Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_011273.1
Length=164602
Score E
Sequences producing significant alignments: (Bits) Value
seq119262 453 1e-122
seq85951 392 3e-104
seq70043 356 2e-93
seq106053 98.7 1e-15
seq59665 98.7 1e-15
seq119311 86.0 7e-12
seq70008 84.2 2e-11
seq54898 84.2 2e-11
>seq119262
Length=507
Score = 453 bits (502), Expect = 1e-122
Identities = 407/507 (80%), Gaps = 4/507 (1%)
Strand=Plus/Plus
Query 156367 GTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCTACCTGCCGATGTTC 156426
|||||||| |||||||| ||| |||||||||||| ||||||||||||||||||| |
Sbjct 1 GTCGCCTCGACGCTGCTCGAGTCGTTCCTGTTCTACTCGGGCTTCTACCTGCCGATGTAC 60
Query 156427 TGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATCCGGCTCATCATCCGGGAC 156486
||||| ||||| | ||||||||| ||||| |||||| | ||||| ||||||||||| |||
Sbjct 61 TGGTCCTCGCGCGCCAAGCTCACGAACACGGCCGACCTCATCCGCCTCATCATCCGCGAC 120
Query 156487 GAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGCCTGGAGAAGGAGACC 156546
|||||||||||||| ||||||||||||||||||||||||||||| || ||| | |
Sbjct 121 GAGGCCGTGCACGGGTACTACATCGGCTACAAGTTCCAGAAGGGGCTCGAGGGCCTGTCG 180
Query 156547 AAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCTGCTGTTCGAGCTGTTCGAC 156606
||| ||| ||||||| ||||||||||||| | |||||||| |||||| | ||||
Sbjct 181 GAGGAGCGCAAGCAGGAGATCAAGGACTACACGTTCTCGCTGCTGTACGAGCTCTACGAC 240
Query 156607 AACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGCCAGACCGAGGACGTGAAG 156666
|||||| |||||||||||||||||||||||| | ||| | |||||||||||| |||
Sbjct 241 AACGAGATCCAGTACACCCAGGACCTCTACGACGGCGTCGGTCTGACCGAGGACGTCAAG 300
Query 156667 AAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTGGGCTACGACGCGCTGTTC 156726
|||||||||| ||||||| ||||||||| || ||||||||||||||| || |||||
Sbjct 301 AAGTTCCTGCACTACAACGCCAACAAGGCGCTCATGAACCTGGGCTACGAGCCGATGTTC 360
Query 156727 AGCCGCA-GCGACTGC-GACGTCAACCCGGCCATCCTGAGCGCGCTGTCGCCCGGTGGAG 156784
||| | | ||| | ||||| |||||||| |||||| || ||||| || | |
Sbjct 361 --CCGAAGGAGACGACGGACGTGAACCCGGCGATCCTGTCGGCACTGTCCCCGAACGCCG 418
Query 156785 ACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACGTCATGGCCAAGGGTGTGG 156844
|||||||||||||||||||||| ||| ||| |||||||||| | ||||| | |
Sbjct 419 ACGAGAACCACGACTTCTTCTCCGGGAGCGGCTCGTCGTACGTCATCGGCAAGGCGGAGA 478
Query 156845 TCACCGAAGACGACGACTGGGACTTCT 156871
|||||| ||||| |||||||||||||
Sbjct 479 CCACCGAGGACGAGGACTGGGACTTCT 505
>seq85951
Length=913
Score = 392 bits (434), Expect = 3e-104
Identities = 342/425 (80%), Gaps = 0/425 (0%)
Strand=Plus/Plus
Query 152886 ATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGCG 152945
|| |||||| | ||||||||||| || || || ||| |||||| |||||||| || ||
Sbjct 199 ATGTTCGAGCGGTTCACCGACCGGGCTCGCCGGGTCGTCGTCCTGGCCCAAGAAGAGGCC 258
Query 152946 CGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGAG 153005
|| ||||||||||| ||||||||||||||||| | || || || ||| ||||||||
Sbjct 259 CGGATGCTCAACCACAACTACATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAG 318
Query 153006 GGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCGT 153065
|| ||||| || || |||||||| ||| || |||| |||| || || | |||||
Sbjct 319 GGTGAGGGTGTCGCGGCCAAGGCCCTGGAGAGCCTCGGCATCTCGCTCGACGCCGTGCGC 378
Query 153066 GCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTTC 153125
||||||||||||||||||| || ||||||||||| || |||| |||||||| |||
Sbjct 379 CAGCAGGTCGAGGAGATCATCGGTCAGGGCCAGCAGGCCCCGTCCGGTCACATCCCCTTC 438
Query 153126 ACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCAC 153185
||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ACCCCGCGGGCCAAGAAGGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCAC 498
Query 153186 AACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGGC 153245
||||||||||| |||||||| ||||||| | ||| ||||||||||| |||||||| | |
Sbjct 499 AACTACATCGGGACCGAGCACATCCTGCTCGGCCTCATCCGCGAGGGCGAGGGCGTCGCC 558
Query 153246 TGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCATCCAG 153305
|||||| || || |||| |||||| || || | ||||||||||||| ||||||||||
Sbjct 559 GCCCAGGTCCTCGTCAAGCTCGGCGCCGACCTCAACAAGGTCCGCCAGCAGGTCATCCAG 618
Query 153306 CTGCT 153310
|||||
Sbjct 619 CTGCT 623
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 153165 GAGGCGCTGCAGCTCGGCCACAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATC 153224
||||| | | |||| |||||||||||||||||||||||| |||| |||| |||||||
Sbjct 253 GAGGCCCGGATGCTCAACCACAACTACATCGGCACCGAGCACATCCTCCTGGGCCTGATC 312
Query 153225 CGCGAGGGTGAGGGCGT 153241
| |||||||||||| ||
Sbjct 313 CACGAGGGTGAGGGTGT 329
>seq70043
Length=1279
Score = 356 bits (394), Expect = 2e-93
Identities = 338/432 (78%), Gaps = 0/432 (0%)
Strand=Plus/Plus
Query 152885 CATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGC 152944
||| |||||||| ||||||||||| || ||||||||| ||| || || ||||| |||||
Sbjct 742 CATGTTCGAGAGGTTCACCGACCGGGCGCGTCGCGTCGTCGTGCTGGCGCAAGAAGAAGC 801
Query 152945 GCGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGA 153004
|||||||||||||| |||||||| |||||||| | |||||||| || |||||||
Sbjct 802 CCGCATGCTCAACCACAACTACATCGGGACCGAGCACATCCTGCTCGGCCTCATCCACGA 861
Query 153005 GGGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCG 153064
|||||||||||| ||||| ||||||||| || | |||| ||| ||| |||| || ||
Sbjct 862 GGGCGAGGGCGTCGCCGCAAAGGCGCTGGAGTCCCTCGGCATTTCCCTCGAGGCCGTCCG 921
Query 153065 TGCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTT 153124
||||||| |||||||||||||||||||||||| | || | ||| ||||| |||||
Sbjct 922 CCAGAAGGTCGAAGAGATCATCGGCCACGGCCAGCAGTCGCCGAGCGGACACATTCCGTT 981
Query 153125 CACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCA 153184
||| || ||||| ||||||||||| ||||||||||||||||||||| || |||
Sbjct 982 CACGCCGCGGGCCAAGAAGGTCCTGGAGCTCTCGCTGCGCGAGGCGCTGCAGATCAACCA 1041
Query 153185 CAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGG 153244
|| ||||||||| |||||||| | || || | ||| ||||||||||| |||||||| |
Sbjct 1042 CAGCTACATCGGGACCGAGCACATTCTTCTCGGCCTCATCCGCGAGGGCGAGGGCGTCGC 1101
Query 153245 CTGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCATCCA 153304
| | |||| || || |||| |||||| || || | | || ||| | |||| ||||
Sbjct 1102 CGCCTAGGTCCTCGTCAAGCTCGGCGCCGACCTCAACCGCGTGCGCAACCAGGTCCTCCA 1161
Query 153305 GCTGCTGTCCGG 153316
|||||| || ||
Sbjct 1162 GCTGCTCTCGGG 1173
>seq106053
Length=644
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 153170 GCTGCAGCTCGGCCACAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGA 153229
||||||| || |||| |||||||||||| ||||| | || |||| ||| ||||||||
Sbjct 644 GCTGCAGATCAACCACTCCTACATCGGCACGGAGCACATTCTTCTGGGCCTCATCCGCGA 585
Query 153230 GGGTGAGGGCGTGGGCTGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCG 153289
||||||||| || | | ||||| || || |||| |||||| || || | | || ||
Sbjct 584 GGGTGAGGGTGTCGCCGCGCAGGTCCTCGTCAAGCTCGGCGCCGACCTCAACCGCGTGCG 525
Query 153290 CCAGGTGGTCATCCAGCTGCTGTCCGG 153316
| | |||| | |||||||| |||||
Sbjct 524 CAACCAGGTCCTGCAGCTGCTCTCCGG 498
>seq59665
Length=1686
Score = 98.7 bits (108), Expect = 1e-15
Identities = 344/526 (65%), Gaps = 41/526 (8%)
Strand=Plus/Minus
Query 41286 GGCCTGATCAACGCGCTGATGCGCGACCGTCACGGCACTCCGTTCGAGCACATGAACGTC 41345
|||||||||||| |||||||||||||| ||||| | ||||||||||||| |
Sbjct 1351 GGCCTGATCAACTACCTGATGCGCGACCGCCACGGGTCGCCGTTCGAGCACAACTCGATG 1292
Query 41346 ACGGTCCGGGTCACCGCACCGATCTTCGTCTGGCGCGAGCACCATCGTCACCGGGCGGGG 41405
|| || || || ||||||||||| | |||||| | || ||||| |
Sbjct 1291 ACCTTCTACGTGCAGGCGCCGATCTTCGTGTTCCGCGAGTTCATGCGGCACCGCATCG-- 1234
Query 41406 TTCAGCTACAACGAGGAGTCGGGCCGCTACAAGCAGCTCGATCCGGTGTTCTACATCCCG 41465
| ||||||||||||||||||||||||| |||| || ||||||||| | |||
Sbjct 1233 -CCTCCTACAACGAGGAGTCGGGCCGCTACCGCGAGCTGCGGCCCGTGTTCTACGTGCCG 1175
Query 41466 TCGGTCGGGCGAGGCATCGCCAAGGTCGAGG-GGACCAAGAGCATG-GACTACGTGCTC- 41522
||| |||| || | | ||| ||| || || | | | | ||||| | ||
Sbjct 1174 TCG--CGGGACCGGAA----CCTGGTGCAGGTGGGCC--GCCCCGGCGCCTACGAGTTCC 1123
Query 41523 -GCCATGGGAACCGGCGAGCAGCGCCGTATGGTCGACAGCGCCACGCACCAGGTGTGCGT 41581
||| ||| | || |||||||| | |||||||| ||||| || ||| || |||
Sbjct 1122 TGCC--GGGCAGCGACGAGCAGCACGCGCTGGTCGACGGCGCCGTGCGGCAGCAGTCCGT 1065
Query 41582 GCTCGCCTATGAGGCCTACGAGCGCCAGCTGGAGGGAGGCATCGTGCGCGAAGTCGCTCG 41641
| || || ||||||||| | ||| || | ||| ||| ||||| || || ||
Sbjct 1064 GGCGGCGTACGAGGCCTACCGGTCGATGCTCGACGCGGGCGTCGCTCGCGAGGTGGCGCG 1005
Query 41642 CATGATCCTGCCCGTCAGCATCATGAGCACCTGCAT---CGTCACGATGAACGCCCGGTC 41698
|| | ||||| | | | || | | | ||| ||| |||||||||||||| |
Sbjct 1004 GATCGTGCTGCCGCT---GAACCTGTACTCGTCCATGTACGTGACGATGAACGCCCGTGC 948
Query 41699 GCTGATGGCCTTCCTCAGCCTCCG---CCAGCGTCACGA--CGA---CGCCCT-GTTCCC 41749
||||||| |||| || || || | ||| || ||| ||| |||||| ||||||
Sbjct 947 GCTGATGAACTTCGTCTCGCTGCGCACCAAGCATCCCGAGTCGAAGGCGCCCTCGTTCCC 888
Query 41750 GAGCAAGCCCCAGTGGGAGATCAACCAGGTGGCCGACCAGTACGAG 41795
| ||| | |||||| | ||||||||| ||| ||||
Sbjct 887 G---------CAGCGCGAGATCGAGATGGTGGCCGAGCAGATCGAG 851
>seq119311
Length=506
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 92612 GTAGCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCA 92671
|| ||||| | ||||||| |||||||||| ||||||||||||||| ||| || ||||||
Sbjct 297 GTCGCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCTGGTTCA 356
Query 92672 AATCCCACTCCCGCCAC 92688
||||| ||||||| ||
Sbjct 357 AATCCAGCTCCCGCAAC 373
>seq70008
Length=771
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 110993 CGGCCCTGGCCGTGGCTCCGGCGGCGGCTCGCTGGTGAACTACCTGCTGGGCATCACCTC 111052
|||||| ||||| |||||||||| ||||||||||||| | |||| |||||||
Sbjct 260 CGGCCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTGGCGTGGTCGCTGCTCATCACCGA 319
Query 111053 GCTCGACCCGATCAAGTACGACCTGTCGTTCGAGCGGTTCATCAACCCCGACCG 111106
||||||||| | | || |||| ||||||||| ||| |||||||||| ||
Sbjct 320 TCTCGACCCGCTGCGCTTCGGCCTGCTGTTCGAGCGCTTCCTCAACCCCGAGCG 373
>seq54898
Length=756
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 111962 CATGCGGCGTCGGCACGGCGAGGAGGAGATCACCTACGACCACCCGCTGCTGGAGCAGGT 112021
||| ||||| || | |||||| || |||||||||| ||||||||||||||||| |||
Sbjct 209 CATCCGGCGACGCCGCGGCGACGAACCGATCACCTACCTCCACCCGCTGCTGGAGCCGGT 150
Query 112022 GACCGGCCACACGATGGGCATCCTGGTCTACCAGGAGGACCTGGTG 112067
| | || |||| | ||||||| | ||| ||||||| | ||| ||
Sbjct 149 GCTCTCCCGCACGCTCGGCATCCCGATCTTCCAGGAGCAGCTGATG 104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 525719053079280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |