Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq8957 93.3 3e-14
seq3441 91.5 1e-13
seq13269 87.8 1e-12
seq10846 84.2 2e-11
>seq8957
Length=24100
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/237 (68%), Gaps = 18/237 (8%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| | |||| ||||||||| || || || ||||||||||||||||||||| ||
Sbjct 15278 ACCTCCACGGAGCCTCAGCACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCAGC 15337
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| || |||| || |||||||| ||||| || || || | |||||| ||| ||
Sbjct 15338 GAGGGTGCGGCCGTCCTCTAATTGCTTCCCGGCGAAGATTAGCCTCTGCTGGTCCGGTGG 15397
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC--- 34076
| | ||| ||||| ||| | ||| | ||| ||||| | | ||
Sbjct 15398 AATCCCCTCCTTGTC---------TTGAATCTTGGCCTTGACATTATCAATCGTGTCGGA 15448
Query 34077 GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || ||| || || |||||||| ||||| |||||||||||||| |||||
Sbjct 15449 GCTCTCTACCTCCAAGGTAATCGTTTTTCCAGTTAGGGTTTTCACAAAGATCTGCAT 15505
>seq3441
Length=50379
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || ||||||| ||||| || ||||| || || || ||||| ||
Sbjct 14147 CCACCACGCAGACGAAGCACCAAGTGAAGTGTCGATTCCTTTTGGATATTATAATCAGCA 14206
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | || ||| | || |||| |||||||| ||||||||||| | |||||| ||| ||
Sbjct 14207 AGAGTG-CGCCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCCGGAGG 14265
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079
| | ||||||||| || ||| ||| | | | | |||||| | |||
Sbjct 14266 GATCCCCTCTTTGTCTTGTATCTTTGCCTTGACATTATCAATAGTATCAGAACTTTCAAC 14325
Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128
||| | ||||| |||||||| || | || |||||||| |||||||||
Sbjct 14326 TTCCAATGTTATAGTTTTTCCAGTCAAGGTCTTCACAAAAATTTGCATT 14374
>seq13269
Length=14915
Score = 87.8 bits (96), Expect = 1e-12
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| ||||||| || || |||| || || ||| || ||||| ||||||||||| |||
Sbjct 13436 CCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCAGCC 13377
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| ||| | || ||||| || ||||| ||||| ||||| | |||||| || ||
Sbjct 13376 AAAGTTCGACCATCCTCCAACTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 13317
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTCACACTATCAGTAGAT-TCG 34077
| | ||| |||||| | ||||||||| | | || | |||||| || | |||
Sbjct 13316 ATTCCCTCCTTGTCC-TGTATTTTTGCTTTGACATTATCT-ATTGTATCAG-AGCTCTCG 13260
Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|||| ||||| || ||||| || || ||||| || ||||| |||||
Sbjct 13259 ACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACGAAGATCTGCAT 13210
>seq10846
Length=19378
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||||| || |||||||||| || || || |||||| |||||||||||||| ||
Sbjct 11276 CCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAATCAGCT 11335
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || | || ||||| |||||||| ||||| ||||| | ||| || ||| ||
Sbjct 11336 AAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGG 11395
Query 34021 ACGCTCTCTTTGTC 34034
| | |||||||||
Sbjct 11396 ATACCCTCTTTGTC 11409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396415936378378
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |