Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq62508 282 2e-71 seq109977 253 1e-62 seq86780 242 2e-59 seq94261 199 2e-46 seq114502 187 1e-42 seq109048 98.7 5e-16 seq105676 84.2 1e-11 >seq62508 Length=1551 Score = 282 bits (312), Expect = 2e-71 Identities = 568/830 (68%), Gaps = 33/830 (4%) Strand=Plus/Minus Query 65934 CTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGT 65993 |||||| ||| || ||| |||| || ||| | ||||| || | ||| |||| ||| Sbjct 1319 CTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGTGTGATCGAGGTCTATGGT 1260 Query 65994 CCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCC 66053 || ||||| || || ||| | ||| | || |||| | ||| | | |||||| | Sbjct 1259 CCCGAGTCGTCGGGCAAGACGACGCTCGCGCTGCACGTCATCGCCGAGTCGCAGAAGAAC 1200 Query 66054 GGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCG 66113 || |||| ||||||| | |||||||||| || | |||||||| | || ||| | Sbjct 1199 GGCGGCACTGCCGCCTTCGTCGACGCCGAGCACGCGCTCGACCCGGTCTATGCCAAGAAA 1140 Query 66114 CTCGGG-GTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCT 66172 || ||| || | |||| | || | || |||||| ||||| ||||| ||||| || Sbjct 1139 CTTGGGCGTCAACATCGATGAGCTGATCGTGTCGCAGCCCGACACCGGCGAACAGGCGCT 1080 Query 66173 GGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGT 66232 ||||||||| ||| || ||| || || | | | | | || || || || || Sbjct 1079 GGAGATCGTCGACACGCTGGTCCGCTCCAACGCGATCGACGTGCTGGTGGTCGATTCGGT 1020 Query 66233 GGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCT 66292 || || ||||||||||| |||||| |||| || || || || ||| ||||||||||| Sbjct 1019 CGCCGCGCTGGTGCCGCGCGCGGAGATCGAGGGCGAGATGGGCGACAGCCACGTCGGCCT 960 Query 66293 GCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAA 66352 || || || |||||||| ||| | ||||||||||||| ||| |||| |||| | Sbjct 959 TCAGGCGCGGCTGATGTCGCAGAGCTTGCGCAAGCTGACGGGCTCGAT---CAGC-CGCT 904 Query 66353 CACGCT-CACCCTG---TGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACG 66408 | |||| || || | | || ||||| ||| ||||||||| |||| |||| Sbjct 903 CGCGCTGCATGGTGATCTTCATCAACCAGCTCCGCATGAAGATCGG---CGTGATGTACG 847 Query 66409 G---CCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTA 66465 | |||| ||||| |||||||| || || || ||| |||||||||||||| || Sbjct 846 GCAACCCG---GAGACGACCACCGGCGGCAACGCGCTGAAATTCTACGCCTCGGTTCGCC 790 Query 66466 TGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGC 66525 | || ||||| | | || | | ||||| |||| |||| ||||||||| || | Sbjct 789 TCGACATCCGCCGCACCGGCGCGATCAAGGATCGCGACGAGGTCGTCGGCAACGCGACCC 730 Query 66526 GCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCG 66585 |||||||||| |||||||||||| | ||||| ||| | |||| ||||| |||| Sbjct 729 GCGTGAAGGTGGTCAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCA 670 Query 66586 TCTACGGCGAGGGCATTTCCCGCGA--GGCTGAACTCCTCGACATGGCCGTTTCCCGAGG 66643 | |||||||||||| || | || ||| || |||||||| | | ||| || Sbjct 669 TGTACGGCGAGGGCGTTCAGCAAGATCGGC-GAGATCCTCGACCTCGGCGTCAAGGCCGG 611 Query 66644 GCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGA---ACATCGGCCAGGG 66700 ||| || ||||||| || || ||||||| ||| |||| || |||||||||||| Sbjct 610 GCTGGTCGAGAAGTCGGGCGCGTGGTTCAGCTAC---GACACGATGCGCATCGGCCAGGG 554 Query 66701 CAAGCCCAAGA---CCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCG 66747 | | | ||| || | | | ||| ||| ||||| |||||||||| Sbjct 553 C---CGCGAGAACGCCAAGAACTACCTGCGGGAGAACCCCGACGTCGCCG 507 >seq109977 Length=599 Score = 253 bits (280), Expect = 1e-62 Identities = 385/540 (71%), Gaps = 20/540 (4%) Strand=Plus/Minus Query 66214 TCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCG 66273 || |||| | ||||| || || ||||| |||||||| || ||| |||| || || || | Sbjct 581 TCGTCGTCATCGACTCCGTCGCAGCCCTCGTGCCGCGCGCCGAGATCGAGGGCGAGATGG 522 Query 66274 GGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCG 66333 | ||||| ||||||||||| || || || || ||||| ||||| | |||||||| |||| Sbjct 521 GTGACTCTCACGTCGGCCTCCAAGCTCGACTCATGTCGCAGGCGCTTCGCAAGCTCACCG 462 Query 66334 GCACGATT-GCCAGCACCAACACGCTCACCCTG---TGGGTGAATCAGCTGCGCGAGAAG 66389 | | ||||| ||| |||| ||| || | | || ||||||||||||||| Sbjct 461 GTGGTCTCAGCCAG-ACCCACAC---CACGATGATCTTCATCAACCAGCTGCGCGAGAAG 406 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 |||||| ||| || |||| |||||||| | || || ||||| ||| ||| Sbjct 405 ATCGGC---GTGTTCTTCGGCAGCCCCGAGACCACGGCGGGCGGCAAGGCGCTGAAGTTC 349 Query 66450 TACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCT 66509 ||||| || ||||| | || ||||| | |||| || |||||| ||| || || Sbjct 348 TACGCGTCCGTGCGCCTCGACATCCGCCGCATCGAGACGCTGAAGGACGGCACCGACGCG 289 Query 66510 GTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAG 66569 |||||||||||||| ||||| ||||| |||||||||||| ||||||| || | ||| Sbjct 288 GTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGCAG 229 Query 66570 GCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATG 66629 || ||||| |||| ||||||||| ||||| |||||||||| || ||||| | Sbjct 228 GCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGCGAGGGCAGCCTGATCGACTTC 169 Query 66630 GCCGTTTCCCGAG---GGC-TCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAA 66685 | ||| |||| ||| || |||||||||| || ||||||| || ||||| || | | Sbjct 168 GGCGT----CGAGCACGGCATCGTCAAGAAGTCGGGCGCCTGGTACACGTACGAGGGCGA 113 Query 66686 GAACATCGGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGC 66745 | | |||||||||||| ||| ||| | | | ||| | | ||| ||||| |||| Sbjct 112 CCAGCTGGGCCAGGGCAAGGAGAAGGCCGCG-ACTTCCTGCTGAAGAACGCGGACATCGC 54 >seq86780 Length=899 Score = 242 bits (268), Expect = 2e-59 Identities = 495/728 (68%), Gaps = 13/728 (2%) Strand=Plus/Minus Query 65979 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 66038 || ||||||||||| || || || || || ||| | ||| | |||||||| | ||| Sbjct 882 GTCGAGATCTACGGCCCCGAATCGTCGGGCAAGACCACGCTCGCGCTCCACGCCATCGCC 823 Query 66039 AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCT 66098 | || ||||||||||| |||| |||||| | | | || ||||| ||| | ||||| || Sbjct 822 GAGGCGCAGAAGGCCGGCGGCACCGCCGCGTTCGTGGATGCCGAGCATGCGCTCGATCCG 763 Query 66099 GAGTACGCCGCGGCGCTCGGGGTGGATGTCGAC-AATCTCGTGGTTGTGCAGCCAGACAC 66157 | |||||| | ||| || || | ||||| || ||| | || ||||| ||||| Sbjct 762 GTCTACGCCAAGAAGCTGGGCGTCAACATCGACGAAGCTCATCGTCAGCCAGCCCGACAC 703 Query 66158 TGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCAT 66217 ||||||||||| |||||||||| ||| || || ||| || | | | | | Sbjct 702 GGGCGAGCAGGCGCTGGAGATCGCGGACACGCTGGTGCGGTCGAACGCG-TCGACGTGCT 644 Query 66218 CGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGA 66277 || | || || || ||||| |||||||||||||||||| |||| || || || || || Sbjct 643 GGTGATCGATTCGGTCGCGGCGCTGGTGCCGCGGGCGGAGATCGAGGGCGAGATGGGCGA 584 Query 66278 CTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCAC 66337 | || |||||||| || || ||||||||| ||||| |||||||| | || || | Sbjct 583 CAGCCATGTCGGCCTCCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGATCACGGGATC 524 Query 66338 GATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAA 66397 ||| | || |||| ||||| | | | || ||| | ||| ||||||||| Sbjct 523 GATCAGCCGCTCCAAGACGCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGG--- 467 Query 66398 CGTGGGCTACGGC---CCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGC 66454 |||| |||||| ||| || || ||||| || || || || || |||||||| Sbjct 466 CGTGATGTACGGCAATCCG---GACACGACCACGGGCGGCAACGCGCTCAAGTTCTACGC 410 Query 66455 CTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGA-GAAGGAAGGCGATGAGGCTGTCG 66513 || || || | || ||||| | | || | || ||||| | || || |||| Sbjct 409 GTCCGTCCGCCTCGACATCCGCCGCA-CGGGCCAGATCAAGGATCGTGACGATATCGTCG 351 Query 66514 GCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTG 66573 ||||| |||||||||||||| |||||||||||| | ||||| ||| | |||| | Sbjct 350 GCAACACGACGCGCGTGAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGTCG 291 Query 66574 AGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCCG 66633 |||| |||| | || ||||||||| | ||| | || || ||||||| | | || Sbjct 290 AGTTCGACATCATGTATGGCGAGGGCGTGTCCAAGGTGGGCGAGATCCTCGATCTCGGCG 231 Query 66634 TTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCG 66693 | ||||| || |||| || || || ||||||| |||| || ||||| Sbjct 230 TCAAGGCGGGGCTGGTCGAGAAATCGGGCGCGTGGTTCAGCTACGACAGCATCCGCATCG 171 Query 66694 GCCAGGGC 66701 |||||||| Sbjct 170 GCCAGGGC 163 >seq94261 Length=791 Score = 199 bits (220), Expect = 2e-46 Identities = 435/646 (67%), Gaps = 19/646 (3%) Strand=Plus/Plus Query 66065 CGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGA 66124 ||||| | | || ||||| || | ||||| || |||||| |||||| || | Sbjct 6 CGCCTTCGTGGATGCCGAGCACGCCCTCGATCCGATCTACGCCCGCAAGCTCGGCGTCAA 65 Query 66125 TGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66184 | ||||| | || || | |||||| ||||| ||||||||||| ||||||||| || Sbjct 66 TCTCGACGACCTGCTGATCTCGCAGCCCGACACCGGCGAGCAGGCGCTGGAGATCACCGA 125 Query 66185 CCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGT 66244 | || || || |||| | | | | | || || || || |||||||| ||| Sbjct 126 CACGCTGGTGCGCTCCGGCGCGATCGACGTGCTGGTGGTCGATTCGGTGGCGGCGCTGAC 185 Query 66245 GCC-GCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTC-GGCCTGCATGCCCGC 66302 ||| |||||| ||| |||| || || || || ||| || | | ||||| || |||||| Sbjct 186 GCCCGCGGGCCGAGATCGAGGGCGAGATGGGCGACGAGCCAGCCCGGCCTCCAGGCCCGC 245 Query 66303 CTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAAC---ACGCTC 66359 |||||| |||||| |||||||||| ||||| |||| | || | ||| | | | Sbjct 246 CTGATGAGCCAGGCCCTGCGCAAGCTCACCGGTTCGATCTCGCGCTCGAACTGCATGGTG 305 Query 66360 ACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAG 66419 | | | | || ||| | || |||||||||| ||| |||||| || ||| Sbjct 306 ATCTTCA---TCAACCAGATCCGGATGAAGATCGGC---GTGATGTACGGCTCGCCCGAG 359 Query 66420 ACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGG 66479 ||||| ||||| || || || ||| |||||||||||||| || | || ||||| | Sbjct 360 ACCACGACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGC 419 Query 66480 ATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTC 66539 ||| | ||| |||||| |||| ||||| ||||||||| ||||| ||||| || Sbjct 420 ATCTCGACCCTGAAGGACCGCGACGAGGCGATCGGCAACCAGGTCCGCGTCAAGGTCGTG 479 Query 66540 AAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGC 66599 ||||||||| | ||||| ||| | |||| ||||| |||| | | |||||||||| Sbjct 480 AAGAACAAGGTCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGC 539 Query 66600 ATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTTTCCCGAGGGC----TCATCAAGAA 