Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq37323 123 4e-23 seq67250 109 8e-19 seq76089 91.5 2e-13 seq107491 87.8 3e-12 seq78026 87.8 3e-12 >seq37323 Length=3330 Score = 123 bits (136), Expect = 4e-23 Identities = 122/156 (78%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 40968 TGCCCTTCATCCATCCGCACGGCGTCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCA 41027 ||||||||||||| |||||| | || ||||||| ||||||||| || ||||| Sbjct 2616 TGCCCTTCATCCACCCGCACC---TGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCG 2560 Query 41028 GCACGGTAGGATCGGTGATCGCTACGCAAGGTGCCATCATTCCGGCGGCGGTGGGCGTGG 41087 |||||| || ||||||||| | |||| || ||| | || ||||| |||||||| |||| Sbjct 2559 CCACGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGG 2500 Query 41088 ACATCGGCTGCGGCATGGTGGCGGTTCGTAC-CAGT 41122 ||||||||||||| ||| | ||||| || || |||| Sbjct 2499 ACATCGGCTGCGGGATGATCGCGGTCCGCACGCAGT 2464 >seq67250 Length=1371 Score = 109 bits (120), Expect = 8e-19 Identities = 295/446 (66%), Gaps = 14/446 (3%) Strand=Plus/Plus Query 200670 ATGGGGCTGTCGGCTGCCGTGCGATGCACCTCTGTCAGCATGAAGTCGGCCGTTGCCTGC 200729 ||||| ||||||| ||| |||||||||||| |||||||| | ||||| | || | Sbjct 507 ATGGGATTGTCGGCCGCCTGGCGATGCACCTCGGTCAGCATCACGTCGGGCTCGGCGTCG 566 Query 200730 ACGAAGAAGCCGGTGCCCAACACTGGAGGCAGTTGACCAGGGTCACCCAGCACAAGGATA 200789 |||||||||| |||| ||| || ||||| || | | ||| |||||||| |||| Sbjct 567 GTGAAGAAGCCGCCGCCCTTCACGGGCGGCAGCTGCGCGGTGTCGCCCAGCACCAGGACG 626 Query 200790 GGAACGCCAAACGACAGCAGGTCGTTACCCTGATCTTCGTTCACCATCGACACCTCATCC 200849 || ||| || ||||| |||||| || | || |||| ||||||||| || || Sbjct 627 GGCTTGCCGAAGGACAGGAGGTCGCGGCCGAGTTCCTCGTCCACCATCGAGCATTCGTCG 686 Query 200850 ACGATCAGTAGGTTGGTGT-GCCGAAGGATGGATTCAGGGTTTAGCACGTAGTCCACCAC 200908 | ||| | |||| || || | | || | ||| ||| |||||| || | | Sbjct 687 ATGATGATGAGGTCGGCGTCGTTGGCGGCGGCCTTC-TTGTTGAGCACGAAG--GAGGGC 743 Query 200909 GCGCCCCGTCTGCGGGTCGGTCACCGCCTTGTAGATCAGGCTGTGAATGGTGGACGCACC 200968 | || || | |||| | || |||||||| || |||||||| || || Sbjct 744 G-ATTCCTCCTCCTCGTCGCCCTGCGTGCGGTAGATCATCGAATGGATGGTGGAGGCGCC 802 Query 200969 ACGACAGCCCTTCTTGATGAGCTCGGACGCGGCCTTGCCGGTGAACGCGGCGAATTGCAC 201028 || |||||||| | ||| | ||||||||||| ||| | || |||| Sbjct 803 CCGGCAGCCCTTGGACTTCAGCACCAGGGCGGCCTTGCCCGTGTAGGCCCCGAA------ 856 Query 201029 GGTGCCACCAATGTCCGCCACGCGCGCCGCAATCTCTTGCGCCAGCGTGCTCTTGCCGGT 201088 || ||| | ||| | || | | || |||| | |||||||||| |||||||||| Sbjct 857 --GGCGACC-TCGCCCGGCGCGTCCTCGGCGATCTGCTTCGCCAGCGTGGTCTTGCCGGT 913 Query 201089 ACCTGCGTACCCAAACAGGCGGAAGA 201114 || || || || ||||||||||||| Sbjct 914 GCCGGCATAGCCGAACAGGCGGAAGA 939 >seq76089 Length=1116 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 186528 ATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAAC 186587 |||||| |||||| ||||||||||||| ||||||||| |||| || ||||||||| || Sbjct 251 ATGGTCGGAGTGATAGGATTCGAACCTACGACCCCCTCGTCCCGAACGAGGTGCGCT-AC 193 Query 186588 CAGACTGCGCTACACTC 186604 ||| ||||||||||||| Sbjct 192 CAGGCTGCGCTACACTC 176 >seq107491 Length=627 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 186528 ATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAAC 186587 |||||| | | || ||||||||||||| |||||| ||| ||||||| ||| |||||| || Sbjct 93 ATGGTCGGGGCGATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAGATGCGCT-AC 35 Query 186588 CAGACTGCGCTACAC 186602 ||||||||||||||| Sbjct 34 CAGACTGCGCTACAC 20 >seq78026 Length=538 Score = 87.8 bits (96), Expect = 3e-12 Identities = 180/258 (70%), Gaps = 16/258 (6%) Strand=Plus/Plus Query 41714 GAGGCGGTGAACTGCCACCACAACTATTGTGAGCAGGAGAACCACTTCGGGCGCAACGTG 41773 |||| | | ||||||||||||||||| | ||||||||| |||||||| | ||| Sbjct 49 GAGGAGATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTC 108 Query 41774 TGGGTCACGCGCAAGGGTGCGGTTCGTGCACGTGA-AGACGATCTG---GGGATCATTCC 41829 ||| || | |||||||| || | ||| ||| || | || | | ||| | || || Sbjct 109 TGGCTCTCCCGCAAGGGGGC-GATCG---ACGCGAGCGCCGGCCGGCCCGGGCTGATCCC 164 Query 41830 GGGATCCATGGGTACGAAGTCGTACATCGTCAAGGGCAAGGGCAATCCGCATTCGTACTG 41889 || || ||||| || ||||||| ||||| |||||| |||||| ||| ||| ||| Sbjct 165 CGGGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCG--GTCGCGCTG 222 Query 41890 CTCGTGCAG---TCACGGGGCAGGACGC-CGTATGTCGCGCACCGAGGCCGTCAAGCGAT 41945 | | |||| |||||||| || ||| ||| ||||| ||| ||| |||||| | Sbjct 223 CAC-AGCAGCCCGCACGGGGCGGGGCGCGAGTA-CTCGCGGTCCGCGGCGCGCAAGCGCT 280 Query 41946 TCACCGTCGAAGACCTCG 41963 ||||| || || |||| Sbjct 281 TCACCCGTGACGATCTCG 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738652488774600