Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq8957 93.3 3e-14 seq3441 91.5 1e-13 seq13269 87.8 1e-12 seq10846 84.2 2e-11 >seq8957 Length=24100 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/237 (68%), Gaps = 18/237 (8%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | |||| ||||||||| || || || ||||||||||||||||||||| || Sbjct 15278 ACCTCCACGGAGCCTCAGCACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCAGC 15337 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || |||||||| ||||| || || || | |||||| ||| || Sbjct 15338 GAGGGTGCGGCCGTCCTCTAATTGCTTCCCGGCGAAGATTAGCCTCTGCTGGTCCGGTGG 15397 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC--- 34076 | | ||| ||||| ||| | ||| | ||| ||||| | | || Sbjct 15398 AATCCCCTCCTTGTC---------TTGAATCTTGGCCTTGACATTATCAATCGTGTCGGA 15448 Query 34077 GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||| || || |||||||| ||||| |||||||||||||| ||||| Sbjct 15449 GCTCTCTACCTCCAAGGTAATCGTTTTTCCAGTTAGGGTTTTCACAAAGATCTGCAT 15505 >seq3441 Length=50379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||||| || ||||| || || || ||||| || Sbjct 14147 CCACCACGCAGACGAAGCACCAAGTGAAGTGTCGATTCCTTTTGGATATTATAATCAGCA 14206 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || ||| | || |||| |||||||| ||||||||||| | |||||| ||| || Sbjct 14207 AGAGTG-CGCCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCCGGAGG 14265 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||||||||| || ||| ||| | | | | |||||| | ||| Sbjct 14266 GATCCCCTCTTTGTCTTGTATCTTTGCCTTGACATTATCAATAGTATCAGAACTTTCAAC 14325 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | ||||| |||||||| || | || |||||||| ||||||||| Sbjct 14326 TTCCAATGTTATAGTTTTTCCAGTCAAGGTCTTCACAAAAATTTGCATT 14374 >seq13269 Length=14915 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| || || |||| || || ||| || ||||| ||||||||||| ||| Sbjct 13436 CCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCAGCC 13377 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || ||||| || ||||| ||||| ||||| | |||||| || || Sbjct 13376 AAAGTTCGACCATCCTCCAACTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 13317 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTCACACTATCAGTAGAT-TCG 34077 | | ||| |||||| | ||||||||| | | || | |||||| || | ||| Sbjct 13316 ATTCCCTCCTTGTCC-TGTATTTTTGCTTTGACATTATCT-ATTGTATCAG-AGCTCTCG 13260 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||||| || ||||| || || ||||| || ||||| ||||| Sbjct 13259 ACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACGAAGATCTGCAT 13210 >seq10846 Length=19378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| || |||||||||| || || || |||||| |||||||||||||| || Sbjct 11276 CCTCCTCGCAATCGCAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAATCAGCT 11335 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || ||||| |||||||| ||||| ||||| | ||| || ||| || Sbjct 11336 AAGGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGG 11395 Query 34021 ACGCTCTCTTTGTC 34034 | | ||||||||| Sbjct 11396 ATACCCTCTTTGTC 11409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396415936378378