66655 | || | | || || ||||| | | ||| | ||| | || || |||| Sbjct 540 GTGTCGAAGGTCGGCGAGCTGATCGACCTCGGCGT----CAAGGCCGGCATCGTCGAGAA 595 Query 66656 GTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCCAGGGC 66701 ||| || ||||||||| ||| | || | ||||||||||| Sbjct 596 GTCCGGCGCCTGGTTCTCCTACAACAGCCAGCGCCTCGGCCAGGGC 641 >seq114502 Length=552 Score = 187 bits (206), Expect = 1e-42 Identities = 365/531 (69%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 65935 TGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTC 65994 ||||| || || |||||||| || | ||| ||||||| | | ||||||||||| | Sbjct 29 TGGACCTGGCGCTGGGCATCGGCGGCTTGCCGCGGGGCCGCATCATCGAGATCTACGGGC 88 Query 65995 CTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCCG 66054 | || || || ||| | |||||| ||||||||| | ||| | || ||| |||| Sbjct 89 CGGAAAGCTCCGGCAAGACCACGTTGGCGCTCCACGCGATTGCCGAAGCGCAGC--GCCG 146 Query 66055 GTG--GCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGC 66112 | | ||| | |||| |||||| || || || | || ||||| ||||| ||| Sbjct 147 GGGCGGCACCTGTGCCTTCATCGATGCGGAGCACGCGCTGGACCCGATCTACGC-GCGCA 205 Query 66113 -GCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCC 66171 ||| || ||||| || ||||| ||| || | ||||| ||| ||| |||||||| | Sbjct 206 AGCTGGGCGTGGACGTGGACAACCTCCTGCTGAGCCAGCCGGACGGTGGTGAGCAGGCGC 265 Query 66172 TGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTG 66231 ||||||||| ||| || || || |||| | | | | || |||||| | Sbjct 266 TGGAGATCGCAGACACGCTGGTTCGCTCGGGCGCCATCGACGTGCTGGTGGTGGACAGCG 325 Query 66232 TGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCC 66291 | ||||| ||||||||||||||||| || ||||| || || || ||| |||||||||| Sbjct 326 TCGCGGCGCTGGTGCCGCGGGCGGAACTGGAAGGCGAGATGGGCGACAGCCACGTCGGCC 385 Query 66292 TGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCAC-- 66349 |||||||||| || ||| |||||| ||||||||||||| |||| | || | | Sbjct 386 TGCATGCCCGGCTCATGAGCCAGGCCCTGCGCAAGCTGACGGGCAGCGTGGCGCGGTCGC 445 Query 66350 -CAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGC--AACGTGGGCTA 66406 || || ||||| | | | || ||| | || |||||||||| | || ||| | Sbjct 446 GCACCATGCTCA---TCTTCCTCAACCAGATCCGGTTGAAGATCGGCGTGATGTCGGCAA 502 Query 66407 CGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTC 66457 | |||||| |||||||| || || || || ||| |||||||| || Sbjct 503 C--CCCGAA----ACCACCACGGGCGGCAACGCGCTGAAGTTCTACGCGTC 547 >seq109048 Length=609 Score = 98.7 bits (108), Expect = 5e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 59519 CTCAAGCAGCGCTCCTTCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAG 59578 |||||||||||||| ||||||||| || ||||| |||||||||||||||||| | || Sbjct 602 CTCAAGCAGCGCTCGTTCGAGACCCGTGAGGGCGAGAAGCGCACCGTCATCGAGCTCGAC 543 Query 59579 GTAGACGAGATCGGCCCGTCGCTG 59602 || || ||| |||||||||||||| Sbjct 542 GTCGAGGAGGTCGGCCCGTCGCTG 519 >seq105676 Length=647 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 65917 CCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGG 65976 ||||||||||||| | || ||| ||| |||||| |||| || || ||||||||| Sbjct 512 CCACCGGCTCGATCGGGCTCGACATCGCCCTCGGCGTCGGCGGCCTGCCCCGGGGCCGGG 571 Query 65977 TAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGG 66036 | || ||||||||||| || || || || || ||| | || || ||| ||| || | | Sbjct 572 TCGTCGAGATCTACGGGCCCGAATCGTCCGGCAAGACCACCCTGGCCCTGCACACGATCG 631 Query 66037 CCAATGCCCAGAAG 66050 || | ||||||||| Sbjct 632 CCGAGGCCCAGAAG 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242075630077388