Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq119262 453 1e-122 seq85951 392 3e-104 seq70043 356 2e-93 seq106053 98.7 1e-15 seq59665 98.7 1e-15 seq119311 86.0 7e-12 seq70008 84.2 2e-11 seq54898 84.2 2e-11 >seq119262 Length=507 Score = 453 bits (502), Expect = 1e-122 Identities = 407/507 (80%), Gaps = 4/507 (1%) Strand=Plus/Plus Query 156367 GTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCTACCTGCCGATGTTC 156426 |||||||| |||||||| ||| |||||||||||| ||||||||||||||||||| | Sbjct 1 GTCGCCTCGACGCTGCTCGAGTCGTTCCTGTTCTACTCGGGCTTCTACCTGCCGATGTAC 60 Query 156427 TGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATCCGGCTCATCATCCGGGAC 156486 ||||| ||||| | ||||||||| ||||| |||||| | ||||| ||||||||||| ||| Sbjct 61 TGGTCCTCGCGCGCCAAGCTCACGAACACGGCCGACCTCATCCGCCTCATCATCCGCGAC 120 Query 156487 GAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGCCTGGAGAAGGAGACC 156546 |||||||||||||| ||||||||||||||||||||||||||||| || ||| | | Sbjct 121 GAGGCCGTGCACGGGTACTACATCGGCTACAAGTTCCAGAAGGGGCTCGAGGGCCTGTCG 180 Query 156547 AAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCTGCTGTTCGAGCTGTTCGAC 156606 ||| ||| ||||||| ||||||||||||| | |||||||| |||||| | |||| Sbjct 181 GAGGAGCGCAAGCAGGAGATCAAGGACTACACGTTCTCGCTGCTGTACGAGCTCTACGAC 240 Query 156607 AACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGCCAGACCGAGGACGTGAAG 156666 |||||| |||||||||||||||||||||||| | ||| | |||||||||||| ||| Sbjct 241 AACGAGATCCAGTACACCCAGGACCTCTACGACGGCGTCGGTCTGACCGAGGACGTCAAG 300 Query 156667 AAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTGGGCTACGACGCGCTGTTC 156726 |||||||||| ||||||| ||||||||| || ||||||||||||||| || ||||| Sbjct 301 AAGTTCCTGCACTACAACGCCAACAAGGCGCTCATGAACCTGGGCTACGAGCCGATGTTC 360 Query 156727 AGCCGCA-GCGACTGC-GACGTCAACCCGGCCATCCTGAGCGCGCTGTCGCCCGGTGGAG 156784 ||| | | ||| | ||||| |||||||| |||||| || ||||| || | | Sbjct 361 --CCGAAGGAGACGACGGACGTGAACCCGGCGATCCTGTCGGCACTGTCCCCGAACGCCG 418 Query 156785 ACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACGTCATGGCCAAGGGTGTGG 156844 |||||||||||||||||||||| ||| ||| |||||||||| | ||||| | | Sbjct 419 ACGAGAACCACGACTTCTTCTCCGGGAGCGGCTCGTCGTACGTCATCGGCAAGGCGGAGA 478 Query 156845 TCACCGAAGACGACGACTGGGACTTCT 156871 |||||| ||||| ||||||||||||| Sbjct 479 CCACCGAGGACGAGGACTGGGACTTCT 505 >seq85951 Length=913 Score = 392 bits (434), Expect = 3e-104 Identities = 342/425 (80%), Gaps = 0/425 (0%) Strand=Plus/Plus Query 152886 ATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGCG 152945 || |||||| | ||||||||||| || || || ||| |||||| |||||||| || || Sbjct 199 ATGTTCGAGCGGTTCACCGACCGGGCTCGCCGGGTCGTCGTCCTGGCCCAAGAAGAGGCC 258 Query 152946 CGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGAG 153005 || ||||||||||| ||||||||||||||||| | || || || ||| |||||||| Sbjct 259 CGGATGCTCAACCACAACTACATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAG 318 Query 153006 GGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCGT 153065 || ||||| || || |||||||| ||| || |||| |||| || || | ||||| Sbjct 319 GGTGAGGGTGTCGCGGCCAAGGCCCTGGAGAGCCTCGGCATCTCGCTCGACGCCGTGCGC 378 Query 153066 GCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTTC 153125 ||||||||||||||||||| || ||||||||||| || |||| |||||||| ||| Sbjct 379 CAGCAGGTCGAGGAGATCATCGGTCAGGGCCAGCAGGCCCCGTCCGGTCACATCCCCTTC 438 Query 153126 ACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCAC 153185 ||| || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 439 ACCCCGCGGGCCAAGAAGGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCAC 498 Query 153186 AACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGGC 153245 ||||||||||| |||||||| ||||||| | ||| ||||||||||| |||||||| | | Sbjct 499 AACTACATCGGGACCGAGCACATCCTGCTCGGCCTCATCCGCGAGGGCGAGGGCGTCGCC 558 Query 153246 TGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCATCCAG 153305 |||||| || || |||| |||||| || || | ||||||||||||| |||||||||| Sbjct 559 GCCCAGGTCCTCGTCAAGCTCGGCGCCGACCTCAACAAGGTCCGCCAGCAGGTCATCCAG 618 Query 153306 CTGCT 153310 ||||| Sbjct 619 CTGCT 623 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 153165 GAGGCGCTGCAGCTCGGCCACAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATC 153224 ||||| | | |||| |||||||||||||||||||||||| |||| |||| ||||||| Sbjct 253 GAGGCCCGGATGCTCAACCACAACTACATCGGCACCGAGCACATCCTCCTGGGCCTGATC 312 Query 153225 CGCGAGGGTGAGGGCGT 153241 | |||||||||||| || Sbjct 313 CACGAGGGTGAGGGTGT 329 >seq70043 Length=1279 Score = 356 bits (394), Expect = 2e-93 Identities = 338/432 (78%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 152885 CATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGC 152944 ||| |||||||| ||||||||||| || ||||||||| ||| || || ||||| ||||| Sbjct 742 CATGTTCGAGAGGTTCACCGACCGGGCGCGTCGCGTCGTCGTGCTGGCGCAAGAAGAAGC 801 Query 152945 GCGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGA 153004 |||||||||||||| |||||||| |||||||| | |||||||| || ||||||| Sbjct 802 CCGCATGCTCAACCACAACTACATCGGGACCGAGCACATCCTGCTCGGCCTCATCCACGA 861 Query 153005 GGGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCG 153064 |||||||||||| ||||| ||||||||| || | |||| ||| ||| |||| || || Sbjct 862 GGGCGAGGGCGTCGCCGCAAAGGCGCTGGAGTCCCTCGGCATTTCCCTCGAGGCCGTCCG 921 Query 153065 TGCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTT 153124 ||||||| |||||||||||||||||||||||| | || | ||| ||||| ||||| Sbjct 922 CCAGAAGGTCGAAGAGATCATCGGCCACGGCCAGCAGTCGCCGAGCGGACACATTCCGTT 981 Query 153125 CACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCA 153184 ||| || ||||| ||||||||||| ||||||||||||||||||||| || ||| Sbjct 982 CACGCCGCGGGCCAAGAAGGTCCTGGAGCTCTCGCTGCGCGAGGCGCTGCAGATCAACCA 1041 Query 153185 CAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGG 153244 || ||||||||| |||||||| | || || | ||| ||||||||||| |||||||| | Sbjct 1042 CAGCTACATCGGGACCGAGCACATTCTTCTCGGCCTCATCCGCGAGGGCGAGGGCGTCGC 1101 Query 153245 CTGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCATCCA 153304 | | |||| || || |||| |||||| || || | | || ||| | |||| |||| Sbjct 1102 CGCCTAGGTCCTCGTCAAGCTCGGCGCCGACCTCAACCGCGTGCGCAACCAGGTCCTCCA 1161 Query 153305 GCTGCTGTCCGG 153316 |||||| || || Sbjct 1162 GCTGCTCTCGGG 1173 >seq106053 Length=644 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 153170 GCTGCAGCTCGGCCACAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGA 153229 ||||||| || |||| |||||||||||| ||||| | || |||| ||| |||||||| Sbjct 644 GCTGCAGATCAACCACTCCTACATCGGCACGGAGCACATTCTTCTGGGCCTCATCCGCGA 585 Query 153230 GGGTGAGGGCGTGGGCTGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCG 153289 ||||||||| || | | ||||| || || |||| |||||| || || | | || || Sbjct 584 GGGTGAGGGTGTCGCCGCGCAGGTCCTCGTCAAGCTCGGCGCCGACCTCAACCGCGTGCG 525 Query 153290 CCAGGTGGTCATCCAGCTGCTGTCCGG 153316 | | |||| | |||||||| ||||| Sbjct 524 CAACCAGGTCCTGCAGCTGCTCTCCGG 498 >seq59665 Length=1686 Score = 98.7 bits (108), Expect = 1e-15 Identities = 344/526 (65%), Gaps = 41/526 (8%) Strand=Plus/Minus Query 41286 GGCCTGATCAACGCGCTGATGCGCGACCGTCACGGCACTCCGTTCGAGCACATGAACGTC 41345 |||||||||||| |||||||||||||| ||||| | ||||||||||||| | Sbjct 1351 GGCCTGATCAACTACCTGATGCGCGACCGCCACGGGTCGCCGTTCGAGCACAACTCGATG 1292 Query 41346 ACGGTCCGGGTCACCGCACCGATCTTCGTCTGGCGCGAGCACCATCGTCACCGGGCGGGG 41405 || || || || ||||||||||| | |||||| | || ||||| | Sbjct 1291 ACCTTCTACGTGCAGGCGCCGATCTTCGTGTTCCGCGAGTTCATGCGGCACCGCATCG-- 1234 Query 41406 TTCAGCTACAACGAGGAGTCGGGCCGCTACAAGCAGCTCGATCCGGTGTTCTACATCCCG 41465 | ||||||||||||||||||||||||| |||| || ||||||||| | ||| Sbjct 1233 -CCTCCTACAACGAGGAGTCGGGCCGCTACCGCGAGCTGCGGCCCGTGTTCTACGTGCCG 1175 Query 41466 TCGGTCGGGCGAGGCATCGCCAAGGTCGAGG-GGACCAAGAGCATG-GACTACGTGCTC- 41522 ||| |||| || | | ||| ||| || || | | | | ||||| | || Sbjct 1174 TCG--CGGGACCGGAA----CCTGGTGCAGGTGGGCC--GCCCCGGCGCCTACGAGTTCC 1123 Query 41523 -GCCATGGGAACCGGCGAGCAGCGCCGTATGGTCGACAGCGCCACGCACCAGGTGTGCGT 41581 ||| ||| | || |||||||| | |||||||| ||||| || ||| || ||| Sbjct 1122 TGCC--GGGCAGCGACGAGCAGCACGCGCTGGTCGACGGCGCCGTGCGGCAGCAGTCCGT 1065 Query 41582 GCTCGCCTATGAGGCCTACGAGCGCCAGCTGGAGGGAGGCATCGTGCGCGAAGTCGCTCG 41641 | || || ||||||||| | ||| || | ||| ||| ||||| || || || Sbjct 1064 GGCGGCGTACGAGGCCTACCGGTCGATGCTCGACGCGGGCGTCGCTCGCGAGGTGGCGCG 1005 Query 41642 CATGATCCTGCCCGTCAGCATCATGAGCACCTGCAT---CGTCACGATGAACGCCCGGTC 41698 || | ||||| | | | || | | | ||| ||| |||||||||||||| | Sbjct 1004 GATCGTGCTGCCGCT---GAACCTGTACTCGTCCATGTACGTGACGATGAACGCCCGTGC 948 Query 41699 GCTGATGGCCTTCCTCAGCCTCCG---CCAGCGTCACGA--CGA---CGCCCT-GTTCCC 41749 ||||||| |||| || || || | ||| || ||| ||| |||||| |||||| Sbjct 947 GCTGATGAACTTCGTCTCGCTGCGCACCAAGCATCCCGAGTCGAAGGCGCCCTCGTTCCC 888 Query 41750 GAGCAAGCCCCAGTGGGAGATCAACCAGGTGGCCGACCAGTACGAG 41795 | ||| | |||||| | ||||||||| ||| |||| Sbjct 887 G---------CAGCGCGAGATCGAGATGGTGGCCGAGCAGATCGAG 851 >seq119311 Length=506 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 92612 GTAGCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCA 92671 || ||||| | ||||||| |||||||||| ||||||||||||||| ||| || |||||| Sbjct 297 GTCGCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCTGGTTCA 356 Query 92672 AATCCCACTCCCGCCAC 92688 ||||| ||||||| || Sbjct 357 AATCCAGCTCCCGCAAC 373 >seq70008 Length=771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 110993 CGGCCCTGGCCGTGGCTCCGGCGGCGGCTCGCTGGTGAACTACCTGCTGGGCATCACCTC 111052 |||||| ||||| |||||||||| ||||||||||||| | |||| ||||||| Sbjct 260 CGGCCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTGGCGTGGTCGCTGCTCATCACCGA 319 Query 111053 GCTCGACCCGATCAAGTACGACCTGTCGTTCGAGCGGTTCATCAACCCCGACCG 111106 ||||||||| | | || |||| ||||||||| ||| |||||||||| || Sbjct 320 TCTCGACCCGCTGCGCTTCGGCCTGCTGTTCGAGCGCTTCCTCAACCCCGAGCG 373 >seq54898 Length=756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 111962 CATGCGGCGTCGGCACGGCGAGGAGGAGATCACCTACGACCACCCGCTGCTGGAGCAGGT 112021 ||| ||||| || | |||||| || |||||||||| ||||||||||||||||| ||| Sbjct 209 CATCCGGCGACGCCGCGGCGACGAACCGATCACCTACCTCCACCCGCTGCTGGAGCCGGT 150 Query 112022 GACCGGCCACACGATGGGCATCCTGGTCTACCAGGAGGACCTGGTG 112067 | | || |||| | ||||||| | ||| ||||||| | ||| || Sbjct 149 GCTCTCCCGCACGCTCGGCATCCCGATCTTCCAGGAGCAGCTGATG 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525719053079280