Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_010355.1 Length=62337 Score E Sequences producing significant alignments: (Bits) Value seq86895 109 2e-19 seq88363 100 1e-16 seq110152 96.9 1e-15 >seq86895 Length=897 Score = 109 bits (120), Expect = 2e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 22397 ACCCTGCTCGGCTCCCCGGTCTATCAGGCTGCGGACATGCCGGCGGTTGGCGCGGGCGCC 22456 ||||||||||||| |||||| |||| | || ||||| | | | ||| ||| | Sbjct 682 ACCCTGCTCGGCTTCCCGGTGACGGAGGCCGAGGCGATGCCCGACATCGCCGCCGGCAGC 741 Query 22457 CTGCCCATCGCCTTCGGCAACTTCCGCGCCGGCTACACCGTCGT-GGATCGCCTGGGCAT 22515 || | ||||||||||| | |||||| |||||| | | || ||| ||| ||| | Sbjct 742 CTCGCGCTCGCCTTCGGCGATTTCCGCCGGGGCTACCTC-TGGTCGGACCGCACCGGCCT 800 Query 22516 CACCGTCCTGCGCGACCCCTACTCGGCCAAGCCCTTCGTGGAGTTCTACAGCCGGAAGCG 22575 || ||||||||||| || || |||||||||| |||| |||||||| | ||||| Sbjct 801 GCGGGTGCTGCGCGACCCGTATTCCGCCAAGCCCTACGTGCTGTTCTACACCACCAAGCG 860 Query 22576 CGTCGGCGGCGACGTGGTGAACTTCGAAGCCTTCAAG 22612 ||||||||||| ||| | ||||||| || ||||| Sbjct 861 CGTCGGCGGCGGGGTGCAGGACTTCGACGCGATCAAG 897 >seq88363 Length=878 Score = 100 bits (110), Expect = 1e-16 Identities = 109/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 6445 ATCGCCGCCGACCGCCTGAAATCCTTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAG 6504 |||| |||| || ||||| ||||| |||| | || || || | |||||||| ||| Sbjct 516 ATCGAGGCCGGCCACCTGATGGCCTTCATCGAGCGCATCGAGCGCTTGGAGGAGGACAAG 457 Query 6505 AG--CGGTCTCCAGGAGGACATCAAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCG 6562 | | || ||| || || |||||||| |||||| |||| |||||||||||||| | || Sbjct 456 AAGACCGTGTCC--GACGAGATCAAGGACGTCTACGCGGAGGCCAAGGGCACCGGCTACG 399 Query 6563 ACGTCAAGATCATTCGGCAGATC 6585 ||||||||||||| || ||||| Sbjct 398 ACGTCAAGATCATCCGCAAGATC 376 >seq110152 Length=599 Score = 96.9 bits (106), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 6467 CCTTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGA-GC-GGTCTCCAGGAGGACAT 6524 ||||| |||| | || ||||| || ||||| || |||| || |||| | |||||||| Sbjct 272 CCTTCATCGAGCGGATCGAACGCCTCGAGGAAGACAAGAAGCAGGTCAGC--GAGGACAT 329 Query 6525 CAAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGGCAGAT 6584 |||||| || ||| | || |||||||||||||| | |||||||||| | || || || | Sbjct 330 CAAGGATGTTTACGCCGAGGCCAAGGGCACCGGCTACGACGTCAAGGTGATCCGCAAGGT 389 Query 6585 CATCCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGAACAGCGCGCCATCCTCGAAAT 6644 | | | || ||| |||||||| | | |||| ||| || | ||||||| | Sbjct 390 CGTGTCGATCCGCAAGCAGGACAAGGACAAGCGGCGGGAGGAGGAGGAGATCCTCGGCCT 449 Query 6645 GTACGAGGAAGCGCTCGGGATGACGGAGTGAGGACG 6680 ||| | |||||||| ||| | |||| ||||| Sbjct 450 CTACCTGAGCGCGCTCGGCATGGCCGAGTAGGGACG 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199029029226642