Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq57685 201 1e-46 seq78534 179 4e-40 >seq57685 Length=1792 Score = 201 bits (222), Expect = 1e-46 Identities = 951/1495 (64%), Gaps = 52/1495 (3%) Strand=Plus/Minus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GAC 93956 ||||| || |||| || || || || |||||| || | || || ||||| || ||| Sbjct 1682 CCGACACTCTTCAGTGCTGGTACTCCCAACCCACAGCTGGCCTCCTGCTTCCTCATCGAC 1623 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | ||||| ||| |||| || || | ||| | |||||| ||| || | ||||| Sbjct 1622 GT-CAAGGAGGACAGCATCGAGGGTATCTACGATACACTCAAGACCTGCGCAATGATCTC 1564 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 || | || || || |||||| ||| || ||| | | ||||| | ||||| ||||| Sbjct 1563 GAAGAATGCTGGCGGCATCGGGTTCAACGTTCACCGCATCCGTGCGACTGGTTCGTACAT 1504 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 |||| ||||||||||| ||||| || || || || ||||| || ||||||||||| | Sbjct 1503 TGGCGGCACCAATGGCACATCCAATGGTCTGGTACCAATGCTTCGTGTCTTCAACAATAC 1444 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 || || || || ||||| ||||| | | | || | || || | || ||||| Sbjct 1443 TGCTCGTTATGTCGACCAAGGTGGCAACAAGCGTCCCGGCGCCTTTGCCATGTACCTCGA 1384 Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 ||| |||||||| || || || ||| | || || || |||||||||||||| || Sbjct 1383 GCCATGGCACGCTGATGTCTTCGCCTTCCTGGATCTTCGCAAGAACCACGGCAAGGAGGA 1324 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 || | || | ||||||||||| || |||||| | || || ||||| ||||| || || Sbjct 1323 GGTCCGTGCTCGTGACCTCTTCTATGCACTCTGGATTCCCGATCTTTTCATGAAGCGTGT 1264 Query 94317 CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGT 94376 |||| | || | |||| || | || || || || || || || || | ||||| Sbjct 1263 CGAGCAGAATGGAGATTGGACGCTGATGTGCCCGAACGAGTGCCCTGGTCTTGCTGACGT 1204 Query 94377 TTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGG-- 94434 | ||| || || || | |||| ||| | | | | |||| ||| Sbjct 1203 CTATGG---------CGATGAGTTCGAGGCTCTCTACAACAAGTACGAGAAGG--AGGGT 1155 Query 94435 -AAGGTTATG-GA-------TGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 ||| || || || |||||| ||| | ||| | || | ||| Sbjct 1154 CGTGGTCGTGAGACCGTTCGCGCACAGAAGCTATGGTACGCCATCCTCGAGGCTCAGACA 1095 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 ||||| || | || | ||| | | ||| || || |||| ||| ||| ||| || Sbjct 1094 GAGACTGGCAATCCTTTCATGCTCTACAAAGATGCTTGCAACCGCAAAAGCAATCAGAAG 1035 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 ||||||| || || ||||| ||||| ||||| ||||| | ||||||||| |||| Sbjct 1034 AACCTCGGTGTCATTCGCAGCTCCAATCTCTGCACAGAGATCATTGAGTATACTGCTCCT 975 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665 || ||| ||||||| || ||| ||| || ||| ||| ||| | | ||| | Sbjct 974 GATGAGGTTGCTGTTTGCAACTTGGCTTC------TCTG-GCAC-TTCCTAC-CTATGTC 924 Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGG--ATG 94722 ||| | | | | || ||||| | | |||| |||| | || ||| | Sbjct 923 GACATGGCCAACGAGTCTTTCGACTTCCAAAAGCTCCATGAAGT---CGTTCAGGTCGTC 867 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 ||| ||||||||||| | | ||| ||| || ||| || || || ||||| || Sbjct 866 GTCAAGAACCTGAACAAGATCATCAACATCAATCACTATCCAGTGCCTGAGGCTCGCAAG 807 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || || || || || || ||||| | || || || ||| ||||||| || | || Sbjct 806 TCCAATATGCGTCACCGCCCTATCGGTCTTGGTGTGCAAGGTCTCGCGGATGCATTCTTG 747 Query 94843 ATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGT---TTGAATTTGAACATATTC 94899 |||| |||| | |||||| || | | ||| || | || | | || ||| Sbjct 746 GCTCTGCGCATGCCATTCGACTC--TCCA-GAGGCTCGTCAACTCAACATCCAGATCTTC 690 Query 94900 GAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG 94959 || | ||| || ||| || | | || | | ||||||| | || || Sbjct 689 GAGACCATCTACCACGCTGCTCTCACTGCCTCGTGCGATTTGGCCAAA---GAACTTGGT 633 Query 94960 CCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGG 