Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq11270 113 1e-19 >seq11270 Length=18388 Score = 113 bits (124), Expect = 1e-19 Identities = 556/868 (64%), Gaps = 33/868 (4%) Strand=Plus/Minus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| || ||||| ||||| || ||||| ||||| |||||||| | ||| Sbjct 6067 TCTGCATGTTCCCGATTCAGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCCT 6008 Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCAGACGT-CGTCGACTGGCGCGAGAAA 242985 | || |||||| | ||||| || ||| || ||| | |||| ||||| || || Sbjct 6007 CGTTCTGGACCGCAGAGGAGGTCGATCTCTCCGGCGACTTACGTC-ACTGG---GAAAAC 5952 Query 242986 CTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGAT 243045 || | |||| ||| | || ||| ||| ||| | || | || ||||| | |||||| Sbjct 5951 CTAACCGACGGCGAGAGGCACTTCGTCACTCACGTGCTCGCCTTCTTCGCCGCCTCCGAC 5892 Query 243046 GGTATTGTGATGGAAAATCTGCAGACC-AACTTTAGTGT-GGAAGTAACGGTTCCAGAGG 243103 || || || |||| |||||| | | || || || ||| || ||| | |||| Sbjct 5891 GGCATCGTTTTGGAGAATCTG--GCCGGAAGGTTCATGAAGGAGGTCCAAGTTTCGGAGG 5834 Query 243104 CACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTC 243163 | || || |||| | ||| | | ||| |||||| |||||| || || Sbjct 5833 CTCGCGCTTTCTATGGCTTCCAGATTGCGATCGAGAATATCCACTCTGAAATGTACAGTC 5774 Query 243164 TTCTTATCGACGCGCTTATTTCAGATGAACAAGAGCGAAACGA----GCTTTTCGACGCC 243219 | | |||| | ||| ||| | || | ||| | || ||| ||| |||| Sbjct 5773 TCTTGCTCGAGACC--TATATCAA--GGACTCGGCCGAGAAGAACCGGCTGTTCCACGCG 5718 Query 243220 ATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCC 243279 || || | | |||| || || ||||| | ||||| | | |||| | || | Sbjct 5717 ATGGAGACCGTTCCTTGCGTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGC 5658 Query 243280 GGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCC 243339 || |||| || || ||| | ||| |||| | | ||||| ||||| ||| | || ||| Sbjct 5657 GGAGAATCGTTCGCCGAGAGGCTCATCGCTTTCGCCTGCGTCGAAGGCATTTTCTTCTCC 5598 Query 243340 GGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGG 243395 || || |||||||| || |||||||| || |||| | | ||||| || | Sbjct 5597 GGTAGCTTCTGCGCGATATTTTGGCT----AAAAAAGCGCGGGTTAATGCCCGGGTTAAC 5542 Query 243396 TCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTA 243454 | || |||||||| ||| || ||||| ||||| ||| | |||| ||| || Sbjct 5541 CTTCTCCAACGAGTTGATCTCGCGAGACGAAGGCCTCCACTGCGATTTCGCGTGC-CTGC 5483 Query 243455 TGTATTCAAAGCTCCAGAACAAGCT-ACCATTCGAAACG-GTCAAACAAATCATCACAGA 243512 | || | | | || ||||| | | | | || || || ||| | || Sbjct 5482 TCTACACTCTCTTGCGCAAGAAGCTGAGCGA--GGAGCGCGTGAAGGGGATCGTTCGCGA 5425 Query 243513 AGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCAT 243572 || || || | || | ||| || | |||||||| | || ||| | | |||| || Sbjct 5424 CGCGGTGGATATAGAGAGGGAGTTTGTGTGCGACGCGCTGCCCTGCGCGTTGGTTGGGAT 5365 Query 243573 GAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCT 243632 |||| || || ||| | ||||||||||| || || || ||| | |||| |||| | Sbjct 5364 GAACGGCGATCTGATGAGCCAGTACATCGAGTTTGTGGCTGACAGGCTTTTGGGCGCGTT 5305 Query 243633 TGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCT 243692 || | || ||| | ||||| ||||||| |||| | |||||||| |||||| | Sbjct 5304 GGGGTGTGGCAAAATCTACAATGTTCAGAACCCATTTGATTGGATGGAGCTGATTTCGTT 5245 Query 243693 TCAAGGGAAAACTAACTTCTTCGAAAAG 243720 ||||| || || || |||||||| ||| Sbjct 5244 GCAAGGAAAGACCAATTTCTTCGAGAAG 5217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1100992300597150