACCTTGTCGAGAGATTCTCG 585 Query 42483 AAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| |||| ||||| || ||||| || || |||||||| || ||||| Sbjct 584 GGTGAGGTGCAAGTACCA-GAGGCTCGATGCTTTTATGGTTTCCAGATCATGATGGAGAA 526 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA-GC 42600 | ||||| || ||||| | |||||| ||||| || | | | || Sbjct 525 TATCCACTCCGAAATGTACAGCT---TGCTCATTGA-TACATTTGTGAAAGAGCCAAAGC 470 Query 42601 -GTAACGGG--CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | ||| | || ||| | || || || || || || |||||| |||||||| || | Sbjct 469 AGAAACAGTACCTCTTCGATGCTATCGACACTATTCCATGCATCCGCAAGAAGGCTGAGT 410 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 ||||| | | |||||| | || | |||| | | | ||||| || || Sbjct 409 GGGCGTTGAGATGGATCTCTGATAAGGAAAGCAGTTTCGCCCAACGTCTGGTGGCATTCG 350 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 ||||||| ||||||||||||||||| || | ||||||||||| |||||||||||| ||| Sbjct 349 CCGCCGTTGAGGGCATCTTCTTCTCCGGGTCTTTCGCCTCCATTTTCTGGCTCAAGAAGA 290 Query 42778 -AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 |||| || ||||| || || || ||||| ||||| || ||| | || || || || Sbjct 289 GAGGTCTC-ATGCCTGGTCTGACATTCTCCAACGAGCTGATCTCTCGTGATGAAGGTATG 231 Query 42837 CATAGGGACTTTGCCTGCCTCCT 42859 || | || || |||||||| || Sbjct 230 CACACAGATTTCGCCTGCCTGCT 208 >seq79654 Length=1036 Score = 87.8 bits (96), Expect = 3e-12 Identities = 202/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 243869 AGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTG 243928 || || |||||||| |||||||||||||||| | | |||| |||| | || || | | | Sbjct 276 AGGAACAGGTTGAGCGACTGGCTCTGGTCGATGTACGGCGACCGCGCCGCCGCGAGGTCG 335 Query 243929 ATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGG 243988 ||||| ||||||| | | || ||||||| |||||| | ||||| || ||||| Sbjct 336 ATGAGCGCCTTCTGCGGCAGTTCCCACGCCGTGCGGTAGATCGCCTTGACGTCGTCGGGC 395 Query 243989 AACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT-GCGCATGTTATC 244047 | ||| ||| ||||||||| |||| | | ||| | | | || ||| | | | Sbjct 396 AGCCCGACGAGCCCCTGCACCGACCCCTCG-GAACGCTTGACGGCGTCGCGGGTCTCGGC 454 Query 244048 GTTCCACAGGCCCAAGCG-CTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACT 244106 |||| | |||| |||| || ||| | ||||| ||||| ||| | | |||| Sbjct 455 CGTCCAGA-GCCCGAGCGCCTTGAGCTCGCGCACCAGCGAGCTGTTGACCTGCAGGAACT 513 Query 244107 CTCCCGACAGCACGCGGCGCTGGTAGAGGTTG--CTGCTGAGCGGCTCGATGCTCTC 244161 | ||||| ||| ||||| | | |||||| | || |||||||||||| ||| Sbjct 514 CCCCCGAGAGCGTCTCGCGCTTGAACAGGTTGGACACCT--GCGGCTCGATGCACTC 568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942762283382640