Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_010355.1
Length=62337
Score E
Sequences producing significant alignments: (Bits) Value
seq86895 109 2e-19
seq88363 100 1e-16
seq110152 96.9 1e-15
>seq86895
Length=897
Score = 109 bits (120), Expect = 2e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 22397 ACCCTGCTCGGCTCCCCGGTCTATCAGGCTGCGGACATGCCGGCGGTTGGCGCGGGCGCC 22456
||||||||||||| |||||| |||| | || ||||| | | | ||| ||| |
Sbjct 682 ACCCTGCTCGGCTTCCCGGTGACGGAGGCCGAGGCGATGCCCGACATCGCCGCCGGCAGC 741
Query 22457 CTGCCCATCGCCTTCGGCAACTTCCGCGCCGGCTACACCGTCGT-GGATCGCCTGGGCAT 22515
|| | ||||||||||| | |||||| |||||| | | || ||| ||| ||| |
Sbjct 742 CTCGCGCTCGCCTTCGGCGATTTCCGCCGGGGCTACCTC-TGGTCGGACCGCACCGGCCT 800
Query 22516 CACCGTCCTGCGCGACCCCTACTCGGCCAAGCCCTTCGTGGAGTTCTACAGCCGGAAGCG 22575
|| ||||||||||| || || |||||||||| |||| |||||||| | |||||
Sbjct 801 GCGGGTGCTGCGCGACCCGTATTCCGCCAAGCCCTACGTGCTGTTCTACACCACCAAGCG 860
Query 22576 CGTCGGCGGCGACGTGGTGAACTTCGAAGCCTTCAAG 22612
||||||||||| ||| | ||||||| || |||||
Sbjct 861 CGTCGGCGGCGGGGTGCAGGACTTCGACGCGATCAAG 897
>seq88363
Length=878
Score = 100 bits (110), Expect = 1e-16
Identities = 109/143 (76%), Gaps = 4/143 (3%)
Strand=Plus/Minus
Query 6445 ATCGCCGCCGACCGCCTGAAATCCTTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAG 6504
|||| |||| || ||||| ||||| |||| | || || || | |||||||| |||
Sbjct 516 ATCGAGGCCGGCCACCTGATGGCCTTCATCGAGCGCATCGAGCGCTTGGAGGAGGACAAG 457
Query 6505 AG--CGGTCTCCAGGAGGACATCAAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCG 6562
| | || ||| || || |||||||| |||||| |||| |||||||||||||| | ||
Sbjct 456 AAGACCGTGTCC--GACGAGATCAAGGACGTCTACGCGGAGGCCAAGGGCACCGGCTACG 399
Query 6563 ACGTCAAGATCATTCGGCAGATC 6585
||||||||||||| || |||||
Sbjct 398 ACGTCAAGATCATCCGCAAGATC 376
>seq110152
Length=599
Score = 96.9 bits (106), Expect = 1e-15
Identities = 153/216 (71%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 6467 CCTTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGA-GC-GGTCTCCAGGAGGACAT 6524
||||| |||| | || ||||| || ||||| || |||| || |||| | ||||||||
Sbjct 272 CCTTCATCGAGCGGATCGAACGCCTCGAGGAAGACAAGAAGCAGGTCAGC--GAGGACAT 329
Query 6525 CAAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGGCAGAT 6584
|||||| || ||| | || |||||||||||||| | |||||||||| | || || || |
Sbjct 330 CAAGGATGTTTACGCCGAGGCCAAGGGCACCGGCTACGACGTCAAGGTGATCCGCAAGGT 389
Query 6585 CATCCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGAACAGCGCGCCATCCTCGAAAT 6644
| | | || ||| |||||||| | | |||| ||| || | ||||||| |
Sbjct 390 CGTGTCGATCCGCAAGCAGGACAAGGACAAGCGGCGGGAGGAGGAGGAGATCCTCGGCCT 449
Query 6645 GTACGAGGAAGCGCTCGGGATGACGGAGTGAGGACG 6680
||| | |||||||| ||| | |||| |||||
Sbjct 450 CTACCTGAGCGCGCTCGGCATGGCCGAGTAGGGACG 485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 199029029226642
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |