Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_010811.2
Length=231255
Score E
Sequences producing significant alignments: (Bits) Value
seq37323 123 4e-23
seq67250 109 8e-19
seq76089 91.5 2e-13
seq107491 87.8 3e-12
seq78026 87.8 3e-12
>seq37323
Length=3330
Score = 123 bits (136), Expect = 4e-23
Identities = 122/156 (78%), Gaps = 4/156 (3%)
Strand=Plus/Minus
Query 40968 TGCCCTTCATCCATCCGCACGGCGTCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCA 41027
||||||||||||| |||||| | || ||||||| ||||||||| || |||||
Sbjct 2616 TGCCCTTCATCCACCCGCACC---TGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCG 2560
Query 41028 GCACGGTAGGATCGGTGATCGCTACGCAAGGTGCCATCATTCCGGCGGCGGTGGGCGTGG 41087
|||||| || ||||||||| | |||| || ||| | || ||||| |||||||| ||||
Sbjct 2559 CCACGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGG 2500
Query 41088 ACATCGGCTGCGGCATGGTGGCGGTTCGTAC-CAGT 41122
||||||||||||| ||| | ||||| || || ||||
Sbjct 2499 ACATCGGCTGCGGGATGATCGCGGTCCGCACGCAGT 2464
>seq67250
Length=1371
Score = 109 bits (120), Expect = 8e-19
Identities = 295/446 (66%), Gaps = 14/446 (3%)
Strand=Plus/Plus
Query 200670 ATGGGGCTGTCGGCTGCCGTGCGATGCACCTCTGTCAGCATGAAGTCGGCCGTTGCCTGC 200729
||||| ||||||| ||| |||||||||||| |||||||| | ||||| | || |
Sbjct 507 ATGGGATTGTCGGCCGCCTGGCGATGCACCTCGGTCAGCATCACGTCGGGCTCGGCGTCG 566
Query 200730 ACGAAGAAGCCGGTGCCCAACACTGGAGGCAGTTGACCAGGGTCACCCAGCACAAGGATA 200789
|||||||||| |||| ||| || ||||| || | | ||| |||||||| ||||
Sbjct 567 GTGAAGAAGCCGCCGCCCTTCACGGGCGGCAGCTGCGCGGTGTCGCCCAGCACCAGGACG 626
Query 200790 GGAACGCCAAACGACAGCAGGTCGTTACCCTGATCTTCGTTCACCATCGACACCTCATCC 200849
|| ||| || ||||| |||||| || | || |||| ||||||||| || ||
Sbjct 627 GGCTTGCCGAAGGACAGGAGGTCGCGGCCGAGTTCCTCGTCCACCATCGAGCATTCGTCG 686
Query 200850 ACGATCAGTAGGTTGGTGT-GCCGAAGGATGGATTCAGGGTTTAGCACGTAGTCCACCAC 200908
| ||| | |||| || || | | || | ||| ||| |||||| || | |
Sbjct 687 ATGATGATGAGGTCGGCGTCGTTGGCGGCGGCCTTC-TTGTTGAGCACGAAG--GAGGGC 743
Query 200909 GCGCCCCGTCTGCGGGTCGGTCACCGCCTTGTAGATCAGGCTGTGAATGGTGGACGCACC 200968
| || || | |||| | || |||||||| || |||||||| || ||
Sbjct 744 G-ATTCCTCCTCCTCGTCGCCCTGCGTGCGGTAGATCATCGAATGGATGGTGGAGGCGCC 802
Query 200969 ACGACAGCCCTTCTTGATGAGCTCGGACGCGGCCTTGCCGGTGAACGCGGCGAATTGCAC 201028
|| |||||||| | ||| | ||||||||||| ||| | || ||||
Sbjct 803 CCGGCAGCCCTTGGACTTCAGCACCAGGGCGGCCTTGCCCGTGTAGGCCCCGAA------ 856
Query 201029 GGTGCCACCAATGTCCGCCACGCGCGCCGCAATCTCTTGCGCCAGCGTGCTCTTGCCGGT 201088
|| ||| | ||| | || | | || |||| | |||||||||| ||||||||||
Sbjct 857 --GGCGACC-TCGCCCGGCGCGTCCTCGGCGATCTGCTTCGCCAGCGTGGTCTTGCCGGT 913
Query 201089 ACCTGCGTACCCAAACAGGCGGAAGA 201114
|| || || || |||||||||||||
Sbjct 914 GCCGGCATAGCCGAACAGGCGGAAGA 939
>seq76089
Length=1116
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 186528 ATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAAC 186587
|||||| |||||| ||||||||||||| ||||||||| |||| || ||||||||| ||
Sbjct 251 ATGGTCGGAGTGATAGGATTCGAACCTACGACCCCCTCGTCCCGAACGAGGTGCGCT-AC 193
Query 186588 CAGACTGCGCTACACTC 186604
||| |||||||||||||
Sbjct 192 CAGGCTGCGCTACACTC 176
>seq107491
Length=627
Score = 87.8 bits (96), Expect = 3e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 186528 ATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAAC 186587
|||||| | | || ||||||||||||| |||||| ||| ||||||| ||| |||||| ||
Sbjct 93 ATGGTCGGGGCGATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAGATGCGCT-AC 35
Query 186588 CAGACTGCGCTACAC 186602
|||||||||||||||
Sbjct 34 CAGACTGCGCTACAC 20
>seq78026
Length=538
Score = 87.8 bits (96), Expect = 3e-12
Identities = 180/258 (70%), Gaps = 16/258 (6%)
Strand=Plus/Plus
Query 41714 GAGGCGGTGAACTGCCACCACAACTATTGTGAGCAGGAGAACCACTTCGGGCGCAACGTG 41773
|||| | | ||||||||||||||||| | ||||||||| |||||||| | |||
Sbjct 49 GAGGAGATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTC 108
Query 41774 TGGGTCACGCGCAAGGGTGCGGTTCGTGCACGTGA-AGACGATCTG---GGGATCATTCC 41829
||| || | |||||||| || | ||| ||| || | || | | ||| | || ||
Sbjct 109 TGGCTCTCCCGCAAGGGGGC-GATCG---ACGCGAGCGCCGGCCGGCCCGGGCTGATCCC 164
Query 41830 GGGATCCATGGGTACGAAGTCGTACATCGTCAAGGGCAAGGGCAATCCGCATTCGTACTG 41889
|| || ||||| || ||||||| ||||| |||||| |||||| ||| ||| |||
Sbjct 165 CGGGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCG--GTCGCGCTG 222
Query 41890 CTCGTGCAG---TCACGGGGCAGGACGC-CGTATGTCGCGCACCGAGGCCGTCAAGCGAT 41945
| | |||| |||||||| || ||| ||| ||||| ||| ||| |||||| |
Sbjct 223 CAC-AGCAGCCCGCACGGGGCGGGGCGCGAGTA-CTCGCGGTCCGCGGCGCGCAAGCGCT 280
Query 41946 TCACCGTCGAAGACCTCG 41963
||||| || || ||||
Sbjct 281 TCACCCGTGACGATCTCG 298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 738652488774600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |