Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_011103.1 Length=60195 Score E Sequences producing significant alignments: (Bits) Value seq69917 107 7e-19 >seq69917 Length=1281 Score = 107 bits (118), Expect = 7e-19 Identities = 184/262 (70%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 43318 AAGCTGATCGACGGCACTTTCCCTGACTATCAGCGCGTCATCCCCACCCAGAACGACAAG 43377 ||||||||||||||||| ||||| ||||| ||||| || ||||| || | ||||||||| Sbjct 1141 AAGCTGATCGACGGCACCTTCCCGGACTACCAGCGGGTGATCCCGGCCAACAACGACAAG 1082 Query 43378 AAGATCGTCTTCGGCAGCGATGACATGCGCC-AGGCAGCCTCGCGCGTCTCTGTGATCTC 43436 || | ||| |||| | | | |||| |||| | || ||||| |||||| Sbjct 1081 CGCCTCACCGTCGAGCGCGACGTC-TTCGCCAAGGCGGTGGACCGGGTCTCGACGATCTC 1023 Query 43437 GTCTGAGCGTGGCCGCGCGGTGAAGTTATCCTTCGCGGAGGGGGAAGCGAAGCTGGCCGT 43496 ||| ||||| |||||||| |||||| | || | |||||| | ||| | || Sbjct 1022 GTCCGAGCGCGGCCGCGCCGTGAAGCTCGGGCTCACCGAGGGGCGCCTGGCGCTTTCGGT 963 Query 43497 GAGCAGTCCGGAAACCGGAAGCGCCACCGACGAAATCTTCGTGAACTACGATGGCGACCC 43556 | || ||||| | || |||||||| || || || ||| | ||||| |||| || Sbjct 962 CAACAACCCGGATTCGGGCAGCGCCACGGAGGAGCTCGACGTCGATTACGA-GGCGGCCG 904 Query 43557 G-ATCGATATCGGATTCAACGC 43577 | |||||||||| |||||||| Sbjct 903 GCCTCGATATCGGCTTCAACGC 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192197020088026