Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_011272.1
Length=153894
Score E
Sequences producing significant alignments: (Bits) Value
seq82408 91.5 1e-13
seq54899 91.5 1e-13
seq87011 89.7 5e-13
seq96416 84.2 2e-11
seq70008 84.2 2e-11
seq67087 82.4 8e-11
>seq82408
Length=976
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 113557 ACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGGTTCA 113616
||||| | | ||||||||||||||| |||| ||||| || || | ||||| | ||
Sbjct 892 ACGGCCTGATCGTCTACCAGGAGCAGGTGATGGCGACCGCGCAGAAGGTCGCCGGCTACA 833
Query 113617 CCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAGATCATCA 113676
||| |||| ||||||| | |||||| || || ||||||||||||| ||||||| ||
Sbjct 832 CCCTGGGCCAGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGAAGAAGGAGATCCTCG 773
Query 113677 ACG 113679
|||
Sbjct 772 ACG 770
>seq54899
Length=627
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 112501 GCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCGA 112560
||| |||||| ||||| |||| ||| |||| |||| | | ||||||||| ||
Sbjct 279 GCCAGGGCCGCGGCTCGGCCGCGAACTCCGCGGTCTGCTACCTGCTCGGCATCACCGCGG 220
Query 112561 TCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGACT 112620
||||| ||||||||| ||||||| ||||||||||||| || | || ||| |||
Sbjct 219 TCGACTCGATCAAGTTCGACCTGCCGTTCGAGCGCTTCCTCTCCTCGCTGCGCGACGAGG 160
Query 112621 TCCCCGACATCGACGTCGACTTC 112643
|| ||||||||||| ||||||
Sbjct 159 AGCCGGACATCGACGTGGACTTC 137
>seq87011
Length=895
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/147 (74%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 112499 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 112558
|||||| ||||| || |||| || |||||| ||| | |||| ||| | ||||||
Sbjct 76 CGGCCCCGGCCGCGGGTCCGGCGCCGGCTCGATGGCGGCGTACGCGATGCGGATCACCGA 135
Query 112559 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CCC 112616
| |||||| | || ||| ||||| |||||||| ||| | ||||| |||||| | |
Sbjct 136 CCTGGACCCGCTGCAGCACGGGCTGATCTTCGAGCGGTTCCTGAACCCCGACCGCGTCTC 195
Query 112617 GACTTCCCCGACATCGACGTCGACTTC 112643
|| | |||||| ||||||||||||||
Sbjct 196 GA--TGCCCGACTTCGACGTCGACTTC 220
>seq96416
Length=762
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 113553 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 113612
|||||||||||| ||||||||||||||||| |||| | | |||| ||| ||| |||
Sbjct 500 ACCTACGGCATCATGGTCTACCAGGAGCAGGTGATGCAGATCGCCCAGGTCATGGGCGGC 441
Query 113613 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGA 113661
| ||| ||||| |||||| | |||||| || || ||||||||||
Sbjct 440 TATTCCCTGGGCGGGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGA 392
>seq70008
Length=771
Score = 84.2 bits (92), Expect = 2e-11
Identities = 110/148 (74%), Gaps = 6/148 (4%)
Strand=Plus/Plus
Query 112499 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCA-TGGGCATCACCT 112557
|||||||||||| ||||||| || ||||||||||| | | ||| || |||||||
Sbjct 260 CGGCCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTGGCGTG-GTCGCTGCTCATCACCG 318
Query 112558 CGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CC 112615
|||||||| | | || |||| |||||||||||||| ||||||| || ||| |
Sbjct 319 ATCTCGACCCGCTGCGCTTCGGCCTGCTGTTCGAGCGCTTCCTCAACCCCGAGCGCGTCT 378
Query 112616 CGACTTCCCCGACATCGACGTCGACTTC 112643
||| | || || ||||| ||||||||
Sbjct 379 CGA--TGCCGGATTTCGACATCGACTTC 404
>seq67087
Length=1377
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 89817 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 89876
||||| ||||| |||||||| || || | || ||||||| || || |||||||||||||
Sbjct 246 ACGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGA 305
Query 89877 ATCCTGTCACCCCGACTC 89894
||||||||| ||||| ||
Sbjct 306 ATCCTGTCATCCCGATTC 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 491510671919760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |