Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_009993.2 Length=53746 Score E Sequences producing significant alignments: (Bits) Value seq79087 104 8e-18 seq72395 102 3e-17 seq95122 86.0 2e-12 seq99115 84.2 8e-12 >seq79087 Length=1043 Score = 104 bits (114), Expect = 8e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 15209 CGAATCCGGCGGCAACTGGGCGATCAACACCGGCAACGGGTACTACGGCGGGTTGCAGTT 15268 ||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| Sbjct 753 CGAGTCCGGCGGCAACTGGTCGATCAACACCGGCAACGGCTACTACGGCGGGCTGCAGTT 694 Query 15269 CGACCAACCGACCTGGGACGCCTAC 15293 | ||| | ||||||| ||| ||| Sbjct 693 CAACCTGCAGACCTGGCGCGCGTAC 669 >seq72395 Length=1210 Score = 102 bits (112), Expect = 3e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 15189 TGGGATGCCATCGCGCAGGCCGAATCCGGCGGCAACTGGGCGATCAACACCGGCAACGGG 15248 |||||||| ||||||||| ||| ||| ||| ||||| ||||||||||||| |||||| Sbjct 92 TGGGATGCGATCGCGCAGTGCGAGAGCGGGGGCGACTGGTCGATCAACACCGGGAACGGG 33 Query 15249 TACTACGGCGGGTTGCAGTTC 15269 ||||||||||||||||||||| Sbjct 32 TACTACGGCGGGTTGCAGTTC 12 >seq95122 Length=780 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 15209 CGAATCCGGCGGCAACTGGGCGATCAACACCGGCAACGGGTACTACGGCGGGTTGCAGTT 15268 ||| || |||||||||||| ||| |||||||||||||||||||||||||| ||||||| Sbjct 345 CGAGTCGGGCGGCAACTGGAGCATCGACACCGGCAACGGGTACTACGGCGGGCTGCAGTT 404 Query 15269 CGACCAACCGACCTGGGACGCCTAC 15293 | || |||| ||| || ||||| Sbjct 405 CAGCCTCTCGACGTGGCACTCCTAC 429 >seq99115 Length=726 Score = 84.2 bits (92), Expect = 8e-12 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 25134 TGACTGGGGGTCAAGGGGTCGCAGGTTCAAATCCTGTCAGCCCGAC 25179 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 207 TGACTGGGGGTCAAGGGGTCGCAGGTTCAAATCCTGTCAGCCCGAC 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171592957675544