Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_009447.1 Length=52414 Score E Sequences producing significant alignments: (Bits) Value seq112765 147 7e-31 seq108880 80.6 9e-11 >seq112765 Length=571 Score = 147 bits (162), Expect = 7e-31 Identities = 293/429 (68%), Gaps = 5/429 (1%) Strand=Plus/Plus Query 29318 ACCCGGCGTATTCACGCCGCGTGACTCCATGCACATGTGGCGAGCATTGATCGTG-ACGT 29376 ||||||||| | |||||| ||||||||||| ||||| ||| | || ||| Sbjct 23 ACCCGGCGTGCGGATGCCGCGGCTTTCCATGCACATATGGCG-GCAGCGTACGACCACGC 81 Query 29377 AAACCGCGCGCGGCTGAACGTGTTGGGCCAGCGCATCCGCGATCTGGTTCGTCAGGCGCT 29436 || || ||||| || ||| ||| || | || |||||| |||||| ||||| Sbjct 82 CGACTGCTTTCGGCTCAAGCACTTGCATCAGTGCGTTGGCAATCTGGATCGTCATGCGCT 141 Query 29437 CTTGAACTTGCAGGCGCTTGGCGAAAATGTCTGCCAGCCGCTTGAGCTTCGAAATACCGA 29496 | || || ||||||||||| | ||||||| |||| || | |||||||| | |||| Sbjct 142 CCTGCACCTGCAGGCGCTTCGAATAAATGTCGACCAGGCGGGTCAGCTTCGACAGGCCGA 201 Query 29497 CGACTTTGCCGCTCGGGATATAGCCGATATGGGCCGTTCCCATGATCGCCGCCATATGGT 29556 | | || || | || | ||| || || ||| | || | | || ||||| |||| Sbjct 202 CAATCTTTCCCTTAGGCAGATAACCAATCGTGGCTTTGCCGAAAAACGGCGCCAGGTGGT 261 Query 29557 GTTCGCAGTGCGAATAGATCGGGATATCGCGAACGATAATCCAGTCGTCGGAGCCTTCCG 29616 ||||||| || |||| ||||| |||| |||| ||| | |||| | |||| | Sbjct 262 GTTCGCAATGGCTGTAGACAGGGATGCCGCGCACGACGATCAACTCGTTATATTCTTCGG 321 Query 29617 CGCCATCCTCGAACACCTTGAGCACTTCGGCCGGGTCGTGCATATAGCCCGCCGCCCATG 29676 ||||||| || ||| |||| | |||||| |||| || || |||||||| | ||| | Sbjct 322 CGCCATCTTCAAACGCCTTCAATACTTCGACCGGATCCTGGCCATAGCCCGAGGTCCA-G 380 Query 29677 ACGACAACCACGCCTTGACGACTCGCTTCGGCGTTTCGCGCAAGCCTTCGCGGTCGATGT 29736 | ||| |||||| |||| ||| ||| |||||| ||| || ||||||| || Sbjct 381 TGTTC--CCAAGCCTTGGCGACACGCGCCGGGGTTTCGTGCAGACCGGGGCGGTCGGGGT 438 Query 29737 CTTCGCCGA 29745 ||||||||| Sbjct 439 CTTCGCCGA 447 >seq108880 Length=613 Score = 80.6 bits (88), Expect = 9e-11 Identities = 129/184 (70%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 29412 TCCGCGATCTGGTTCGTCAGGCGCTCTTGAACTTGCAGGCGCTTGGCGAAAATGTCTGCC 29471 ||||||||||| ||||| ||| || ||||||||||||||||| || || Sbjct 311 TCCGCGATCTGCGCCGTCATCGTCTCCTGCGTCTGCAGGCGCTTGGCGAAGGCATCGACC 370 Query 29472 AGCCGCTTGAGCTTCGAAATACCGACGACTTTGCC---GCTCGGGATATAGCCGATATGG 29528 | || ||||||||| | ||||| || ||| | |||| |||| ||||||| Sbjct 371 ACGCGGGCGAGCTTCGACAGGCCGACCAC---GCCCTTGGACGGGTAATAGGCGATATGC 427 Query 29529 GCCGTTCCCATGATCGCCGCCATATGGTGTTCGCAGTGCGAATAGATCGGGATATCGCGA 29588 ||| ||||||| || | |||| ||||| ||||| || || | || |||||| || || Sbjct 428 GCCAGCCCCATGAACGGCACCATGTGGTGCTCGCAATGGGAGTGGAACGGGATGTCCCGC 487 Query 29589 ACGA 29592 |||| Sbjct 488 ACGA 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167337319416368