95019 || |||| | | | || || || | || ||| |||| | |||| | ||| Sbjct 632 CCTTACGAGACCTACGAGGGCTCTCCTGTTTCGCAAGGCGAGCTTCAATACGACATGTGG 573 Query 95020 GGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACAC 95079 ||||||| ||| | | || | |||||| | ||||| ||| | | | ||| Sbjct 572 GGTGTGACTCCCACTGACCTCTGGGACTGGAACGCTCTCAAGGCTAAGATCGCTGACCAC 513 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 || || ||| | || ||||| || || ||||| || ||||| || |||||||| | Sbjct 512 GGCGTCCGAAATTCTCTTCTTGTCGCACCTATGCCGACTGCCTCGACATCGCAGATCATG 453 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 ||| |||||||| ||||| || | ||| |||||| | ||| | || || | ||| Sbjct 452 GGCTTCAACGAGTGCTTCGAGCCATACACTTCCAACATTTACTCTCGTCGTGTCTTGGCC 393 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGT--CTCTGGGTGTGT 95257 || || |||| ||| ||||| || || ||| || ||| || ||| | | Sbjct 392 GGCGAGTTCCAGGTCGTCAACCCTTGGCTTCTCAAGGATCT--CGTTGATCGTGGTCTCT 335 Query 95258 GGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317 || |||||| | ||||| | | | || || ||| ||| | ||| |||||| Sbjct 334 GGTCTGACAACATGAAGAATCGCATCATCGCCGACAGCGGATCCATTCAGCGCATCCCTA 275 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | || || || ||| ||||||| ||||||||||| || ||||||||| ||||| Sbjct 274 ACATTCCCGATGACCTCAAGGCTCTCTACAAGACTGTCTGGGAGATCAGCCAGCG 220 >seq78534 Length=1057 Score = 179 bits (198), Expect = 4e-40 Identities = 432/646 (67%), Gaps = 7/646 (1%) Strand=Plus/Plus Query 93987 CGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGT 94046 ||||| |||||| ||||| | || || || |||| || ||||| || | | ||| Sbjct 3 CGACACTCTCAAGACATGTGCTATGATTTCCAAGAACGCTGGCGGAATTGGTTTGAATGT 62 Query 94047 CCACGACG-TACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCC 94105 ||| | | | |||| ||||| |||||| ||||| || ||||| || ||||| | Sbjct 63 GCACCAAAATTAGAGCCACAGGTTCATACATCGCGGGTACAAACGGCACTTCGAACGGTC 122 Query 94106 TCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGA 94165 | |||||||| || ||||| ||||| | || || ||||| || || || || | Sbjct 123 TGACGCCTATGCTGCGAGTCTTTGACAACACTGCTCGGTACGTCGATCAAGGCGGCAACA 182 Query 94166 GGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCA 94225 ||| ||| | ||||| | || || ||||| |||||||| || || | | Sbjct 183 AGAGACCAGGTGCCTTCGCCATTTACCTTGAGCCATGGCACGCTGATGTATTCGAGTGGC 242 Query 94226 TCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTC 94285 || || || |||||||||||||||| || | || |||||||| ||||||||||||| Sbjct 243 TCAACTTGAGAAAGAACCACGGCAAAGAAGAAGTCAGAGCCAGAGATCTCTTCTACGCTC 302 Query 94286 TCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTT 94345 ||||| | || ||||| || ||||| || || || || || | | ||||| || | | Sbjct 303 TCTGGATTCCTGACCTATTCATGAAGCGAGTAGAAAAGAATGCAGACTGGACACTGATGT 362 Query 94346 GTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCG-CG-TTTTGAAGACTTGTA 94403 |||||||||||||||| || |||| ||| | || || || || || | ||||| Sbjct 363 GTCCCAATGAATGTCCTGGTTTGTCTGACTGCTACGG--CGACGAATTCGAGGCCTTGTT 420 Query 94404 TGCTCGTTACGA-ATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGG 94462 | || || | ||| || |||| | | || || | ||| ||| |||||| Sbjct 421 CACCAAATATGAGAAGGCA-GGAAAGGGCCGCCAGACAATTAAGGCTCAGAAACTGTGGT 479 Query 94463 ATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTG 94522 || ||| | || | ||| ||||| || | || | ||| ||| ||| || | Sbjct 480 ATGCCATCATTGAGGCTCAGACTGAGACTGGCAATCCATTCATGCTGTACAAAGATGCCT 539 Query 94523 TCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCG 94582 |||| |||| |||||| || |||| || ||||||| || || || ||||||| Sbjct 540 GCAACCGCAAGAGCAACCAAAAGAACCTGGGAACGATCAAGTCATCCAACCTCTGCACCG 599 Query 94583 AGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCT 94628 | || | ||||||||| |||| || || | || || || || || Sbjct 600 AAATCATTGAGTATACTGCTCCAGATGAAGTCGCAGTTTGCAATCT 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493897080280440