Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_011271.1
Length=155372
Score E
Sequences producing significant alignments: (Bits) Value
seq82408 91.5 1e-13
seq54899 91.5 1e-13
seq87011 89.7 5e-13
seq96416 84.2 2e-11
seq70008 84.2 2e-11
seq67087 82.4 8e-11
>seq82408
Length=976
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 116080 ACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGGTTCA 116139
||||| | | ||||||||||||||| |||| ||||| || || | ||||| | ||
Sbjct 892 ACGGCCTGATCGTCTACCAGGAGCAGGTGATGGCGACCGCGCAGAAGGTCGCCGGCTACA 833
Query 116140 CCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAGATCATCA 116199
||| |||| ||||||| | |||||| || || ||||||||||||| ||||||| ||
Sbjct 832 CCCTGGGCCAGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGAAGAAGGAGATCCTCG 773
Query 116200 ACG 116202
|||
Sbjct 772 ACG 770
>seq54899
Length=627
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 115024 GCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCGA 115083
||| |||||| ||||| |||| ||| |||| |||| | | ||||||||| ||
Sbjct 279 GCCAGGGCCGCGGCTCGGCCGCGAACTCCGCGGTCTGCTACCTGCTCGGCATCACCGCGG 220
Query 115084 TCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGACT 115143
||||| ||||||||| ||||||| ||||||||||||| || | || ||| |||
Sbjct 219 TCGACTCGATCAAGTTCGACCTGCCGTTCGAGCGCTTCCTCTCCTCGCTGCGCGACGAGG 160
Query 115144 TCCCCGACATCGACGTCGACTTC 115166
|| ||||||||||| ||||||
Sbjct 159 AGCCGGACATCGACGTGGACTTC 137
>seq87011
Length=895
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/147 (74%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 115022 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 115081
|||||| ||||| || |||| || |||||| ||| | |||| ||| | ||||||
Sbjct 76 CGGCCCCGGCCGCGGGTCCGGCGCCGGCTCGATGGCGGCGTACGCGATGCGGATCACCGA 135
Query 115082 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CCC 115139
| |||||| | || ||| ||||| |||||||| ||| | ||||| |||||| | |
Sbjct 136 CCTGGACCCGCTGCAGCACGGGCTGATCTTCGAGCGGTTCCTGAACCCCGACCGCGTCTC 195
Query 115140 GACTTCCCCGACATCGACGTCGACTTC 115166
|| | |||||| ||||||||||||||
Sbjct 196 GA--TGCCCGACTTCGACGTCGACTTC 220
>seq96416
Length=762
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 116076 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 116135
|||||||||||| ||||||||||||||||| |||| | | |||| ||| ||| |||
Sbjct 500 ACCTACGGCATCATGGTCTACCAGGAGCAGGTGATGCAGATCGCCCAGGTCATGGGCGGC 441
Query 116136 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGA 116184
| ||| ||||| |||||| | |||||| || || ||||||||||
Sbjct 440 TATTCCCTGGGCGGGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGA 392
>seq70008
Length=771
Score = 84.2 bits (92), Expect = 2e-11
Identities = 110/148 (74%), Gaps = 6/148 (4%)
Strand=Plus/Plus
Query 115022 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCA-TGGGCATCACCT 115080
|||||||||||| ||||||| || ||||||||||| | | ||| || |||||||
Sbjct 260 CGGCCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTGGCGTG-GTCGCTGCTCATCACCG 318
Query 115081 CGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CC 115138
|||||||| | | || |||| |||||||||||||| ||||||| || ||| |
Sbjct 319 ATCTCGACCCGCTGCGCTTCGGCCTGCTGTTCGAGCGCTTCCTCAACCCCGAGCGCGTCT 378
Query 115139 CGACTTCCCCGACATCGACGTCGACTTC 115166
||| | || || ||||| ||||||||
Sbjct 379 CGA--TGCCGGATTTCGACATCGACTTC 404
>seq67087
Length=1377
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 92216 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 92275
||||| ||||| |||||||| || || | || ||||||| || || |||||||||||||
Sbjct 246 ACGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGA 305
Query 92276 ATCCTGTCACCCCGACTC 92293
||||||||| ||||| ||
Sbjct 306 ATCCTGTCATCCCGATTC 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496232374138080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |