Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq109433 102 6e-17 >seq109433 Length=607 Score = 102 bits (112), Expect = 6e-17 Identities = 182/263 (69%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 111037 TCCGAAGACTTCGACGACGTGTTCAAGACTAACGTGTACGCGCTGTTCTGGATGTGCCGG 111096 ||||| | |||||| | || |||||| ||||| |||||||||||||||||| || Sbjct 149 TCCGAGCAGTTCGACCAGACGTACAAGACGAACGTCTACGCGCTGTTCTGGATGGTCCAA 208 Query 111097 GAGGCGCTCAAGGGCATGCGCGCCGGGGACAGCATAATAACGACCGTTTCGGGCCAGGCC 111156 ||||| || ||| | ||| ||| || ||||| || |||||| ||| ||||||| Sbjct 209 GAGGCCCTGAAGCACCTGCCCGCGGGCTCGAGCATCATCACGACCTCCTCGATCCAGGCC 268 Query 111157 AAAGACCCGTCGACGTTCCTCGTGGACTACGCGGCGTCCAAGGGCGCCGTGGCGACGTTC 111216 | |||| | ||| || |||||||| |||||| ||| | || ||| Sbjct 269 TACAGCCCGAGCCCCGGCCTGGTCGACTACGCCAGCACCAAGGCCGCGATCAACACCTTC 328 Query 111217 ACGAAAGGTCTGGCGCGCCAGGTAGCGTCGCGAGGG-ATAAGAGTCAATGGCGTAGCGCC 111275 | || | || || | ||||| ||| | | |||| || | ||||| | ||| ||||| Sbjct 329 AGCAAGGCCCTCGCCCAGCAGGTCGCG-CCCAAGGGCATCCGCGTCAACGTCGTGGCGCC 387 Query 111276 CGGACCGGTGTGGACACCGCTGC 111298 ||| ||||| ||||| ||||||| Sbjct 388 CGGGCCGGTCTGGACGCCGCTGC 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381151229619816